RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 UQCR10Q9UDW1 63 aa4.76□□□□□ -1.65
USP40-216ENST00000485943 KRTAP4-16G5E9R7 235 aaPredicted RBP4.75□□□□□ -1.65
USP40-216ENST00000485943 PYY3Q5JQD4 70 aa4.75□□□□□ -1.65
USP40-216ENST00000485943 CEND1Q8N111 149 aa4.75□□□□□ -1.65
USP40-216ENST00000485943 C3orf22Q8N5N4 141 aa4.75□□□□□ -1.65
USP40-216ENST00000485943 Q8NBF4 154 aa4.75□□□□□ -1.65
USP40-216ENST00000485943 MPLKIPQ8TAP9 179 aa4.75□□□□□ -1.65
USP40-216ENST00000485943 Q9BRP9 147 aa4.75□□□□□ -1.65
USP40-216ENST00000485943 TEX49A0A1B0GTD5 131 aa4.74□□□□□ -1.65
USP40-216ENST00000485943 hADV29S1A0JD25 119 aa4.74□□□□□ -1.65
USP40-216ENST00000485943 ERC2-IT1O76042 136 aa4.74□□□□□ -1.65
USP40-216ENST00000485943 COX6CP09669 75 aa4.74□□□□□ -1.65
USP40-216ENST00000485943 HSD52Q0P140 79 aa4.74□□□□□ -1.65
USP40-216ENST00000485943 KRTAP4-2Q9BYR5 136 aa4.74□□□□□ -1.65
USP40-216ENST00000485943 LRP1Q07954 4544 aaKnown RBP4.73□□□□□ -1.65
USP40-216ENST00000485943 DNAL4O96015 105 aa4.73□□□□□ -1.65
USP40-216ENST00000485943 SSBP3-AS1Q7Z2R9 100 aa4.73□□□□□ -1.65
USP40-216ENST00000485943 ST20-AS1Q8NBB2 130 aa4.73□□□□□ -1.65
USP40-216ENST00000485943 SNHG12Q9BXW3 62 aa4.73□□□□□ -1.65
USP40-216ENST00000485943 FAT3Q8TDW7 4589 aa4.73□□□□□ -1.65
USP40-216ENST00000485943 A0A0B4J2C4 111 aa4.72□□□□□ -1.65
USP40-216ENST00000485943 SPINK1P00995 79 aa4.72□□□□□ -1.65
USP40-216ENST00000485943 KRTAP13-2Q52LG2 175 aa4.72□□□□□ -1.65
USP40-216ENST00000485943 LIMD2Q9BT23 127 aa4.72□□□□□ -1.65
USP40-216ENST00000485943 PRO1854Q9UHT4 67 aa4.72□□□□□ -1.65
USP40-216ENST00000485943 TSTD3H0UI37 97 aa4.71□□□□□ -1.66
USP40-216ENST00000485943 H0YGX0 51 aa4.71□□□□□ -1.66
USP40-216ENST00000485943 SCGB1C2P0DMR2 95 aa4.71□□□□□ -1.66
USP40-216ENST00000485943 LINC00483Q53H64 154 aa4.71□□□□□ -1.66
USP40-216ENST00000485943 HRCT1Q6UXD1 115 aa4.71□□□□□ -1.66
USP40-216ENST00000485943 PRO1933Q9H354 126 aa4.71□□□□□ -1.66
USP40-216ENST00000485943 CFC1BP0CG36 223 aa4.7□□□□□ -1.66
USP40-216ENST00000485943 CFC1P0CG37 223 aa4.7□□□□□ -1.66
USP40-216ENST00000485943 Q6ZQY7 126 aa4.7□□□□□ -1.66
USP40-216ENST00000485943 HERC1Q15751 4861 aa4.69□□□□□ -1.66
USP40-216ENST00000485943 M0R143 59 aa4.69□□□□□ -1.66
USP40-216ENST00000485943 SMIM6P0DI80 62 aa4.69□□□□□ -1.66
USP40-216ENST00000485943 CTAG1AP78358 180 aa4.69□□□□□ -1.66
USP40-216ENST00000485943 OCIAD2Q56VL3 154 aa4.69□□□□□ -1.66
USP40-216ENST00000485943 LINC00575Q6W349 94 aa4.69□□□□□ -1.66
USP40-216ENST00000485943 C2orf91Q6ZV80 131 aa4.69□□□□□ -1.66
USP40-216ENST00000485943 RETNLBQ9BQ08 111 aa4.69□□□□□ -1.66
USP40-216ENST00000485943 FXYD2P54710 66 aa4.68□□□□□ -1.66
USP40-216ENST00000485943 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.68□□□□□ -1.66
USP40-216ENST00000485943 FABP2P12104 132 aa4.67□□□□□ -1.66
USP40-216ENST00000485943 IGLV7-46A0A075B6I9 117 aa4.66□□□□□ -1.66
USP40-216ENST00000485943 PPDPFLQ8WWR9 84 aa4.66□□□□□ -1.66
USP40-216ENST00000485943 H3BQ85 93 aa4.65□□□□□ -1.67
USP40-216ENST00000485943 TCL1BO95988 128 aa4.65□□□□□ -1.67
USP40-216ENST00000485943 SPRR1BP22528 89 aa4.65□□□□□ -1.67
USP40-216ENST00000485943 BATFQ16520 125 aa4.65□□□□□ -1.67
USP40-216ENST00000485943 LYRM7Q5U5X0 104 aa4.65□□□□□ -1.67
USP40-216ENST00000485943 Q6JHZ5 121 aa4.65□□□□□ -1.67
USP40-216ENST00000485943 IGLV5-48A0A075B6I7 105 aa4.64□□□□□ -1.67
USP40-216ENST00000485943 A0A1B0GX51 115 aa4.64□□□□□ -1.67
USP40-216ENST00000485943 K7ERJ3 54 aa4.64□□□□□ -1.67
USP40-216ENST00000485943 RPS29P62273 56 aaKnown RBP4.64□□□□□ -1.67
USP40-216ENST00000485943 FP248Q71RG6 208 aaPredicted RBP4.64□□□□□ -1.67
USP40-216ENST00000485943 ORMDL1Q9P0S3 153 aa4.64□□□□□ -1.67
USP40-216ENST00000485943 Q8N377 158 aa4.63□□□□□ -1.67
USP40-216ENST00000485943 CD164Q04900 197 aa4.62□□□□□ -1.67
USP40-216ENST00000485943 CLEC2BQ92478 149 aa4.62□□□□□ -1.67
USP40-216ENST00000485943 TNXBP22105 4242 aa4.61□□□□□ -1.67
USP40-216ENST00000485943 A0A1B0GV72 72 aa4.6□□□□□ -1.67
USP40-216ENST00000485943 TMEM256-PLSCR3K7ERE1 68 aa4.6□□□□□ -1.67
USP40-216ENST00000485943 NDUFV3P56181 108 aaKnown RBP4.6□□□□□ -1.67
USP40-216ENST00000485943 SS18L2Q9UHA2 77 aa4.6□□□□□ -1.67
USP40-216ENST00000485943 H3BMG7 143 aa4.59□□□□□ -1.67
USP40-216ENST00000485943 SEC61BP60468 96 aaKnown RBP4.59□□□□□ -1.67
USP40-216ENST00000485943 H3BUT2 72 aa4.58□□□□□ -1.68
USP40-216ENST00000485943 LINC01547P58512 204 aaPredicted RBP4.58□□□□□ -1.68
USP40-216ENST00000485943 ATXN8Q156A1 80 aa4.58□□□□□ -1.68
USP40-216ENST00000485943 ANKRD29Q8N6D5 301 aa4.58□□□□□ -1.68
USP40-216ENST00000485943 VPS25Q9BRG1 176 aa4.58□□□□□ -1.68
USP40-216ENST00000485943 A0A0U1RQV1 116 aa4.57□□□□□ -1.68
USP40-216ENST00000485943 TPRXLQ17RH7 258 aa4.57□□□□□ -1.68
USP40-216ENST00000485943 IGFL1Q6UW32 110 aa4.57□□□□□ -1.68
USP40-216ENST00000485943 SMIM29Q86T20 159 aa4.57□□□□□ -1.68
USP40-216ENST00000485943 FAM218AQ96MZ4 157 aa4.57□□□□□ -1.68
USP40-216ENST00000485943 LST1O00453 97 aa4.56□□□□□ -1.68
USP40-216ENST00000485943 TRACP01848 142 aa4.56□□□□□ -1.68
USP40-216ENST00000485943 DSCR8Q96T75 97 aa4.56□□□□□ -1.68
USP40-216ENST00000485943 A0A0G2JQZ4 141 aa4.55□□□□□ -1.68
USP40-216ENST00000485943 TRBV7-7A0A0K0K1E9 115 aa4.55□□□□□ -1.68
USP40-216ENST00000485943 Q75L30 129 aa4.55□□□□□ -1.68
USP40-216ENST00000485943 TEN1Q86WV5 123 aa4.55□□□□□ -1.68
USP40-216ENST00000485943 LOC105371267A0A1B0GV96 52 aa4.54□□□□□ -1.68
USP40-216ENST00000485943 C9orf92A6NGG3 77 aa4.54□□□□□ -1.68
USP40-216ENST00000485943 UBE2V1Q13404 147 aa4.54□□□□□ -1.68
USP40-216ENST00000485943 NAA38Q9BRA0 125 aaKnown RBP4.54□□□□□ -1.68
USP40-216ENST00000485943 HMCN2Q8NDA2 5059 aa4.54□□□□□ -1.68
USP40-216ENST00000485943 IGLV8-61A0A075B6I0 122 aa4.53□□□□□ -1.68
USP40-216ENST00000485943 TRBV20-1A0A075B6N2 111 aa4.53□□□□□ -1.68
USP40-216ENST00000485943 BAALC-AS2P0C853 105 aa4.53□□□□□ -1.68
USP40-216ENST00000485943 RBM3P98179 157 aaKnown RBP4.53□□□□□ -1.68
USP40-216ENST00000485943 A0A087WSZ3 146 aa4.52□□□□□ -1.69
USP40-216ENST00000485943 CCKP06307 115 aa4.52□□□□□ -1.69
USP40-216ENST00000485943 C9JAW5 83 aa4.51□□□□□ -1.69
USP40-216ENST00000485943 Q5XG85 94 aa4.51□□□□□ -1.69
USP40-216ENST00000485943 SIGMAR1Q99720 223 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms