RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 MAP1AP78559 2803 aaPredicted RBP3.15□□□□□ -1.91
USP40-213ENST00000483216 LCE6AA0A183 80 aa3.15□□□□□ -1.91
USP40-213ENST00000483216 ZNF73O43830 326 aaPredicted RBP3.15□□□□□ -1.91
USP40-213ENST00000483216 ASB16-AS1Q495Z4 193 aa3.15□□□□□ -1.91
USP40-213ENST00000483216 BRD3OSQ6XYD6 125 aa3.15□□□□□ -1.91
USP40-213ENST00000483216 Q6ZQY7 126 aa3.15□□□□□ -1.91
USP40-213ENST00000483216 DEFB104AQ8WTQ1 72 aa3.15□□□□□ -1.91
USP40-213ENST00000483216 TM2D3Q9BRN9 247 aa3.15□□□□□ -1.91
USP40-213ENST00000483216 ABCA12Q86UK0 2595 aa3.14□□□□□ -1.91
USP40-213ENST00000483216 MYO9AB2RTY4 2548 aa3.14□□□□□ -1.91
USP40-213ENST00000483216 TRAV10A0A0B4J240 114 aa3.14□□□□□ -1.91
USP40-213ENST00000483216 M0R378 163 aa3.14□□□□□ -1.91
USP40-213ENST00000483216 DEFB113Q30KQ7 82 aa3.14□□□□□ -1.91
USP40-213ENST00000483216 PHF5AQ7RTV0 110 aaKnown RBP3.14□□□□□ -1.91
USP40-213ENST00000483216 WFDC9Q8NEX5 89 aa3.14□□□□□ -1.91
USP40-213ENST00000483216 Q9BRP9 147 aa3.14□□□□□ -1.91
USP40-213ENST00000483216 PRO0255Q9UI72 69 aa3.14□□□□□ -1.91
USP40-213ENST00000483216 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.13□□□□□ -1.914e-11■■■■■ 41.7
USP40-213ENST00000483216 MUC4Q99102 2169 aa3.13□□□□□ -1.91
USP40-213ENST00000483216 SPG11Q96JI7 2443 aa3.13□□□□□ -1.91
USP40-213ENST00000483216 DEFB1P60022 68 aa3.12□□□□□ -1.91
USP40-213ENST00000483216 KRTAP13-2Q52LG2 175 aa3.12□□□□□ -1.91
USP40-213ENST00000483216 Q6ZTI0 123 aa3.12□□□□□ -1.91
USP40-213ENST00000483216 B9D2Q9BPU9 175 aa3.12□□□□□ -1.91
USP40-213ENST00000483216 HIGD2AQ9BW72 106 aa3.12□□□□□ -1.91
USP40-213ENST00000483216 LINC00474Q9P2X8 69 aa3.12□□□□□ -1.91
USP40-213ENST00000483216 CELSR1Q9NYQ6 3014 aa3.11□□□□□ -1.91
USP40-213ENST00000483216 NIPBLQ6KC79 2804 aaeCLIP3.11□□□□□ -1.91
USP40-213ENST00000483216 ANKRD17O75179 2603 aaKnown RBP3.11□□□□□ -1.91
USP40-213ENST00000483216 HIVEP1P15822 2718 aa3.11□□□□□ -1.91
USP40-213ENST00000483216 CSMD2Q7Z408 3487 aa3.11□□□□□ -1.91
USP40-213ENST00000483216 IGLV5-48A0A075B6I7 105 aa3.11□□□□□ -1.91
USP40-213ENST00000483216 A0A096LNT2 108 aa3.11□□□□□ -1.91
USP40-213ENST00000483216 TRAV22A0A0B4J277 110 aa3.11□□□□□ -1.91
USP40-213ENST00000483216 IGKV3OR2-268A0A0C4DH90 116 aa3.11□□□□□ -1.91
USP40-213ENST00000483216 IGKV4-1P06312 121 aa3.11□□□□□ -1.91
USP40-213ENST00000483216 SPAG11BQ08648 103 aa3.11□□□□□ -1.91
USP40-213ENST00000483216 SYCNQ0VAF6 134 aa3.11□□□□□ -1.91
USP40-213ENST00000483216 DEFB112Q30KQ8 113 aa3.11□□□□□ -1.91
USP40-213ENST00000483216 LINC00269Q8N2A0 174 aa3.11□□□□□ -1.91
USP40-213ENST00000483216 C1orf64Q8NEQ6 169 aa3.11□□□□□ -1.91
USP40-213ENST00000483216 RETNQ9HD89 108 aa3.11□□□□□ -1.91
USP40-213ENST00000483216 NOP10Q9NPE3 64 aaKnown RBP3.11□□□□□ -1.91
USP40-213ENST00000483216 ITPR3Q14573 2671 aa3.11□□□□□ -1.91
USP40-213ENST00000483216 CCDC168Q8NDH2 2452 aa3.11□□□□□ -1.91
USP40-213ENST00000483216 POLQO75417 2590 aa3.1□□□□□ -1.91
USP40-213ENST00000483216 CSPG4Q6UVK1 2322 aa3.1□□□□□ -1.91
USP40-213ENST00000483216 CHKB-CPT1BH3BT56 60 aa3.1□□□□□ -1.91
USP40-213ENST00000483216 PSCAO43653 123 aa3.1□□□□□ -1.91
USP40-213ENST00000483216 KPRPQ5T749 579 aaPredicted RBP3.1□□□□□ -1.91
USP40-213ENST00000483216 LINC00208Q96KT6 92 aa3.1□□□□□ -1.91
USP40-213ENST00000483216 CSMD1Q96PZ7 3565 aa3.1□□□□□ -1.91
USP40-213ENST00000483216 AKAP9Q99996 3911 aa3.1□□□□□ -1.91
USP40-213ENST00000483216 CR1P17927 2039 aa3.09□□□□□ -1.91
USP40-213ENST00000483216 ANGP03950 147 aaKnown RBP3.09□□□□□ -1.91
USP40-213ENST00000483216 KRTAP21-3Q3LHN1 58 aa3.09□□□□□ -1.91
USP40-213ENST00000483216 C7orf65Q6ZTY9 151 aa3.09□□□□□ -1.91
USP40-213ENST00000483216 PRR15LQ9BU68 103 aa3.09□□□□□ -1.91
USP40-213ENST00000483216 KCNQ1DNQ9H478 68 aa3.09□□□□□ -1.91
USP40-213ENST00000483216 TP53AIP1Q9HCN2 124 aa3.09□□□□□ -1.91
USP40-213ENST00000483216 CDC42SE1Q9NRR8 79 aa3.09□□□□□ -1.91
USP40-213ENST00000483216 IGLV1-50A0A075B6I6 118 aa3.08□□□□□ -1.92
USP40-213ENST00000483216 LOC101927531A0A1B0GV80 90 aa3.08□□□□□ -1.92
USP40-213ENST00000483216 A6NED7 52 aa3.08□□□□□ -1.92
USP40-213ENST00000483216 LCA10Q71F78 164 aa3.08□□□□□ -1.92
USP40-213ENST00000483216 ZCCHC13Q8WW36 166 aaKnown RBP3.08□□□□□ -1.92
USP40-213ENST00000483216 SPRR4Q96PI1 79 aa3.08□□□□□ -1.92
USP40-213ENST00000483216 WFDC10AQ9H1F0 79 aa3.08□□□□□ -1.92
USP40-213ENST00000483216 VPS13CQ709C8 3753 aa3.07□□□□□ -1.92
USP40-213ENST00000483216 F8P00451 2351 aa3.07□□□□□ -1.92
USP40-213ENST00000483216 LELP1Q5T871 98 aa3.07□□□□□ -1.92
USP40-213ENST00000483216 C10orf99Q6UWK7 81 aa3.07□□□□□ -1.92
USP40-213ENST00000483216 CASC2Q6XLA1 102 aa3.07□□□□□ -1.92
USP40-213ENST00000483216 LINC00588Q9Y4M8 146 aa3.07□□□□□ -1.92
USP40-213ENST00000483216 PSPHP1O15172 72 aa3.06□□□□□ -1.92
USP40-213ENST00000483216 PRM2P04554 102 aa3.06□□□□□ -1.92
USP40-213ENST00000483216 C1orf137Q5JT78 98 aa3.06□□□□□ -1.92
USP40-213ENST00000483216 CAMK2N2Q96S95 79 aa3.06□□□□□ -1.92
USP40-213ENST00000483216 SETD2Q9BYW2 2564 aaPredicted RBP3.06□□□□□ -1.92
USP40-213ENST00000483216 NF1P21359 2839 aa3.05□□□□□ -1.92
USP40-213ENST00000483216 TEP1Q99973 2627 aaKnown RBP3.05□□□□□ -1.92
USP40-213ENST00000483216 H3BNG1 76 aa3.05□□□□□ -1.92
USP40-213ENST00000483216 SPTSSBQ8NFR3 76 aa3.05□□□□□ -1.92
USP40-213ENST00000483216 SMR3AQ99954 134 aa3.05□□□□□ -1.92
USP40-213ENST00000483216 RBM12B-AS1Q9P1G2 102 aa3.05□□□□□ -1.92
USP40-213ENST00000483216 ZFHX3Q15911 3703 aa3.05□□□□□ -1.92
USP40-213ENST00000483216 ACANP16112 2415 aa3.04□□□□□ -1.92
USP40-213ENST00000483216 ZANQ9Y493 2812 aa3.04□□□□□ -1.92
USP40-213ENST00000483216 FAM229BQ4G0N7 80 aa3.04□□□□□ -1.92
USP40-213ENST00000483216 C9orf116Q5BN46 136 aaPredicted RBP3.04□□□□□ -1.92
USP40-213ENST00000483216 MTORP42345 2549 aa3.04□□□□□ -1.92
USP40-213ENST00000483216 ZNF469Q96JG9 3925 aaPredicted RBP3.04□□□□□ -1.92
USP40-213ENST00000483216 ANK3Q12955 4377 aaKnown RBP3.04□□□□□ -1.92
USP40-213ENST00000483216 FLNAP21333 2647 aaKnown RBP3.04□□□□□ -1.92
USP40-213ENST00000483216 HIVEP2P31629 2446 aa3.03□□□□□ -1.92
USP40-213ENST00000483216 A8MUN3 132 aa3.03□□□□□ -1.92
USP40-213ENST00000483216 PRR3P79522 188 aaKnown RBP3.03□□□□□ -1.92
USP40-213ENST00000483216 DEFB136Q30KP8 78 aa3.03□□□□□ -1.92
USP40-213ENST00000483216 Q5VV11 94 aa3.03□□□□□ -1.92
USP40-213ENST00000483216 SCXQ7RTU7 201 aa3.03□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 85.3 ms