RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 STAB1Q9NY15 2570 aa9.22□□□□□ -0.93
HDAC6-220ENST00000477528 MRPL34Q9BQ48 92 aaKnown RBP9.21□□□□□ -0.93
HDAC6-220ENST00000477528 OCR1Q9BZK8 76 aa9.21□□□□□ -0.94
HDAC6-220ENST00000477528 PRO0628Q9UI54 55 aa9.21□□□□□ -0.94
HDAC6-220ENST00000477528 C1orf195Q5TG92 126 aa9.2□□□□□ -0.94
HDAC6-220ENST00000477528 C8orf17Q9NRJ1 99 aa9.2□□□□□ -0.94
HDAC6-220ENST00000477528 LAMA5O15230 3695 aa9.2□□□□□ -0.94
HDAC6-220ENST00000477528 LINC00313P59037 77 aa9.2□□□□□ -0.94
HDAC6-220ENST00000477528 SVIPQ8NHG7 77 aa9.2□□□□□ -0.94
HDAC6-220ENST00000477528 DSCR10P59022 87 aa9.19□□□□□ -0.94
HDAC6-220ENST00000477528 RELNP78509 3460 aa9.19□□□□□ -0.94
HDAC6-220ENST00000477528 C8orf87E5RJ46 101 aa9.18□□□□□ -0.94
HDAC6-220ENST00000477528 SSBP3-AS1Q7Z2R9 100 aa9.18□□□□□ -0.94
HDAC6-220ENST00000477528 A0A1B0GVX0 72 aa9.18□□□□□ -0.94
HDAC6-220ENST00000477528 ZFHX4Q86UP3 3567 aa9.17□□□□□ -0.94
HDAC6-220ENST00000477528 LOC101927531A0A1B0GV80 90 aa9.16□□□□□ -0.94
HDAC6-220ENST00000477528 IGLV7-43P04211 117 aa9.16□□□□□ -0.94
HDAC6-220ENST00000477528 KRTAP1-5Q9BYS1 174 aa9.16□□□□□ -0.94
HDAC6-220ENST00000477528 DCHS2Q6V1P9 2916 aa9.16□□□□□ -0.94
HDAC6-220ENST00000477528 ASPMQ8IZT6 3477 aa9.16□□□□□ -0.94
HDAC6-220ENST00000477528 TYMSOSQ8TAI1 123 aa9.15□□□□□ -0.94
HDAC6-220ENST00000477528 IGKV2D-30A0A075B6S6 120 aa9.15□□□□□ -0.94
HDAC6-220ENST00000477528 IGKV2-30P06310 120 aa9.15□□□□□ -0.94
HDAC6-220ENST00000477528 ANAPC11Q9NYG5 84 aa9.15□□□□□ -0.94
HDAC6-220ENST00000477528 NSD1Q96L73 2696 aaPredicted RBP9.13□□□□□ -0.95
HDAC6-220ENST00000477528 ACYP2P14621 99 aa9.13□□□□□ -0.95
HDAC6-220ENST00000477528 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.13□□□□□ -0.95
HDAC6-220ENST00000477528 CRYBG3Q68DQ2 2970 aa9.13□□□□□ -0.95
HDAC6-220ENST00000477528 HIVEP1P15822 2718 aa9.12□□□□□ -0.95
HDAC6-220ENST00000477528 PMAIP1Q13794 54 aa9.11□□□□□ -0.95
HDAC6-220ENST00000477528 FAM229AH3BQW9 127 aa9.11□□□□□ -0.95
HDAC6-220ENST00000477528 CELSR2Q9HCU4 2923 aa9.1□□□□□ -0.95
HDAC6-220ENST00000477528 CYSTM1Q9H1C7 97 aa9.1□□□□□ -0.95
HDAC6-220ENST00000477528 IGLV8-61A0A075B6I0 122 aa9.09□□□□□ -0.95
HDAC6-220ENST00000477528 PLA2G1BP04054 148 aaKnown RBP9.09□□□□□ -0.95
HDAC6-220ENST00000477528 SPRR1BP22528 89 aa9.08□□□□□ -0.96
HDAC6-220ENST00000477528 KRTAP4-16G5E9R7 235 aaPredicted RBP9.08□□□□□ -0.96
HDAC6-220ENST00000477528 SPAG11AQ6PDA7 123 aa9.07□□□□□ -0.96
HDAC6-220ENST00000477528 DCHS1Q96JQ0 3298 aa9.07□□□□□ -0.96
HDAC6-220ENST00000477528 COA5Q86WW8 74 aa9.07□□□□□ -0.96
HDAC6-220ENST00000477528 NF1P21359 2839 aa9.07□□□□□ -0.96
HDAC6-220ENST00000477528 TNP2Q05952 138 aa9.06□□□□□ -0.96
HDAC6-220ENST00000477528 FBN2P35556 2912 aa9.06□□□□□ -0.96
HDAC6-220ENST00000477528 MXRA5Q9NR99 2828 aa9.05□□□□□ -0.96
HDAC6-220ENST00000477528 SPINK1P00995 79 aa9.05□□□□□ -0.96
HDAC6-220ENST00000477528 C7orf65Q6ZTY9 151 aa9.05□□□□□ -0.96
HDAC6-220ENST00000477528 KMT2BQ9UMN6 2715 aaPredicted RBP9.04□□□□□ -0.96
HDAC6-220ENST00000477528 SPANXA2-OT1Q8N9U9 137 aa9.04□□□□□ -0.96
HDAC6-220ENST00000477528 ASH1LQ9NR48 2969 aaKnown RBP9.04□□□□□ -0.96
HDAC6-220ENST00000477528 NIPBLQ6KC79 2804 aaeCLIP9.04□□□□□ -0.96
HDAC6-220ENST00000477528 PLAC8Q9NZF1 115 aa9.02□□□□□ -0.97
HDAC6-220ENST00000477528 K7ERS5 55 aa9.02□□□□□ -0.97
HDAC6-220ENST00000477528 Q96NJ1 140 aa9.01□□□□□ -0.97
HDAC6-220ENST00000477528 A8MUN3 132 aa9□□□□□ -0.97
HDAC6-220ENST00000477528 A0A1B0GU69 56 aa8.99□□□□□ -0.97
HDAC6-220ENST00000477528 CD164Q04900 197 aa8.98□□□□□ -0.97
HDAC6-220ENST00000477528 BAHCC1Q9P281 2608 aa8.98□□□□□ -0.97
HDAC6-220ENST00000477528 SMG1Q96Q15 3661 aaKnown RBP8.98□□□□□ -0.97
HDAC6-220ENST00000477528 LINC00336Q6ZUF6 198 aa8.97□□□□□ -0.97
HDAC6-220ENST00000477528 LINC00472Q9H8W2 130 aa8.97□□□□□ -0.97
HDAC6-220ENST00000477528 CYP4F30PQ9H0H9 118 aa8.96□□□□□ -0.98
HDAC6-220ENST00000477528 LINC00304Q8N9R0 145 aa8.95□□□□□ -0.98
HDAC6-220ENST00000477528 MMP24-AS1A0A0U1RRL7 71 aa8.95□□□□□ -0.98
HDAC6-220ENST00000477528 NBEAL1Q6ZS30 2694 aa8.93□□□□□ -0.98
HDAC6-220ENST00000477528 KRTAP7-1Q8IUC3 87 aa8.91□□□□□ -0.98
HDAC6-220ENST00000477528 PANO1I0J062 215 aa8.88□□□□□ -0.99
HDAC6-220ENST00000477528 SMR3BP02814 79 aaPredicted RBP8.87□□□□□ -0.99
HDAC6-220ENST00000477528 FAM229BQ4G0N7 80 aa8.87□□□□□ -0.99
HDAC6-220ENST00000477528 Q5XG85 94 aa8.87□□□□□ -0.99
HDAC6-220ENST00000477528 IGLV7-46A0A075B6I9 117 aa8.86□□□□□ -0.99
HDAC6-220ENST00000477528 Q1T7F1 81 aa8.86□□□□□ -0.99
HDAC6-220ENST00000477528 LINC00483Q53H64 154 aa8.84□□□□□ -0.99
HDAC6-220ENST00000477528 FP248Q71RG6 208 aaPredicted RBP8.82□□□□□ -1
HDAC6-220ENST00000477528 OXTP01178 125 aa8.82□□□□□ -1
HDAC6-220ENST00000477528 Q6ZR54 194 aa8.82□□□□□ -1
HDAC6-220ENST00000477528 CSMD1Q96PZ7 3565 aa8.82□□□□□ -1
HDAC6-220ENST00000477528 Q6ZRN7 208 aaPredicted RBP8.8□□□□□ -1
HDAC6-220ENST00000477528 KRTAP11-1Q8IUC1 163 aa8.8□□□□□ -1
HDAC6-220ENST00000477528 KRTAP29-1A8MX34 341 aaPredicted RBP8.77□□□□□ -1.01
HDAC6-220ENST00000477528 ATP11AUNQ6ZP68 121 aa8.77□□□□□ -1.01
HDAC6-220ENST00000477528 C9orf92A6NGG3 77 aa8.77□□□□□ -1.01
HDAC6-220ENST00000477528 BSNQ9UPA5 3926 aa8.75□□□□□ -1.01
HDAC6-220ENST00000477528 PDZD2O15018 2839 aa8.75□□□□□ -1.01
HDAC6-220ENST00000477528 CELSR1Q9NYQ6 3014 aa8.74□□□□□ -1.01
HDAC6-220ENST00000477528 STAB2Q8WWQ8 2551 aa8.73□□□□□ -1.01
HDAC6-220ENST00000477528 UQCR11O14957 56 aa8.73□□□□□ -1.01
HDAC6-220ENST00000477528 KRTAP10-2P60368 255 aa8.73□□□□□ -1.01
HDAC6-220ENST00000477528 PRR26Q8N8Z3 221 aa8.72□□□□□ -1.01
HDAC6-220ENST00000477528 ZCCHC13Q8WW36 166 aaKnown RBP8.71□□□□□ -1.01
HDAC6-220ENST00000477528 TENM4Q6N022 2769 aa8.71□□□□□ -1.02
HDAC6-220ENST00000477528 HRES1P13985 223 aa8.71□□□□□ -1.02
HDAC6-220ENST00000477528 KRTAP10-1P60331 282 aa8.7□□□□□ -1.02
HDAC6-220ENST00000477528 SPENQ96T58 3664 aaKnown RBP8.69□□□□□ -1.02
HDAC6-220ENST00000477528 Q8N9P0 234 aaPredicted RBP8.69□□□□□ -1.02
HDAC6-220ENST00000477528 KRTAP13-1Q8IUC0 172 aa8.68□□□□□ -1.02
HDAC6-220ENST00000477528 SVEP1Q4LDE5 3571 aa8.67□□□□□ -1.02
HDAC6-220ENST00000477528 LCE6AA0A183 80 aa8.66□□□□□ -1.02
HDAC6-220ENST00000477528 CDC42SE1Q9NRR8 79 aa8.65□□□□□ -1.02
HDAC6-220ENST00000477528 MIR22HGQ0VDD5 57 aa8.64□□□□□ -1.03
HDAC6-220ENST00000477528 Q5W150 140 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 120.9 ms