RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 LINC00483Q53H64 154 aa10.04□□□□□ -0.8
COL7A1-210ENST00000487017 Q5VV11 94 aa10.03□□□□□ -0.8
COL7A1-210ENST00000487017 HTTP42858 3142 aa10.03□□□□□ -0.8
COL7A1-210ENST00000487017 OXTP01178 125 aa10.01□□□□□ -0.81
COL7A1-210ENST00000487017 ZCCHC13Q8WW36 166 aaKnown RBP10.01□□□□□ -0.81
COL7A1-210ENST00000487017 Q5W150 140 aa9.99□□□□□ -0.81
COL7A1-210ENST00000487017 KRTAP1-5Q9BYS1 174 aa9.96□□□□□ -0.82
COL7A1-210ENST00000487017 CSAG1Q6PB30 78 aa9.95□□□□□ -0.82
COL7A1-210ENST00000487017 A0A0C4DFX4 3053 aa9.95□□□□□ -0.82
COL7A1-210ENST00000487017 S4R3F8 94 aa9.94□□□□□ -0.82
COL7A1-210ENST00000487017 SPINK7P58062 85 aa9.92□□□□□ -0.82
COL7A1-210ENST00000487017 TRANK1O15050 2925 aa9.91□□□□□ -0.82
COL7A1-210ENST00000487017 CFAP54Q96N23 3096 aa9.9□□□□□ -0.82
COL7A1-210ENST00000487017 MAST4O15021 2626 aa9.89□□□□□ -0.83
COL7A1-210ENST00000487017 HELZ2Q9BYK8 2649 aaKnown RBP9.89□□□□□ -0.83
COL7A1-210ENST00000487017 DMAC1Q96GE9 116 aa9.88□□□□□ -0.83
COL7A1-210ENST00000487017 KRTAP4-16G5E9R7 235 aaPredicted RBP9.87□□□□□ -0.83
COL7A1-210ENST00000487017 CFAP46Q8IYW2 2715 aa9.86□□□□□ -0.83
COL7A1-210ENST00000487017 RANBP2P49792 3224 aaKnown RBP9.84□□□□□ -0.83
COL7A1-210ENST00000487017 CENPEQ02224 2701 aa9.82□□□□□ -0.84
COL7A1-210ENST00000487017 MGAQ8IWI9 3026 aa9.82□□□□□ -0.84
COL7A1-210ENST00000487017 R4GN34 69 aa9.82□□□□□ -0.84
COL7A1-210ENST00000487017 MKI67P46013 3256 aaKnown RBP9.81□□□□□ -0.84
COL7A1-210ENST00000487017 KRTAP29-1A8MX34 341 aaPredicted RBP9.79□□□□□ -0.84
COL7A1-210ENST00000487017 Q6ZR54 194 aa9.79□□□□□ -0.84
COL7A1-210ENST00000487017 CHD6Q8TD26 2715 aa9.77□□□□□ -0.85
COL7A1-210ENST00000487017 AKAP13Q12802 2813 aa9.75□□□□□ -0.85
COL7A1-210ENST00000487017 A0A0A0MQY5 61 aa9.74□□□□□ -0.85
COL7A1-210ENST00000487017 LAMA3Q16787 3333 aa9.72□□□□□ -0.85
COL7A1-210ENST00000487017 ZNF292O60281 2723 aa9.71□□□□□ -0.86
COL7A1-210ENST00000487017 PANO1I0J062 215 aa9.71□□□□□ -0.86
COL7A1-210ENST00000487017 LAMA2P24043 3122 aaKnown RBP9.69□□□□□ -0.86
COL7A1-210ENST00000487017 KRTAP10-1P60331 282 aa9.69□□□□□ -0.86
COL7A1-210ENST00000487017 GCN1Q92616 2671 aaKnown RBP9.68□□□□□ -0.86
COL7A1-210ENST00000487017 KRTAP10-2P60368 255 aa9.67□□□□□ -0.86
COL7A1-210ENST00000487017 Q5VSD8 79 aa9.67□□□□□ -0.86
COL7A1-210ENST00000487017 SEC61BP60468 96 aaKnown RBP9.65□□□□□ -0.86
COL7A1-210ENST00000487017 M0QZ58 72 aa9.65□□□□□ -0.86
COL7A1-210ENST00000487017 FLG2Q5D862 2391 aaPredicted RBP9.64□□□□□ -0.87
COL7A1-210ENST00000487017 RPL37P61927 97 aaKnown RBP9.64□□□□□ -0.87
COL7A1-210ENST00000487017 H1FX-AS1Q4G0G2 97 aa9.62□□□□□ -0.87
COL7A1-210ENST00000487017 ROMO1P60602 79 aa9.62□□□□□ -0.87
COL7A1-210ENST00000487017 UNC79Q9P2D8 2635 aa9.62□□□□□ -0.87
COL7A1-210ENST00000487017 WDFY4Q6ZS81 3184 aa9.6□□□□□ -0.87
COL7A1-210ENST00000487017 TEX15Q9BXT5 2789 aa9.59□□□□□ -0.87
COL7A1-210ENST00000487017 BRCA2P51587 3418 aa9.59□□□□□ -0.87
COL7A1-210ENST00000487017 STAB1Q9NY15 2570 aa9.58□□□□□ -0.88
COL7A1-210ENST00000487017 NBEAL1Q6ZS30 2694 aa9.58□□□□□ -0.88
COL7A1-210ENST00000487017 TRIOO75962 3097 aa9.57□□□□□ -0.88
COL7A1-210ENST00000487017 ASB16-AS1Q495Z4 193 aa9.57□□□□□ -0.88
COL7A1-210ENST00000487017 SPATA8Q6RVD6 105 aa9.57□□□□□ -0.88
COL7A1-210ENST00000487017 A0A087X002 238 aa9.57□□□□□ -0.88
COL7A1-210ENST00000487017 NOTCH2NLQ7Z3S9 236 aa9.57□□□□□ -0.88
COL7A1-210ENST00000487017 LCE6AA0A183 80 aa9.56□□□□□ -0.88
COL7A1-210ENST00000487017 KRTAP11-1Q8IUC1 163 aa9.55□□□□□ -0.88
COL7A1-210ENST00000487017 ADM2Q7Z4H4 148 aa9.53□□□□□ -0.88
COL7A1-210ENST00000487017 KRTAP7-1Q8IUC3 87 aa9.53□□□□□ -0.88
COL7A1-210ENST00000487017 NBEAL2Q6ZNJ1 2754 aa9.5□□□□□ -0.89
COL7A1-210ENST00000487017 UNC80Q8N2C7 3258 aa9.48□□□□□ -0.89
COL7A1-210ENST00000487017 PLAC4Q8WY50 150 aa9.48□□□□□ -0.89
COL7A1-210ENST00000487017 FRYQ5TBA9 3013 aa9.47□□□□□ -0.89
COL7A1-210ENST00000487017 A6NN06 94 aa9.47□□□□□ -0.89
COL7A1-210ENST00000487017 TEP1Q99973 2627 aaKnown RBP9.45□□□□□ -0.9
COL7A1-210ENST00000487017 PRUNE2Q8WUY3 3088 aa9.45□□□□□ -0.9
COL7A1-210ENST00000487017 SETXQ7Z333 2677 aaKnown RBP9.44□□□□□ -0.9
COL7A1-210ENST00000487017 Q6ZRN7 208 aaPredicted RBP9.44□□□□□ -0.9
COL7A1-210ENST00000487017 VPS13AQ96RL7 3174 aa9.43□□□□□ -0.9
COL7A1-210ENST00000487017 KRTAP16-1A8MUX0 517 aa9.43□□□□□ -0.9
COL7A1-210ENST00000487017 DSPP15924 2871 aaKnown RBP9.42□□□□□ -0.9
COL7A1-210ENST00000487017 XIRP2A4UGR9 3374 aa9.41□□□□□ -0.9
COL7A1-210ENST00000487017 COL6A5A8TX70 2615 aa9.41□□□□□ -0.9
COL7A1-210ENST00000487017 NOTCH1P46531 2555 aa9.41□□□□□ -0.9
COL7A1-210ENST00000487017 IGSF10Q6WRI0 2623 aa9.39□□□□□ -0.91
COL7A1-210ENST00000487017 KRTAP13-1Q8IUC0 172 aa9.39□□□□□ -0.91
COL7A1-210ENST00000487017 RPS29P62273 56 aaKnown RBP9.37□□□□□ -0.91
COL7A1-210ENST00000487017 MAP1AP78559 2803 aaPredicted RBP9.37□□□□□ -0.91
COL7A1-210ENST00000487017 DMBT1Q9UGM3 2413 aaPredicted RBP9.34□□□□□ -0.91
COL7A1-210ENST00000487017 CDH23Q9H251 3354 aa9.34□□□□□ -0.91
COL7A1-210ENST00000487017 A8MU10 97 aa9.32□□□□□ -0.92
COL7A1-210ENST00000487017 KRTAP25-1Q3LHN0 102 aa9.32□□□□□ -0.92
COL7A1-210ENST00000487017 KRTAP13-2Q52LG2 175 aa9.29□□□□□ -0.92
COL7A1-210ENST00000487017 UBR5O95071 2799 aaPredicted RBP9.29□□□□□ -0.92
COL7A1-210ENST00000487017 CELSR3Q9NYQ7 3312 aa9.27□□□□□ -0.92
COL7A1-210ENST00000487017 KALRNO60229 2985 aa9.26□□□□□ -0.93
COL7A1-210ENST00000487017 STAB2Q8WWQ8 2551 aa9.24□□□□□ -0.93
COL7A1-210ENST00000487017 FREM2Q5SZK8 3169 aa9.21□□□□□ -0.93
COL7A1-210ENST00000487017 NDUFAF8A1L188 74 aa9.21□□□□□ -0.94
COL7A1-210ENST00000487017 C20orf166-AS1Q96NR2 134 aa9.19□□□□□ -0.94
COL7A1-210ENST00000487017 A8MUU9 505 aa9.18□□□□□ -0.94
COL7A1-210ENST00000487017 ITPR2Q14571 2701 aa9.18□□□□□ -0.94
COL7A1-210ENST00000487017 NSD1Q96L73 2696 aaPredicted RBP9.17□□□□□ -0.94
COL7A1-210ENST00000487017 ITPR1Q14643 2758 aa9.17□□□□□ -0.94
COL7A1-210ENST00000487017 DNAH14Q0VDD8 3507 aa9.16□□□□□ -0.94
COL7A1-210ENST00000487017 LAMA1P25391 3075 aa9.15□□□□□ -0.94
COL7A1-210ENST00000487017 VCANP13611 3396 aa9.14□□□□□ -0.95
COL7A1-210ENST00000487017 NBEAQ8NFP9 2946 aa9.14□□□□□ -0.95
COL7A1-210ENST00000487017 BAHCC1Q9P281 2608 aa9.11□□□□□ -0.95
COL7A1-210ENST00000487017 SZT2Q5T011 3432 aa9.1□□□□□ -0.95
COL7A1-210ENST00000487017 ATMQ13315 3056 aa9.09□□□□□ -0.95
COL7A1-210ENST00000487017 LRBAP50851 2863 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms