RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 CASC2Q6XLA1 102 aa6.72□□□□□ -1.33
CCDC171-208ENST00000486641 A6NED7 52 aa6.72□□□□□ -1.33
CCDC171-208ENST00000486641 H3BNG1 76 aa6.71□□□□□ -1.33
CCDC171-208ENST00000486641 OTOGQ6ZRI0 2925 aa6.71□□□□□ -1.33
CCDC171-208ENST00000486641 LOC101927531A0A1B0GV80 90 aa6.71□□□□□ -1.34
CCDC171-208ENST00000486641 A6NN06 94 aa6.71□□□□□ -1.34
CCDC171-208ENST00000486641 CNBPP62633 177 aaKnown RBP6.71□□□□□ -1.34
CCDC171-208ENST00000486641 LINC01556Q5JQF7 62 aa6.71□□□□□ -1.34
CCDC171-208ENST00000486641 J3QKU1 62 aa6.7□□□□□ -1.34
CCDC171-208ENST00000486641 COA5Q86WW8 74 aa6.7□□□□□ -1.34
CCDC171-208ENST00000486641 REG3GQ6UW15 175 aa6.7□□□□□ -1.34
CCDC171-208ENST00000486641 NDUFS5O43920 106 aa6.68□□□□□ -1.34
CCDC171-208ENST00000486641 CASC10Q5T4H9 136 aa6.68□□□□□ -1.34
CCDC171-208ENST00000486641 PHF5AQ7RTV0 110 aaKnown RBP6.68□□□□□ -1.34
CCDC171-208ENST00000486641 IGLV8-61A0A075B6I0 122 aa6.67□□□□□ -1.34
CCDC171-208ENST00000486641 IGLV7-46A0A075B6I9 117 aa6.66□□□□□ -1.34
CCDC171-208ENST00000486641 CDC42SE1Q9NRR8 79 aa6.66□□□□□ -1.34
CCDC171-208ENST00000486641 F8P00451 2351 aa6.66□□□□□ -1.34
CCDC171-208ENST00000486641 TRRAPQ9Y4A5 3859 aa6.66□□□□□ -1.34
CCDC171-208ENST00000486641 PRLHP81277 87 aa6.66□□□□□ -1.34
CCDC171-208ENST00000486641 TENM4Q6N022 2769 aa6.66□□□□□ -1.34
CCDC171-208ENST00000486641 A8MWP4 228 aa6.65□□□□□ -1.35
CCDC171-208ENST00000486641 PDZD2O15018 2839 aa6.64□□□□□ -1.35
CCDC171-208ENST00000486641 LINC00472Q9H8W2 130 aa6.64□□□□□ -1.35
CCDC171-208ENST00000486641 MOBPQ13875 183 aa6.63□□□□□ -1.35
CCDC171-208ENST00000486641 SPAG11AQ6PDA7 123 aa6.63□□□□□ -1.35
CCDC171-208ENST00000486641 PCOTHQ58A44 107 aa6.62□□□□□ -1.35
CCDC171-208ENST00000486641 SMR3AQ99954 134 aa6.62□□□□□ -1.35
CCDC171-208ENST00000486641 TENM1Q9UKZ4 2725 aa6.62□□□□□ -1.35
CCDC171-208ENST00000486641 DNAH10OSP0CZ25 163 aa6.62□□□□□ -1.35
CCDC171-208ENST00000486641 LINC01558Q9Y6Z2 57 aa6.62□□□□□ -1.35
CCDC171-208ENST00000486641 PLAC8Q9NZF1 115 aa6.61□□□□□ -1.35
CCDC171-208ENST00000486641 C7orf65Q6ZTY9 151 aa6.6□□□□□ -1.35
CCDC171-208ENST00000486641 DNAH1Q9P2D7 4330 aa6.6□□□□□ -1.35
CCDC171-208ENST00000486641 DEFB131BA0A096LNP1 70 aa6.6□□□□□ -1.35
CCDC171-208ENST00000486641 MMP24-AS1A0A0U1RRL7 71 aa6.6□□□□□ -1.35
CCDC171-208ENST00000486641 H0Y9J4 135 aa6.6□□□□□ -1.35
CCDC171-208ENST00000486641 SPINK7P58062 85 aa6.59□□□□□ -1.36
CCDC171-208ENST00000486641 SRRM2Q9UQ35 2752 aaKnown RBP6.58□□□□□ -1.36
CCDC171-208ENST00000486641 TENM2Q9NT68 2774 aa6.57□□□□□ -1.36
CCDC171-208ENST00000486641 HELZ2Q9BYK8 2649 aaKnown RBP6.57□□□□□ -1.36
CCDC171-208ENST00000486641 BAHCC1Q9P281 2608 aa6.57□□□□□ -1.36
CCDC171-208ENST00000486641 A0A096LNI7 61 aa6.55□□□□□ -1.36
CCDC171-208ENST00000486641 IGKV2-24A0A0C4DH68 120 aa6.55□□□□□ -1.36
CCDC171-208ENST00000486641 HRES1P13985 223 aa6.54□□□□□ -1.36
CCDC171-208ENST00000486641 CSMD3Q7Z407 3707 aa6.54□□□□□ -1.36
CCDC171-208ENST00000486641 KRTAP11-1Q8IUC1 163 aa6.54□□□□□ -1.36
CCDC171-208ENST00000486641 TEP1Q99973 2627 aaKnown RBP6.54□□□□□ -1.36
CCDC171-208ENST00000486641 TENM3Q9P273 2699 aa6.53□□□□□ -1.36
CCDC171-208ENST00000486641 C11orf45Q8TAV5 145 aa6.53□□□□□ -1.36
CCDC171-208ENST00000486641 ITPR2Q14571 2701 aa6.53□□□□□ -1.36
CCDC171-208ENST00000486641 ANK2Q01484 3957 aa6.53□□□□□ -1.36
CCDC171-208ENST00000486641 SPRR1BP22528 89 aa6.53□□□□□ -1.36
CCDC171-208ENST00000486641 NOTCH2Q04721 2471 aa6.52□□□□□ -1.37
CCDC171-208ENST00000486641 ASB16-AS1Q495Z4 193 aa6.51□□□□□ -1.37
CCDC171-208ENST00000486641 Q6ZR54 194 aa6.51□□□□□ -1.37
CCDC171-208ENST00000486641 TP53AIP1Q9HCN2 124 aa6.51□□□□□ -1.37
CCDC171-208ENST00000486641 KRTAP10-11P60412 298 aa6.5□□□□□ -1.37
CCDC171-208ENST00000486641 Q96NJ1 140 aa6.49□□□□□ -1.37
CCDC171-208ENST00000486641 ATRQ13535 2644 aa6.48□□□□□ -1.37
CCDC171-208ENST00000486641 FBN1P35555 2871 aaKnown RBP6.48□□□□□ -1.37
CCDC171-208ENST00000486641 C8orf17Q9NRJ1 99 aa6.48□□□□□ -1.37
CCDC171-208ENST00000486641 DNAH10Q8IVF4 4471 aa6.48□□□□□ -1.37
CCDC171-208ENST00000486641 LINC00313P59037 77 aa6.47□□□□□ -1.37
CCDC171-208ENST00000486641 C8orf87E5RJ46 101 aa6.47□□□□□ -1.37
CCDC171-208ENST00000486641 PRR26Q8N8Z3 221 aa6.46□□□□□ -1.38
CCDC171-208ENST00000486641 PRAC1Q96KF2 57 aa6.45□□□□□ -1.38
CCDC171-208ENST00000486641 INAFM1C9JVW0 142 aa6.45□□□□□ -1.38
CCDC171-208ENST00000486641 CHTF8P0CG12 524 aa6.45□□□□□ -1.38
CCDC171-208ENST00000486641 HECTD1Q9ULT8 2610 aa6.44□□□□□ -1.38
CCDC171-208ENST00000486641 IGHV6-1A0A0B4J1U7 121 aa6.44□□□□□ -1.38
CCDC171-208ENST00000486641 LYSTQ99698 3801 aa6.43□□□□□ -1.38
CCDC171-208ENST00000486641 FASNP49327 2511 aaKnown RBP6.42□□□□□ -1.38
CCDC171-208ENST00000486641 LCE2DQ5TA82 110 aaPredicted RBP6.42□□□□□ -1.38
CCDC171-208ENST00000486641 ADM2Q7Z4H4 148 aa6.42□□□□□ -1.38
CCDC171-208ENST00000486641 IGLV9-49A0A0B4J1Y8 123 aa6.42□□□□□ -1.38
CCDC171-208ENST00000486641 K7EIL1 84 aa6.42□□□□□ -1.38
CCDC171-208ENST00000486641 ALMS1Q8TCU4 4167 aa6.41□□□□□ -1.38
CCDC171-208ENST00000486641 A0A1B0GVX0 72 aa6.41□□□□□ -1.38
CCDC171-208ENST00000486641 MRPL34Q9BQ48 92 aaKnown RBP6.41□□□□□ -1.38
CCDC171-208ENST00000486641 A0A087X002 238 aa6.41□□□□□ -1.38
CCDC171-208ENST00000486641 NOTCH2NLQ7Z3S9 236 aa6.41□□□□□ -1.38
CCDC171-208ENST00000486641 FLNBO75369 2602 aaKnown RBP6.39□□□□□ -1.39
CCDC171-208ENST00000486641 PLA2G1BP04054 148 aaKnown RBP6.38□□□□□ -1.39
CCDC171-208ENST00000486641 KRTAP1-5Q9BYS1 174 aa6.38□□□□□ -1.39
CCDC171-208ENST00000486641 DNAH9Q9NYC9 4486 aa6.37□□□□□ -1.39
CCDC171-208ENST00000486641 MDFIQ99750 246 aa6.37□□□□□ -1.39
CCDC171-208ENST00000486641 Q5W150 140 aa6.37□□□□□ -1.39
CCDC171-208ENST00000486641 KRTAP13-1Q8IUC0 172 aa6.37□□□□□ -1.39
CCDC171-208ENST00000486641 COL7A1Q02388 2944 aa6.36□□□□□ -1.39
CCDC171-208ENST00000486641 CDK2AP2O75956 126 aa6.36□□□□□ -1.39
CCDC171-208ENST00000486641 CMYA5Q8N3K9 4069 aa6.36□□□□□ -1.39
CCDC171-208ENST00000486641 NSD1Q96L73 2696 aaPredicted RBP6.35□□□□□ -1.39
CCDC171-208ENST00000486641 ACYP2P14621 99 aa6.35□□□□□ -1.39
CCDC171-208ENST00000486641 LINC01554Q52M75 96 aa6.34□□□□□ -1.39
CCDC171-208ENST00000486641 KRTAP13-3Q3SY46 172 aa6.33□□□□□ -1.4
CCDC171-208ENST00000486641 PANO1I0J062 215 aa6.32□□□□□ -1.4
CCDC171-208ENST00000486641 MAST4O15021 2626 aa6.32□□□□□ -1.4
CCDC171-208ENST00000486641 RTL8CO15255 209 aa6.32□□□□□ -1.4
CCDC171-208ENST00000486641 SPATA8Q6RVD6 105 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms