RNA–Protein interactions for RNA: ENST00000473961.5

BRCA1-212, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 958 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-212ENST00000473961 CHD7Q9P2D1 2997 aa1.85□□□□□ -2.11
BRCA1-212ENST00000473961 TRANK1O15050 2925 aa1.84□□□□□ -2.11
BRCA1-212ENST00000473961 CUL9Q8IWT3 2517 aa1.84□□□□□ -2.11
BRCA1-212ENST00000473961 CHD9Q3L8U1 2897 aa1.84□□□□□ -2.11
BRCA1-212ENST00000473961 HTTP42858 3142 aa1.84□□□□□ -2.11
BRCA1-212ENST00000473961 J3QKU1 62 aa1.84□□□□□ -2.11
BRCA1-212ENST00000473961 DEFB136Q30KP8 78 aa1.84□□□□□ -2.11
BRCA1-212ENST00000473961 C5orf42Q9H799 3197 aa1.84□□□□□ -2.12
BRCA1-212ENST00000473961 TNRC18O15417 2968 aaPredicted RBP1.84□□□□□ -2.12
BRCA1-212ENST00000473961 PCNX1Q96RV3 2341 aa1.84□□□□□ -2.12
BRCA1-212ENST00000473961 XIRP2A4UGR9 3374 aa1.84□□□□□ -2.12
BRCA1-212ENST00000473961 APC2O95996 2303 aa1.83□□□□□ -2.12
BRCA1-212ENST00000473961 A0A096LPF7 62 aa1.83□□□□□ -2.12
BRCA1-212ENST00000473961 KRTAP13-1Q8IUC0 172 aa1.83□□□□□ -2.12
BRCA1-212ENST00000473961 WNK1Q9H4A3 2382 aa1.83□□□□□ -2.12
BRCA1-212ENST00000473961 MGAQ8IWI9 3026 aa1.83□□□□□ -2.12
BRCA1-212ENST00000473961 USP34Q70CQ2 3546 aa1.82□□□□□ -2.12
BRCA1-212ENST00000473961 SPACA4Q8TDM5 124 aa1.82□□□□□ -2.12
BRCA1-212ENST00000473961 DMAC1Q96GE9 116 aa1.82□□□□□ -2.12
BRCA1-212ENST00000473961 TPRP12270 2363 aaKnown RBP1.82□□□□□ -2.12
BRCA1-212ENST00000473961 FRYQ5TBA9 3013 aa1.82□□□□□ -2.12
BRCA1-212ENST00000473961 CNOT1A5YKK6 2376 aaKnown RBP1.81□□□□□ -2.12
BRCA1-212ENST00000473961 SPRR1BP22528 89 aa1.81□□□□□ -2.12
BRCA1-212ENST00000473961 KRTAP6-3Q3LI67 103 aa1.81□□□□□ -2.12
BRCA1-212ENST00000473961 KRTAP26-1Q6PEX3 210 aa1.81□□□□□ -2.12
BRCA1-212ENST00000473961 MRPL34Q9BQ48 92 aaKnown RBP1.81□□□□□ -2.12
BRCA1-212ENST00000473961 MAP1BP46821 2468 aaKnown RBP1.81□□□□□ -2.12
BRCA1-212ENST00000473961 VPS13AQ96RL7 3174 aa1.81□□□□□ -2.12
BRCA1-212ENST00000473961 COL6A6A6NMZ7 2263 aa1.8□□□□□ -2.12
BRCA1-212ENST00000473961 PTPRZ1P23471 2315 aaPredicted RBP1.8□□□□□ -2.12
BRCA1-212ENST00000473961 RP1L1Q8IWN7 2480 aaPredicted RBP1.8□□□□□ -2.12
BRCA1-212ENST00000473961 MKI67P46013 3256 aaKnown RBP1.8□□□□□ -2.12
BRCA1-212ENST00000473961 KRTAP13-4Q3LI77 160 aa1.8□□□□□ -2.12
BRCA1-212ENST00000473961 DEFB124Q8NES8 71 aa1.8□□□□□ -2.12
BRCA1-212ENST00000473961 CFAP54Q96N23 3096 aa1.8□□□□□ -2.12
BRCA1-212ENST00000473961 TRIOO75962 3097 aa1.8□□□□□ -2.12
BRCA1-212ENST00000473961 CFAP47Q6ZTR5 3102 aa1.8□□□□□ -2.12
BRCA1-212ENST00000473961 EP300Q09472 2414 aaPredicted RBP1.79□□□□□ -2.12
BRCA1-212ENST00000473961 FRYLO94915 3013 aa1.79□□□□□ -2.12
BRCA1-212ENST00000473961 KALRNO60229 2985 aa1.78□□□□□ -2.12
BRCA1-212ENST00000473961 H3BNG1 76 aa1.78□□□□□ -2.12
BRCA1-212ENST00000473961 SPART-AS1P0CW21 52 aa1.78□□□□□ -2.12
BRCA1-212ENST00000473961 BRCA2P51587 3418 aa1.78□□□□□ -2.12
BRCA1-212ENST00000473961 AKAP6Q13023 2319 aa1.77□□□□□ -2.13
BRCA1-212ENST00000473961 LAMA2P24043 3122 aaKnown RBP1.77□□□□□ -2.13
BRCA1-212ENST00000473961 NUPR2A6NF83 97 aa1.77□□□□□ -2.13
BRCA1-212ENST00000473961 KRTAP12-3P60328 96 aa1.77□□□□□ -2.13
BRCA1-212ENST00000473961 Q6ZRN7 208 aaPredicted RBP1.77□□□□□ -2.13
BRCA1-212ENST00000473961 Q96NJ1 140 aa1.77□□□□□ -2.13
BRCA1-212ENST00000473961 CCL19Q99731 98 aa1.77□□□□□ -2.13
BRCA1-212ENST00000473961 BAHCC1Q9P281 2608 aa1.77□□□□□ -2.13
BRCA1-212ENST00000473961 HIVEP2P31629 2446 aa1.77□□□□□ -2.13
BRCA1-212ENST00000473961 LAMA1P25391 3075 aa1.76□□□□□ -2.13
BRCA1-212ENST00000473961 CACNA1HO95180 2353 aa1.76□□□□□ -2.13
BRCA1-212ENST00000473961 DSPP15924 2871 aaKnown RBP1.76□□□□□ -2.13
BRCA1-212ENST00000473961 LY6G6CO95867 125 aa1.76□□□□□ -2.13
BRCA1-212ENST00000473961 KRTAP12-1P59990 96 aa1.76□□□□□ -2.13
BRCA1-212ENST00000473961 SPTBN5Q9NRC6 3674 aaKnown RBP1.76□□□□□ -2.13
BRCA1-212ENST00000473961 WDFY4Q6ZS81 3184 aa1.76□□□□□ -2.13
BRCA1-212ENST00000473961 DEFB113Q30KQ7 82 aa1.75□□□□□ -2.13
BRCA1-212ENST00000473961 LINC01556Q5JQF7 62 aa1.75□□□□□ -2.13
BRCA1-212ENST00000473961 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.75□□□□□ -2.135e-17■■■■■ 63.2
BRCA1-212ENST00000473961 VCANP13611 3396 aa1.75□□□□□ -2.13
BRCA1-212ENST00000473961 REV3LO60673 3130 aa1.75□□□□□ -2.13
BRCA1-212ENST00000473961 PIEZO2Q9H5I5 2752 aa1.75□□□□□ -2.13
BRCA1-212ENST00000473961 LAMA3Q16787 3333 aa1.74□□□□□ -2.13
BRCA1-212ENST00000473961 NCOR1O75376 2440 aa1.74□□□□□ -2.13
BRCA1-212ENST00000473961 HTN3P15516 51 aa1.74□□□□□ -2.13
BRCA1-212ENST00000473961 PRLHP81277 87 aa1.74□□□□□ -2.13
BRCA1-212ENST00000473961 FREM2Q5SZK8 3169 aa1.74□□□□□ -2.13
BRCA1-212ENST00000473961 PRUNE2Q8WUY3 3088 aa1.74□□□□□ -2.13
BRCA1-212ENST00000473961 ANKHD1Q8IWZ3 2542 aaKnown RBP1.74□□□□□ -2.13
BRCA1-212ENST00000473961 ABCA2Q9BZC7 2435 aa1.74□□□□□ -2.13
BRCA1-212ENST00000473961 C2CD3Q4AC94 2353 aa1.73□□□□□ -2.13
BRCA1-212ENST00000473961 AKAP13Q12802 2813 aa1.73□□□□□ -2.13
BRCA1-212ENST00000473961 WDFY3Q8IZQ1 3526 aa1.73□□□□□ -2.13
BRCA1-212ENST00000473961 K7EIL1 84 aa1.73□□□□□ -2.13
BRCA1-212ENST00000473961 CEP290O15078 2479 aa1.73□□□□□ -2.13
BRCA1-212ENST00000473961 DCHS1Q96JQ0 3298 aa1.72□□□□□ -2.13
BRCA1-212ENST00000473961 A0A087WTM6 91 aa1.72□□□□□ -2.13
BRCA1-212ENST00000473961 DEFB4AO15263 64 aa1.72□□□□□ -2.13
BRCA1-212ENST00000473961 DEFB135Q30KP9 77 aa1.72□□□□□ -2.13
BRCA1-212ENST00000473961 KRTAP21-3Q3LHN1 58 aa1.72□□□□□ -2.13
BRCA1-212ENST00000473961 Q6ZSA8 131 aa1.72□□□□□ -2.13
BRCA1-212ENST00000473961 SSBP3-AS1Q7Z2R9 100 aa1.72□□□□□ -2.13
BRCA1-212ENST00000473961 DMXL2Q8TDJ6 3036 aa1.72□□□□□ -2.13
BRCA1-212ENST00000473961 ALMS1Q8TCU4 4167 aa1.72□□□□□ -2.13
BRCA1-212ENST00000473961 ACACAQ13085 2346 aa1.72□□□□□ -2.13
BRCA1-212ENST00000473961 TACC2O95359 2948 aa1.71□□□□□ -2.14
BRCA1-212ENST00000473961 CDH23Q9H251 3354 aa1.71□□□□□ -2.14
BRCA1-212ENST00000473961 DMDP11532 3685 aa1.71□□□□□ -2.14
BRCA1-212ENST00000473961 A0A096LNI7 61 aa1.71□□□□□ -2.14
BRCA1-212ENST00000473961 H0YAA0 97 aa1.71□□□□□ -2.14
BRCA1-212ENST00000473961 SPEGQ15772 3267 aa1.71□□□□□ -2.14
BRCA1-212ENST00000473961 FN1P02751 2386 aaKnown RBP1.71□□□□□ -2.14
BRCA1-212ENST00000473961 KMT2BQ9UMN6 2715 aaPredicted RBP1.7□□□□□ -2.14
BRCA1-212ENST00000473961 ZDBF2Q9HCK1 2354 aa1.7□□□□□ -2.14
BRCA1-212ENST00000473961 SPTAN1Q13813 2472 aaKnown RBP1.7□□□□□ -2.14
BRCA1-212ENST00000473961 CREBBPQ92793 2442 aa1.7□□□□□ -2.14
BRCA1-212ENST00000473961 PRRC2CQ9Y520 2896 aaKnown RBP1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms