RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 Q8NAQ8 132 aa4.02□□□□□ -1.77
VPS13D-209ENST00000487188 CDC42SE1Q9NRR8 79 aa4.02□□□□□ -1.77
VPS13D-209ENST00000487188 TNP2Q05952 138 aa4.02□□□□□ -1.77
VPS13D-209ENST00000487188 IGFL1Q6UW32 110 aa4.02□□□□□ -1.77
VPS13D-209ENST00000487188 DNHD1Q96M86 4753 aa4.02□□□□□ -1.77
VPS13D-209ENST00000487188 REG3GQ6UW15 175 aa4.01□□□□□ -1.77
VPS13D-209ENST00000487188 MXRA5Q9NR99 2828 aa4.01□□□□□ -1.77
VPS13D-209ENST00000487188 IGLV1-50A0A075B6I6 118 aa4.01□□□□□ -1.77
VPS13D-209ENST00000487188 LCA10Q71F78 164 aa4.01□□□□□ -1.77
VPS13D-209ENST00000487188 TEP1Q99973 2627 aaKnown RBP4.01□□□□□ -1.77
VPS13D-209ENST00000487188 FLNAP21333 2647 aaKnown RBP4□□□□□ -1.77
VPS13D-209ENST00000487188 KRTAP1-1Q07627 177 aa4□□□□□ -1.77
VPS13D-209ENST00000487188 A0A096LNI7 61 aa4□□□□□ -1.77
VPS13D-209ENST00000487188 PRLHP81277 87 aa4□□□□□ -1.77
VPS13D-209ENST00000487188 ANK2Q01484 3957 aa3.99□□□□□ -1.77
VPS13D-209ENST00000487188 NSD1Q96L73 2696 aaPredicted RBP3.99□□□□□ -1.77
VPS13D-209ENST00000487188 A6NN06 94 aa3.98□□□□□ -1.77
VPS13D-209ENST00000487188 NIPBLQ6KC79 2804 aaeCLIP3.98□□□□□ -1.77
VPS13D-209ENST00000487188 IGKV2-24A0A0C4DH68 120 aa3.98□□□□□ -1.77
VPS13D-209ENST00000487188 PHF5AQ7RTV0 110 aaKnown RBP3.98□□□□□ -1.77
VPS13D-209ENST00000487188 CDK2AP2O75956 126 aa3.98□□□□□ -1.77
VPS13D-209ENST00000487188 SMR3AQ99954 134 aa3.98□□□□□ -1.77
VPS13D-209ENST00000487188 A8MWP4 228 aa3.97□□□□□ -1.77
VPS13D-209ENST00000487188 MOBPQ13875 183 aa3.97□□□□□ -1.77
VPS13D-209ENST00000487188 KRTAP26-1Q6PEX3 210 aa3.97□□□□□ -1.77
VPS13D-209ENST00000487188 PLA2G2DQ9UNK4 145 aa3.97□□□□□ -1.77
VPS13D-209ENST00000487188 LINC01556Q5JQF7 62 aa3.96□□□□□ -1.77
VPS13D-209ENST00000487188 SPRR1AP35321 89 aa3.96□□□□□ -1.78
VPS13D-209ENST00000487188 KRTAP21-3Q3LHN1 58 aa3.96□□□□□ -1.78
VPS13D-209ENST00000487188 IGLV7-46A0A075B6I9 117 aa3.96□□□□□ -1.78
VPS13D-209ENST00000487188 CNBPP62633 177 aaKnown RBP3.96□□□□□ -1.78
VPS13D-209ENST00000487188 FBN1P35555 2871 aaKnown RBP3.96□□□□□ -1.78
VPS13D-209ENST00000487188 DEFB131BA0A096LNP1 70 aa3.95□□□□□ -1.78
VPS13D-209ENST00000487188 KRTAP29-1A8MX34 341 aaPredicted RBP3.95□□□□□ -1.78
VPS13D-209ENST00000487188 KRTAP4-16G5E9R7 235 aaPredicted RBP3.95□□□□□ -1.78
VPS13D-209ENST00000487188 TLX1NBP0CAT3 122 aa3.95□□□□□ -1.78
VPS13D-209ENST00000487188 C4orf48Q5BLP8 95 aa3.95□□□□□ -1.78
VPS13D-209ENST00000487188 C11orf45Q8TAV5 145 aa3.95□□□□□ -1.78
VPS13D-209ENST00000487188 LINC01558Q9Y6Z2 57 aa3.95□□□□□ -1.78
VPS13D-209ENST00000487188 IGLV5-37A0A075B6J1 123 aa3.95□□□□□ -1.78
VPS13D-209ENST00000487188 C9orf163Q8N9P6 203 aa3.95□□□□□ -1.78
VPS13D-209ENST00000487188 H3BNG1 76 aa3.94□□□□□ -1.78
VPS13D-209ENST00000487188 SPINK7P58062 85 aa3.94□□□□□ -1.78
VPS13D-209ENST00000487188 TP53AIP1Q9HCN2 124 aa3.94□□□□□ -1.78
VPS13D-209ENST00000487188 CMYA5Q8N3K9 4069 aa3.93□□□□□ -1.78
VPS13D-209ENST00000487188 ATRQ13535 2644 aa3.93□□□□□ -1.78
VPS13D-209ENST00000487188 C8orf87E5RJ46 101 aa3.93□□□□□ -1.78
VPS13D-209ENST00000487188 KRTAP10-3P60369 221 aa3.93□□□□□ -1.78
VPS13D-209ENST00000487188 MGAM2Q2M2H8 2515 aa3.93□□□□□ -1.78
VPS13D-209ENST00000487188 PRAC1Q96KF2 57 aa3.92□□□□□ -1.78
VPS13D-209ENST00000487188 IGHV6-1A0A0B4J1U7 121 aa3.91□□□□□ -1.78
VPS13D-209ENST00000487188 MMP24-AS1A0A0U1RRL7 71 aa3.91□□□□□ -1.78
VPS13D-209ENST00000487188 LINC00313P59037 77 aa3.91□□□□□ -1.78
VPS13D-209ENST00000487188 CASC10Q5T4H9 136 aa3.91□□□□□ -1.78
VPS13D-209ENST00000487188 IGLV8-61A0A075B6I0 122 aa3.9□□□□□ -1.79
VPS13D-209ENST00000487188 IGLV9-49A0A0B4J1Y8 123 aa3.9□□□□□ -1.79
VPS13D-209ENST00000487188 DNAH10OSP0CZ25 163 aa3.89□□□□□ -1.79
VPS13D-209ENST00000487188 HRES1P13985 223 aa3.89□□□□□ -1.79
VPS13D-209ENST00000487188 LINC00472Q9H8W2 130 aa3.89□□□□□ -1.79
VPS13D-209ENST00000487188 MDFIQ99750 246 aa3.89□□□□□ -1.79
VPS13D-209ENST00000487188 PRR26Q8N8Z3 221 aa3.88□□□□□ -1.79
VPS13D-209ENST00000487188 C8orf17Q9NRJ1 99 aa3.88□□□□□ -1.79
VPS13D-209ENST00000487188 H3BS24 57 aa3.88□□□□□ -1.79
VPS13D-209ENST00000487188 KRTAP7-1Q8IUC3 87 aa3.88□□□□□ -1.79
VPS13D-209ENST00000487188 LINC01554Q52M75 96 aa3.87□□□□□ -1.79
VPS13D-209ENST00000487188 A0A1B0GU69 56 aa3.87□□□□□ -1.79
VPS13D-209ENST00000487188 STAB1Q9NY15 2570 aa3.86□□□□□ -1.79
VPS13D-209ENST00000487188 ACYP2P14621 99 aa3.86□□□□□ -1.79
VPS13D-209ENST00000487188 MRPL34Q9BQ48 92 aaKnown RBP3.86□□□□□ -1.79
VPS13D-209ENST00000487188 OXLD1Q5BKU9 147 aa3.85□□□□□ -1.79
VPS13D-209ENST00000487188 SPINK6Q6UWN8 80 aa3.85□□□□□ -1.79
VPS13D-209ENST00000487188 TRRAPQ9Y4A5 3859 aa3.84□□□□□ -1.79
VPS13D-209ENST00000487188 UBE2DNLQ8IWF7 75 aa3.84□□□□□ -1.79
VPS13D-209ENST00000487188 A0A1B0GVX0 72 aa3.84□□□□□ -1.79
VPS13D-209ENST00000487188 CHTF8P0CG12 524 aa3.84□□□□□ -1.79
VPS13D-209ENST00000487188 ADM2Q7Z4H4 148 aa3.84□□□□□ -1.79
VPS13D-209ENST00000487188 PLAC8Q9NZF1 115 aa3.84□□□□□ -1.79
VPS13D-209ENST00000487188 Q6ZR54 194 aa3.83□□□□□ -1.8
VPS13D-209ENST00000487188 KRTAP24-1Q3LI83 254 aa3.83□□□□□ -1.8
VPS13D-209ENST00000487188 TENM1Q9UKZ4 2725 aa3.82□□□□□ -1.8
VPS13D-209ENST00000487188 SPRR1BP22528 89 aa3.82□□□□□ -1.8
VPS13D-209ENST00000487188 RETNLBQ9BQ08 111 aa3.82□□□□□ -1.8
VPS13D-209ENST00000487188 DNAH3Q8TD57 4116 aa3.82□□□□□ -1.8
VPS13D-209ENST00000487188 COL6A5A8TX70 2615 aa3.82□□□□□ -1.8
VPS13D-209ENST00000487188 C14orf177Q52M58 125 aa3.82□□□□□ -1.8
VPS13D-209ENST00000487188 MIR22HGQ0VDD5 57 aa3.81□□□□□ -1.8
VPS13D-209ENST00000487188 UQCR11O14957 56 aa3.8□□□□□ -1.8
VPS13D-209ENST00000487188 PLA2G1BP04054 148 aaKnown RBP3.8□□□□□ -1.8
VPS13D-209ENST00000487188 ZNF706Q9Y5V0 76 aaPredicted RBP3.79□□□□□ -1.8
VPS13D-209ENST00000487188 FBN3Q75N90 2809 aa3.78□□□□□ -1.8
VPS13D-209ENST00000487188 K7EIL1 84 aa3.78□□□□□ -1.8
VPS13D-209ENST00000487188 CSAG1Q6PB30 78 aa3.78□□□□□ -1.81
VPS13D-209ENST00000487188 NBEAL1Q6ZS30 2694 aa3.77□□□□□ -1.81
VPS13D-209ENST00000487188 ASB16-AS1Q495Z4 193 aa3.77□□□□□ -1.81
VPS13D-209ENST00000487188 KRTAP10-11P60412 298 aa3.77□□□□□ -1.81
VPS13D-209ENST00000487188 KRTAP11-1Q8IUC1 163 aa3.77□□□□□ -1.81
VPS13D-209ENST00000487188 VWFP04275 2813 aa3.76□□□□□ -1.81
VPS13D-209ENST00000487188 PRKDCP78527 4128 aaKnown RBP3.76□□□□□ -1.81
VPS13D-209ENST00000487188 PKD1L1Q8TDX9 2849 aa3.76□□□□□ -1.81
VPS13D-209ENST00000487188 Q96NJ1 140 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms