RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 RAB37Q96AX2 223 aa9.98□□□□□ -0.81
COL9A3-214ENST00000490398 A0A0B4J2C4 111 aa9.97□□□□□ -0.81
COL9A3-214ENST00000490398 FXYD2P54710 66 aa9.97□□□□□ -0.81
COL9A3-214ENST00000490398 ASB16-AS1Q495Z4 193 aa9.97□□□□□ -0.81
COL9A3-214ENST00000490398 BVES-AS1Q5T3Y7 98 aa9.97□□□□□ -0.81
COL9A3-214ENST00000490398 XP32Q5T750 250 aa9.97□□□□□ -0.81
COL9A3-214ENST00000490398 CEND1Q8N111 149 aa9.97□□□□□ -0.81
COL9A3-214ENST00000490398 FAM218AQ96MZ4 157 aa9.96□□□□□ -0.82
COL9A3-214ENST00000490398 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.95□□□□□ -0.82
COL9A3-214ENST00000490398 C1orf195Q5TG92 126 aa9.94□□□□□ -0.82
COL9A3-214ENST00000490398 Q5XG85 94 aa9.94□□□□□ -0.82
COL9A3-214ENST00000490398 C9orf92A6NGG3 77 aa9.93□□□□□ -0.82
COL9A3-214ENST00000490398 IGLV8-61A0A075B6I0 122 aa9.92□□□□□ -0.82
COL9A3-214ENST00000490398 F8WEM9 126 aa9.92□□□□□ -0.82
COL9A3-214ENST00000490398 OCIAD2Q56VL3 154 aa9.91□□□□□ -0.82
COL9A3-214ENST00000490398 IGFL1Q6UW32 110 aa9.91□□□□□ -0.82
COL9A3-214ENST00000490398 PRO1854Q9UHT4 67 aa9.9□□□□□ -0.82
COL9A3-214ENST00000490398 A0A0U1RQV1 116 aa9.88□□□□□ -0.83
COL9A3-214ENST00000490398 H3BUT2 72 aa9.88□□□□□ -0.83
COL9A3-214ENST00000490398 SEC61BP60468 96 aaKnown RBP9.88□□□□□ -0.83
COL9A3-214ENST00000490398 H0YGX0 51 aa9.87□□□□□ -0.83
COL9A3-214ENST00000490398 K7ERJ3 54 aa9.87□□□□□ -0.83
COL9A3-214ENST00000490398 LCE2AQ5TA79 106 aaPredicted RBP9.87□□□□□ -0.83
COL9A3-214ENST00000490398 CLEC2BQ92478 149 aa9.86□□□□□ -0.83
COL9A3-214ENST00000490398 TMEM238LA0A1B0GVL6 79 aa9.85□□□□□ -0.83
COL9A3-214ENST00000490398 A6NJY4 79 aa9.85□□□□□ -0.83
COL9A3-214ENST00000490398 TRIAP1O43715 76 aa9.85□□□□□ -0.83
COL9A3-214ENST00000490398 HSD52Q0P140 79 aa9.85□□□□□ -0.83
COL9A3-214ENST00000490398 Q6JHZ5 121 aa9.85□□□□□ -0.83
COL9A3-214ENST00000490398 PPDPFLQ8WWR9 84 aa9.85□□□□□ -0.83
COL9A3-214ENST00000490398 SNHG12Q9BXW3 62 aa9.85□□□□□ -0.83
COL9A3-214ENST00000490398 TRBV7-7A0A0K0K1E9 115 aa9.84□□□□□ -0.83
COL9A3-214ENST00000490398 TCL1BO95988 128 aa9.82□□□□□ -0.84
COL9A3-214ENST00000490398 UQCR10Q9UDW1 63 aa9.8□□□□□ -0.84
COL9A3-214ENST00000490398 NDUFV3P56181 108 aaKnown RBP9.79□□□□□ -0.84
COL9A3-214ENST00000490398 PCOTHQ58A44 107 aa9.79□□□□□ -0.84
COL9A3-214ENST00000490398 A0A1B0GX51 115 aa9.76□□□□□ -0.85
COL9A3-214ENST00000490398 SNCGO76070 127 aa9.75□□□□□ -0.85
COL9A3-214ENST00000490398 FABP2P12104 132 aa9.75□□□□□ -0.85
COL9A3-214ENST00000490398 H3BMG7 143 aa9.73□□□□□ -0.85
COL9A3-214ENST00000490398 PSMB2P49721 201 aa9.73□□□□□ -0.85
COL9A3-214ENST00000490398 Q6Q795 121 aa9.71□□□□□ -0.86
COL9A3-214ENST00000490398 RPL37P61927 97 aaKnown RBP9.7□□□□□ -0.86
COL9A3-214ENST00000490398 A0A1B0GV72 72 aa9.69□□□□□ -0.86
COL9A3-214ENST00000490398 KRTAP19-2Q3LHN2 52 aa9.69□□□□□ -0.86
COL9A3-214ENST00000490398 A0A1W2PNM2 257 aa9.68□□□□□ -0.86
COL9A3-214ENST00000490398 LST1O00453 97 aa9.68□□□□□ -0.86
COL9A3-214ENST00000490398 LCE2CQ5TA81 110 aa9.68□□□□□ -0.86
COL9A3-214ENST00000490398 TEN1Q86WV5 123 aa9.67□□□□□ -0.86
COL9A3-214ENST00000490398 A0A087WSZ3 146 aa9.66□□□□□ -0.86
COL9A3-214ENST00000490398 ORMDL1Q9P0S3 153 aa9.66□□□□□ -0.86
COL9A3-214ENST00000490398 DNAL4O96015 105 aa9.65□□□□□ -0.86
COL9A3-214ENST00000490398 OBSCN-AS1Q96MR7 158 aa9.65□□□□□ -0.86
COL9A3-214ENST00000490398 COX6CP09669 75 aa9.64□□□□□ -0.87
COL9A3-214ENST00000490398 Q96NJ1 140 aa9.64□□□□□ -0.87
COL9A3-214ENST00000490398 FLGP20930 4061 aaPredicted RBP9.63□□□□□ -0.87
COL9A3-214ENST00000490398 GHRHP01286 108 aa9.63□□□□□ -0.87
COL9A3-214ENST00000490398 SS18L2Q9UHA2 77 aa9.61□□□□□ -0.87
COL9A3-214ENST00000490398 SCGB1C2P0DMR2 95 aa9.59□□□□□ -0.87
COL9A3-214ENST00000490398 ANKRD29Q8N6D5 301 aa9.59□□□□□ -0.87
COL9A3-214ENST00000490398 TMEM256-PLSCR3K7ERE1 68 aa9.58□□□□□ -0.88
COL9A3-214ENST00000490398 TRACP01848 142 aa9.58□□□□□ -0.88
COL9A3-214ENST00000490398 NAA38Q9BRA0 125 aaKnown RBP9.58□□□□□ -0.88
COL9A3-214ENST00000490398 SMIM6P0DI80 62 aa9.56□□□□□ -0.88
COL9A3-214ENST00000490398 H3BQ85 93 aa9.55□□□□□ -0.88
COL9A3-214ENST00000490398 UBE2V1Q13404 147 aa9.55□□□□□ -0.88
COL9A3-214ENST00000490398 KRTAP9-2Q9BYQ4 174 aa9.55□□□□□ -0.88
COL9A3-214ENST00000490398 TRBV7-4A0A0J9YYF1 115 aa9.54□□□□□ -0.88
COL9A3-214ENST00000490398 Q75L30 129 aa9.53□□□□□ -0.88
COL9A3-214ENST00000490398 DSCR10P59022 87 aa9.52□□□□□ -0.89
COL9A3-214ENST00000490398 MT1HP80294 61 aa9.52□□□□□ -0.89
COL9A3-214ENST00000490398 M0R143 59 aa9.51□□□□□ -0.89
COL9A3-214ENST00000490398 CCKP06307 115 aa9.51□□□□□ -0.89
COL9A3-214ENST00000490398 DEFB116Q30KQ4 102 aa9.51□□□□□ -0.89
COL9A3-214ENST00000490398 LOC105371267A0A1B0GV96 52 aa9.5□□□□□ -0.89
COL9A3-214ENST00000490398 SIGMAR1Q99720 223 aa9.5□□□□□ -0.89
COL9A3-214ENST00000490398 BAALC-AS2P0C853 105 aa9.49□□□□□ -0.89
COL9A3-214ENST00000490398 A8MUU9 505 aa9.47□□□□□ -0.89
COL9A3-214ENST00000490398 IGKV4-1P06312 121 aa9.47□□□□□ -0.89
COL9A3-214ENST00000490398 C20orf166-AS1Q96NR2 134 aa9.47□□□□□ -0.89
COL9A3-214ENST00000490398 LINC00472Q9H8W2 130 aa9.47□□□□□ -0.89
COL9A3-214ENST00000490398 RBM3P98179 157 aaKnown RBP9.46□□□□□ -0.9
COL9A3-214ENST00000490398 ATP11AUNQ6ZP68 121 aa9.46□□□□□ -0.9
COL9A3-214ENST00000490398 VPS25Q9BRG1 176 aa9.46□□□□□ -0.9
COL9A3-214ENST00000490398 NOTCH2NLQ7Z3S9 236 aa9.45□□□□□ -0.9
COL9A3-214ENST00000490398 KRTAP16-1A8MUX0 517 aa9.42□□□□□ -0.9
COL9A3-214ENST00000490398 ATXN8Q156A1 80 aa9.42□□□□□ -0.9
COL9A3-214ENST00000490398 BATFQ16520 125 aa9.42□□□□□ -0.9
COL9A3-214ENST00000490398 TSTD3H0UI37 97 aa9.41□□□□□ -0.9
COL9A3-214ENST00000490398 DSCR8Q96T75 97 aa9.41□□□□□ -0.9
COL9A3-214ENST00000490398 LINC00313P59037 77 aa9.39□□□□□ -0.91
COL9A3-214ENST00000490398 C9JAW5 83 aa9.37□□□□□ -0.91
COL9A3-214ENST00000490398 IGHV6-1A0A0B4J1U7 121 aa9.36□□□□□ -0.91
COL9A3-214ENST00000490398 COX6B2Q6YFQ2 88 aa9.36□□□□□ -0.91
COL9A3-214ENST00000490398 FSIP2Q5CZC0 6907 aa9.35□□□□□ -0.91
COL9A3-214ENST00000490398 Q6ZQT0 140 aa9.34□□□□□ -0.91
COL9A3-214ENST00000490398 TAX1BP3O14907 124 aa9.31□□□□□ -0.92
COL9A3-214ENST00000490398 KRTAP10-6P60371 365 aaPredicted RBP9.31□□□□□ -0.92
COL9A3-214ENST00000490398 LOC110117498A0A087WWA1 95 aa9.3□□□□□ -0.92
COL9A3-214ENST00000490398 A0A1B0GVX0 72 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms