RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 IGLV5-52A0A0A0MRZ9 124 aa7.56□□□□□ -1.2
SYNE1-222ENST00000474655 ALMS1Q8TCU4 4167 aa7.55□□□□□ -1.2
SYNE1-222ENST00000474655 A0A1W2PNM2 257 aa7.55□□□□□ -1.2
SYNE1-222ENST00000474655 FUSP35637 526 aaKnown RBP eCLIP7.55□□□□□ -1.2
SYNE1-222ENST00000474655 SPRR4Q96PI1 79 aa7.55□□□□□ -1.2
SYNE1-222ENST00000474655 Q8NBF4 154 aa7.54□□□□□ -1.2
SYNE1-222ENST00000474655 UBE2AP49459 152 aa7.54□□□□□ -1.2
SYNE1-222ENST00000474655 A0A087WVE0 104 aa7.53□□□□□ -1.2
SYNE1-222ENST00000474655 HAMPP81172 84 aa7.53□□□□□ -1.2
SYNE1-222ENST00000474655 F8WEM9 126 aa7.52□□□□□ -1.21
SYNE1-222ENST00000474655 SRRM2Q9UQ35 2752 aaKnown RBP7.52□□□□□ -1.21
SYNE1-222ENST00000474655 FRAS1Q86XX4 4008 aa7.51□□□□□ -1.21
SYNE1-222ENST00000474655 ATOX1O00244 68 aa7.51□□□□□ -1.21
SYNE1-222ENST00000474655 CRYGAP11844 174 aa7.5□□□□□ -1.21
SYNE1-222ENST00000474655 NREPQ16612 68 aa7.5□□□□□ -1.21
SYNE1-222ENST00000474655 IGFL1Q6UW32 110 aa7.49□□□□□ -1.21
SYNE1-222ENST00000474655 PSORS1C2Q9UIG4 136 aa7.48□□□□□ -1.21
SYNE1-222ENST00000474655 KRTAP10-2P60368 255 aa7.47□□□□□ -1.21
SYNE1-222ENST00000474655 CCDC179H3BU77 68 aa7.46□□□□□ -1.22
SYNE1-222ENST00000474655 LINC00483Q53H64 154 aa7.45□□□□□ -1.22
SYNE1-222ENST00000474655 DNAH8Q96JB1 4490 aa7.44□□□□□ -1.22
SYNE1-222ENST00000474655 Q6ZSA8 131 aa7.44□□□□□ -1.22
SYNE1-222ENST00000474655 DNAH11Q96DT5 4516 aa7.44□□□□□ -1.22
SYNE1-222ENST00000474655 ZNF861PO60384 105 aa7.43□□□□□ -1.22
SYNE1-222ENST00000474655 SCXQ7RTU7 201 aa7.43□□□□□ -1.22
SYNE1-222ENST00000474655 BPY2O14599 106 aa7.43□□□□□ -1.22
SYNE1-222ENST00000474655 UQCRQO14949 82 aa7.43□□□□□ -1.22
SYNE1-222ENST00000474655 COX7CP15954 63 aa7.43□□□□□ -1.22
SYNE1-222ENST00000474655 PKD1P98161 4303 aa7.43□□□□□ -1.22
SYNE1-222ENST00000474655 A0A0G2JQZ4 141 aa7.42□□□□□ -1.22
SYNE1-222ENST00000474655 SERP2Q8N6R1 65 aa7.42□□□□□ -1.22
SYNE1-222ENST00000474655 FAM30AQ9NZY2 134 aa7.42□□□□□ -1.22
SYNE1-222ENST00000474655 ZNF706Q9Y5V0 76 aaPredicted RBP7.42□□□□□ -1.22
SYNE1-222ENST00000474655 DNAH5Q8TE73 4624 aa7.42□□□□□ -1.22
SYNE1-222ENST00000474655 IGKV4-1P06312 121 aa7.41□□□□□ -1.22
SYNE1-222ENST00000474655 RPL37AP61513 92 aaKnown RBP7.41□□□□□ -1.22
SYNE1-222ENST00000474655 CIRBP-AS1Q8TBR5 109 aa7.41□□□□□ -1.22
SYNE1-222ENST00000474655 HYDINQ4G0P3 5121 aa7.41□□□□□ -1.22
SYNE1-222ENST00000474655 FAT2Q9NYQ8 4349 aa7.4□□□□□ -1.22
SYNE1-222ENST00000474655 IGLV7-43P04211 117 aa7.38□□□□□ -1.23
SYNE1-222ENST00000474655 KRTAP10-1P60331 282 aa7.38□□□□□ -1.23
SYNE1-222ENST00000474655 A0A087WSZ3 146 aa7.37□□□□□ -1.23
SYNE1-222ENST00000474655 DSCR10P59022 87 aa7.37□□□□□ -1.23
SYNE1-222ENST00000474655 Q8N9L7 120 aa7.37□□□□□ -1.23
SYNE1-222ENST00000474655 SMIM20Q8N5G0 67 aa7.36□□□□□ -1.23
SYNE1-222ENST00000474655 TRAV7A0A075B6U4 112 aa7.34□□□□□ -1.23
SYNE1-222ENST00000474655 C9orf153Q5TBE3 101 aa7.34□□□□□ -1.23
SYNE1-222ENST00000474655 LCE6AA0A183 80 aa7.33□□□□□ -1.24
SYNE1-222ENST00000474655 IGLV9-49A0A0B4J1Y8 123 aa7.33□□□□□ -1.24
SYNE1-222ENST00000474655 LINC00472Q9H8W2 130 aa7.32□□□□□ -1.24
SYNE1-222ENST00000474655 LINC00336Q6ZUF6 198 aa7.31□□□□□ -1.24
SYNE1-222ENST00000474655 K7EQZ3 153 aa7.31□□□□□ -1.24
SYNE1-222ENST00000474655 SACSQ9NZJ4 4579 aa7.3□□□□□ -1.24
SYNE1-222ENST00000474655 MOBPQ13875 183 aa7.28□□□□□ -1.24
SYNE1-222ENST00000474655 ANAPC11Q9NYG5 84 aa7.28□□□□□ -1.24
SYNE1-222ENST00000474655 OCR1Q9BZK8 76 aa7.28□□□□□ -1.24
SYNE1-222ENST00000474655 DEFB116Q30KQ4 102 aa7.27□□□□□ -1.25
SYNE1-222ENST00000474655 LOC100996750A0A140TA64 210 aa7.26□□□□□ -1.25
SYNE1-222ENST00000474655 KRTAP4-6Q9BYQ5 205 aa7.26□□□□□ -1.25
SYNE1-222ENST00000474655 J3KT08 172 aa7.25□□□□□ -1.25
SYNE1-222ENST00000474655 CYSTM1Q9H1C7 97 aa7.25□□□□□ -1.25
SYNE1-222ENST00000474655 LRP1BQ9NZR2 4599 aa7.25□□□□□ -1.25
SYNE1-222ENST00000474655 Q96NJ1 140 aa7.25□□□□□ -1.25
SYNE1-222ENST00000474655 SS18L2Q9UHA2 77 aa7.25□□□□□ -1.25
SYNE1-222ENST00000474655 A8MWP4 228 aa7.24□□□□□ -1.25
SYNE1-222ENST00000474655 HCG22E2RYF7 251 aa7.24□□□□□ -1.25
SYNE1-222ENST00000474655 A0A1B0GVY2 172 aa7.23□□□□□ -1.25
SYNE1-222ENST00000474655 KLKP1Q107X0 134 aa7.23□□□□□ -1.25
SYNE1-222ENST00000474655 SSBP3-AS1Q7Z2R9 100 aa7.23□□□□□ -1.25
SYNE1-222ENST00000474655 PRR15Q8IV56 129 aa7.23□□□□□ -1.25
SYNE1-222ENST00000474655 CD164Q04900 197 aa7.23□□□□□ -1.25
SYNE1-222ENST00000474655 C20orf197Q8N268 126 aa7.23□□□□□ -1.25
SYNE1-222ENST00000474655 FAM229BQ4G0N7 80 aa7.21□□□□□ -1.25
SYNE1-222ENST00000474655 KRTAP29-1A8MX34 341 aaPredicted RBP7.2□□□□□ -1.26
SYNE1-222ENST00000474655 PKHD1P08F94 4074 aa7.2□□□□□ -1.26
SYNE1-222ENST00000474655 HRCT1Q6UXD1 115 aa7.2□□□□□ -1.26
SYNE1-222ENST00000474655 VPS13BQ7Z7G8 4022 aa7.19□□□□□ -1.26
SYNE1-222ENST00000474655 KRTAP1-4P0C5Y4 121 aa7.18□□□□□ -1.26
SYNE1-222ENST00000474655 A0A087X002 238 aa7.18□□□□□ -1.26
SYNE1-222ENST00000474655 TMEM258P61165 79 aa7.18□□□□□ -1.26
SYNE1-222ENST00000474655 NDUFB1O75438 58 aa7.17□□□□□ -1.26
SYNE1-222ENST00000474655 KRTAP13-2Q52LG2 175 aa7.17□□□□□ -1.26
SYNE1-222ENST00000474655 TMEM254Q8TBM7 123 aa7.17□□□□□ -1.26
SYNE1-222ENST00000474655 H7BZZ5 65 aa7.15□□□□□ -1.26
SYNE1-222ENST00000474655 ASB16-AS1Q495Z4 193 aa7.15□□□□□ -1.26
SYNE1-222ENST00000474655 A0A0U1RQV1 116 aa7.15□□□□□ -1.27
SYNE1-222ENST00000474655 CASC2Q6XLA1 102 aa7.15□□□□□ -1.27
SYNE1-222ENST00000474655 WFDC13Q8IUB5 93 aa7.15□□□□□ -1.27
SYNE1-222ENST00000474655 MMP24-AS1A0A0U1RRL7 71 aa7.14□□□□□ -1.27
SYNE1-222ENST00000474655 LCE2BO14633 110 aa7.14□□□□□ -1.27
SYNE1-222ENST00000474655 NDUFC1O43677 76 aa7.14□□□□□ -1.27
SYNE1-222ENST00000474655 SNURFQ9Y675 71 aa7.14□□□□□ -1.27
SYNE1-222ENST00000474655 Q5XG85 94 aa7.13□□□□□ -1.27
SYNE1-222ENST00000474655 SPINK6Q6UWN8 80 aa7.13□□□□□ -1.27
SYNE1-222ENST00000474655 C5orf47Q569G3 176 aa7.12□□□□□ -1.27
SYNE1-222ENST00000474655 RYR2Q92736 4967 aa7.12□□□□□ -1.27
SYNE1-222ENST00000474655 A0A1B0GVX0 72 aa7.11□□□□□ -1.27
SYNE1-222ENST00000474655 DYNC1H1Q14204 4646 aaKnown RBP7.11□□□□□ -1.27
SYNE1-222ENST00000474655 hDV103S1A0JD37 113 aa7.1□□□□□ -1.27
SYNE1-222ENST00000474655 C8orf17Q9NRJ1 99 aa7.09□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms