RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 BVES-AS1Q5T3Y7 98 aa11.65□□□□□ -0.54
LIME1-207ENST00000489212 Q5XG85 94 aa11.65□□□□□ -0.54
LIME1-207ENST00000489212 RAB37Q96AX2 223 aa11.63□□□□□ -0.55
LIME1-207ENST00000489212 A0A0B4J2C4 111 aa11.62□□□□□ -0.55
LIME1-207ENST00000489212 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP11.62□□□□□ -0.55
LIME1-207ENST00000489212 KRTAP4-1Q9BYQ7 146 aa11.62□□□□□ -0.55
LIME1-207ENST00000489212 F8WEM9 126 aa11.61□□□□□ -0.55
LIME1-207ENST00000489212 SEC61BP60468 96 aaKnown RBP11.61□□□□□ -0.55
LIME1-207ENST00000489212 PYY3Q5JQD4 70 aa11.61□□□□□ -0.55
LIME1-207ENST00000489212 C1orf195Q5TG92 126 aa11.6□□□□□ -0.55
LIME1-207ENST00000489212 CEND1Q8N111 149 aa11.6□□□□□ -0.55
LIME1-207ENST00000489212 IGLV8-61A0A075B6I0 122 aa11.59□□□□□ -0.55
LIME1-207ENST00000489212 C9orf92A6NGG3 77 aa11.58□□□□□ -0.56
LIME1-207ENST00000489212 FXYD2P54710 66 aa11.56□□□□□ -0.56
LIME1-207ENST00000489212 OCIAD2Q56VL3 154 aa11.56□□□□□ -0.56
LIME1-207ENST00000489212 LCE2AQ5TA79 106 aaPredicted RBP11.56□□□□□ -0.56
LIME1-207ENST00000489212 IGFL1Q6UW32 110 aa11.56□□□□□ -0.56
LIME1-207ENST00000489212 FAM218AQ96MZ4 157 aa11.56□□□□□ -0.56
LIME1-207ENST00000489212 Q6JHZ5 121 aa11.55□□□□□ -0.56
LIME1-207ENST00000489212 TMA7Q9Y2S6 64 aaKnown RBP11.55□□□□□ -0.56
LIME1-207ENST00000489212 PPDPFLQ8WWR9 84 aa11.54□□□□□ -0.56
LIME1-207ENST00000489212 CLEC2BQ92478 149 aa11.53□□□□□ -0.56
LIME1-207ENST00000489212 H0YGX0 51 aa11.52□□□□□ -0.57
LIME1-207ENST00000489212 PRO1854Q9UHT4 67 aa11.52□□□□□ -0.57
LIME1-207ENST00000489212 TMEM238LA0A1B0GVL6 79 aa11.51□□□□□ -0.57
LIME1-207ENST00000489212 A6NJY4 79 aa11.51□□□□□ -0.57
LIME1-207ENST00000489212 TCL1BO95988 128 aa11.51□□□□□ -0.57
LIME1-207ENST00000489212 SNHG12Q9BXW3 62 aa11.51□□□□□ -0.57
LIME1-207ENST00000489212 TRBV7-7A0A0K0K1E9 115 aa11.49□□□□□ -0.57
LIME1-207ENST00000489212 H3BUT2 72 aa11.49□□□□□ -0.57
LIME1-207ENST00000489212 HSD52Q0P140 79 aa11.46□□□□□ -0.57
LIME1-207ENST00000489212 TRIAP1O43715 76 aa11.45□□□□□ -0.58
LIME1-207ENST00000489212 SNCGO76070 127 aa11.45□□□□□ -0.58
LIME1-207ENST00000489212 PCOTHQ58A44 107 aa11.44□□□□□ -0.58
LIME1-207ENST00000489212 K7ERJ3 54 aa11.43□□□□□ -0.58
LIME1-207ENST00000489212 A0A1B0GX51 115 aa11.42□□□□□ -0.58
LIME1-207ENST00000489212 NDUFV3P56181 108 aaKnown RBP11.41□□□□□ -0.58
LIME1-207ENST00000489212 UQCR10Q9UDW1 63 aa11.4□□□□□ -0.58
LIME1-207ENST00000489212 Q6Q795 121 aa11.36□□□□□ -0.59
LIME1-207ENST00000489212 FABP2P12104 132 aa11.35□□□□□ -0.59
LIME1-207ENST00000489212 RPL37P61927 97 aaKnown RBP11.34□□□□□ -0.59
LIME1-207ENST00000489212 H3BMG7 143 aa11.33□□□□□ -0.6
LIME1-207ENST00000489212 PSMB2P49721 201 aa11.33□□□□□ -0.6
LIME1-207ENST00000489212 LST1O00453 97 aa11.32□□□□□ -0.6
LIME1-207ENST00000489212 TEN1Q86WV5 123 aa11.32□□□□□ -0.6
LIME1-207ENST00000489212 GHRHP01286 108 aa11.31□□□□□ -0.6
LIME1-207ENST00000489212 KRTAP19-2Q3LHN2 52 aa11.3□□□□□ -0.6
LIME1-207ENST00000489212 LCE2CQ5TA81 110 aa11.29□□□□□ -0.6
LIME1-207ENST00000489212 SS18L2Q9UHA2 77 aa11.28□□□□□ -0.6
LIME1-207ENST00000489212 A0A087WSZ3 146 aa11.27□□□□□ -0.61
LIME1-207ENST00000489212 DNAL4O96015 105 aa11.27□□□□□ -0.61
LIME1-207ENST00000489212 COX6CP09669 75 aa11.27□□□□□ -0.61
LIME1-207ENST00000489212 ORMDL1Q9P0S3 153 aa11.27□□□□□ -0.61
LIME1-207ENST00000489212 A0A1W2PNM2 257 aa11.26□□□□□ -0.61
LIME1-207ENST00000489212 OBSCN-AS1Q96MR7 158 aa11.26□□□□□ -0.61
LIME1-207ENST00000489212 A0A1B0GV72 72 aa11.23□□□□□ -0.61
LIME1-207ENST00000489212 Q96NJ1 140 aa11.22□□□□□ -0.61
LIME1-207ENST00000489212 H3BQ85 93 aa11.21□□□□□ -0.61
LIME1-207ENST00000489212 TMEM256-PLSCR3K7ERE1 68 aa11.2□□□□□ -0.62
LIME1-207ENST00000489212 KRTAP9-2Q9BYQ4 174 aa11.2□□□□□ -0.62
LIME1-207ENST00000489212 ANKRD29Q8N6D5 301 aa11.19□□□□□ -0.62
LIME1-207ENST00000489212 TRACP01848 142 aa11.17□□□□□ -0.62
LIME1-207ENST00000489212 SCGB1C2P0DMR2 95 aa11.17□□□□□ -0.62
LIME1-207ENST00000489212 Q75L30 129 aa11.17□□□□□ -0.62
LIME1-207ENST00000489212 UBE2V1Q13404 147 aa11.15□□□□□ -0.62
LIME1-207ENST00000489212 TRBV7-4A0A0J9YYF1 115 aa11.14□□□□□ -0.63
LIME1-207ENST00000489212 MT1HP80294 61 aa11.12□□□□□ -0.63
LIME1-207ENST00000489212 CCKP06307 115 aa11.1□□□□□ -0.63
LIME1-207ENST00000489212 SMIM6P0DI80 62 aa11.1□□□□□ -0.63
LIME1-207ENST00000489212 ATP11AUNQ6ZP68 121 aa11.09□□□□□ -0.63
LIME1-207ENST00000489212 M0R143 59 aa11.08□□□□□ -0.64
LIME1-207ENST00000489212 C20orf166-AS1Q96NR2 134 aa11.08□□□□□ -0.64
LIME1-207ENST00000489212 SIGMAR1Q99720 223 aa11.08□□□□□ -0.64
LIME1-207ENST00000489212 DSCR10P59022 87 aa11.07□□□□□ -0.64
LIME1-207ENST00000489212 NAA38Q9BRA0 125 aaKnown RBP11.07□□□□□ -0.64
LIME1-207ENST00000489212 A8MUU9 505 aa11.06□□□□□ -0.64
LIME1-207ENST00000489212 BAALC-AS2P0C853 105 aa11.05□□□□□ -0.64
LIME1-207ENST00000489212 FLGP20930 4061 aaPredicted RBP11.05□□□□□ -0.64
LIME1-207ENST00000489212 IGKV4-1P06312 121 aa11.04□□□□□ -0.64
LIME1-207ENST00000489212 RBM3P98179 157 aaKnown RBP11.04□□□□□ -0.64
LIME1-207ENST00000489212 LINC00472Q9H8W2 130 aa11.04□□□□□ -0.64
LIME1-207ENST00000489212 DEFB116Q30KQ4 102 aa11.03□□□□□ -0.64
LIME1-207ENST00000489212 VPS25Q9BRG1 176 aa11.01□□□□□ -0.65
LIME1-207ENST00000489212 DSCR8Q96T75 97 aa10.99□□□□□ -0.65
LIME1-207ENST00000489212 LINC00313P59037 77 aa10.98□□□□□ -0.65
LIME1-207ENST00000489212 ATXN8Q156A1 80 aa10.98□□□□□ -0.65
LIME1-207ENST00000489212 COX6B2Q6YFQ2 88 aa10.98□□□□□ -0.65
LIME1-207ENST00000489212 NOTCH2NLQ7Z3S9 236 aa10.98□□□□□ -0.65
LIME1-207ENST00000489212 KRTAP16-1A8MUX0 517 aa10.97□□□□□ -0.65
LIME1-207ENST00000489212 LOC105371267A0A1B0GV96 52 aa10.94□□□□□ -0.66
LIME1-207ENST00000489212 C9JAW5 83 aa10.94□□□□□ -0.66
LIME1-207ENST00000489212 TSTD3H0UI37 97 aa10.93□□□□□ -0.66
LIME1-207ENST00000489212 IGHV6-1A0A0B4J1U7 121 aa10.91□□□□□ -0.66
LIME1-207ENST00000489212 BATFQ16520 125 aa10.91□□□□□ -0.66
LIME1-207ENST00000489212 LCE2DQ5TA82 110 aaPredicted RBP10.9□□□□□ -0.66
LIME1-207ENST00000489212 LORP23490 312 aaPredicted RBP10.89□□□□□ -0.67
LIME1-207ENST00000489212 KRTAP10-6P60371 365 aaPredicted RBP10.89□□□□□ -0.67
LIME1-207ENST00000489212 Q6ZQT0 140 aa10.88□□□□□ -0.67
LIME1-207ENST00000489212 JMJD7-PLA2G4BH0Y9G9 81 aa10.87□□□□□ -0.67
LIME1-207ENST00000489212 M0R2T5 61 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms