RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 PCOTHQ58A44 107 aa10.19□□□□□ -0.78
CCDC88B-206ENST00000473405 Q5XG85 94 aa10.19□□□□□ -0.78
CCDC88B-206ENST00000473405 C1orf195Q5TG92 126 aa10.16□□□□□ -0.78
CCDC88B-206ENST00000473405 SMIM11BQ8TCY0 68 aa10.16□□□□□ -0.78
CCDC88B-206ENST00000473405 A4D1N5 150 aa10.15□□□□□ -0.78
CCDC88B-206ENST00000473405 HIGD1BQ9P298 99 aa10.15□□□□□ -0.78
CCDC88B-206ENST00000473405 FSIP2Q5CZC0 6907 aa10.14□□□□□ -0.79
CCDC88B-206ENST00000473405 IGLV8-61A0A075B6I0 122 aa10.14□□□□□ -0.79
CCDC88B-206ENST00000473405 TRAV13-2A0A0B4J235 113 aa10.14□□□□□ -0.79
CCDC88B-206ENST00000473405 UQCR10Q9UDW1 63 aa10.13□□□□□ -0.79
CCDC88B-206ENST00000473405 LCE2DQ5TA82 110 aaPredicted RBP10.12□□□□□ -0.79
CCDC88B-206ENST00000473405 NHP2Q9NX24 153 aaKnown RBP10.12□□□□□ -0.79
CCDC88B-206ENST00000473405 MT1HP80294 61 aa10.1□□□□□ -0.79
CCDC88B-206ENST00000473405 LINC00575Q6W349 94 aa10.06□□□□□ -0.8
CCDC88B-206ENST00000473405 TSTD3H0UI37 97 aa10.04□□□□□ -0.8
CCDC88B-206ENST00000473405 RPL37P61927 97 aaKnown RBP10.04□□□□□ -0.8
CCDC88B-206ENST00000473405 Q6ZQY7 126 aa10.03□□□□□ -0.8
CCDC88B-206ENST00000473405 HIST1H4GQ99525 98 aa10.03□□□□□ -0.8
CCDC88B-206ENST00000473405 FLGP20930 4061 aaPredicted RBP10.03□□□□□ -0.8
CCDC88B-206ENST00000473405 F8WEM9 126 aa10.02□□□□□ -0.81
CCDC88B-206ENST00000473405 TCL1BO95988 128 aa10.02□□□□□ -0.81
CCDC88B-206ENST00000473405 HSD52Q0P140 79 aa10.02□□□□□ -0.81
CCDC88B-206ENST00000473405 VAMP3Q15836 100 aa10.02□□□□□ -0.81
CCDC88B-206ENST00000473405 hADV29S1A0JD25 119 aa10□□□□□ -0.81
CCDC88B-206ENST00000473405 CEND1Q8N111 149 aa10□□□□□ -0.81
CCDC88B-206ENST00000473405 FXYD2P54710 66 aa9.99□□□□□ -0.81
CCDC88B-206ENST00000473405 IGFL1Q6UW32 110 aa9.98□□□□□ -0.81
CCDC88B-206ENST00000473405 CLEC2BQ92478 149 aa9.98□□□□□ -0.81
CCDC88B-206ENST00000473405 Q6JHZ5 121 aa9.97□□□□□ -0.81
CCDC88B-206ENST00000473405 CFC1BP0CG36 223 aa9.96□□□□□ -0.82
CCDC88B-206ENST00000473405 TRBV7-7A0A0K0K1E9 115 aa9.95□□□□□ -0.82
CCDC88B-206ENST00000473405 LORP23490 312 aaPredicted RBP9.94□□□□□ -0.82
CCDC88B-206ENST00000473405 BVES-AS1Q5T3Y7 98 aa9.94□□□□□ -0.82
CCDC88B-206ENST00000473405 CFC1P0CG37 223 aa9.93□□□□□ -0.82
CCDC88B-206ENST00000473405 OCIAD2Q56VL3 154 aa9.93□□□□□ -0.82
CCDC88B-206ENST00000473405 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.93□□□□□ -0.82
CCDC88B-206ENST00000473405 KRTAP10-6P60371 365 aaPredicted RBP9.92□□□□□ -0.82
CCDC88B-206ENST00000473405 CRCT1Q9UGL9 99 aa9.92□□□□□ -0.82
CCDC88B-206ENST00000473405 A0A0B4J2C4 111 aa9.91□□□□□ -0.82
CCDC88B-206ENST00000473405 PPDPFLQ8WWR9 84 aa9.9□□□□□ -0.82
CCDC88B-206ENST00000473405 TMEM238LA0A1B0GVL6 79 aa9.88□□□□□ -0.83
CCDC88B-206ENST00000473405 A6NJY4 79 aa9.88□□□□□ -0.83
CCDC88B-206ENST00000473405 H3BUT2 72 aa9.87□□□□□ -0.83
CCDC88B-206ENST00000473405 OBSCN-AS1Q96MR7 158 aa9.87□□□□□ -0.83
CCDC88B-206ENST00000473405 K7ERJ3 54 aa9.86□□□□□ -0.83
CCDC88B-206ENST00000473405 M0R143 59 aa9.86□□□□□ -0.83
CCDC88B-206ENST00000473405 COX6B2Q6YFQ2 88 aa9.85□□□□□ -0.83
CCDC88B-206ENST00000473405 SNHG12Q9BXW3 62 aa9.84□□□□□ -0.83
CCDC88B-206ENST00000473405 M0R2T5 61 aa9.83□□□□□ -0.84
CCDC88B-206ENST00000473405 Q75L30 129 aa9.83□□□□□ -0.84
CCDC88B-206ENST00000473405 RAB37Q96AX2 223 aa9.82□□□□□ -0.84
CCDC88B-206ENST00000473405 PRO1854Q9UHT4 67 aa9.82□□□□□ -0.84
CCDC88B-206ENST00000473405 PCP4L1A6NKN8 68 aa9.81□□□□□ -0.84
CCDC88B-206ENST00000473405 LST1O00453 97 aa9.8□□□□□ -0.84
CCDC88B-206ENST00000473405 FAM218AQ96MZ4 157 aa9.8□□□□□ -0.84
CCDC88B-206ENST00000473405 Q6Q795 121 aa9.78□□□□□ -0.84
CCDC88B-206ENST00000473405 ATP11AUNQ6ZP68 121 aa9.77□□□□□ -0.85
CCDC88B-206ENST00000473405 BATFQ16520 125 aa9.76□□□□□ -0.85
CCDC88B-206ENST00000473405 H0YGX0 51 aa9.75□□□□□ -0.85
CCDC88B-206ENST00000473405 SS18L2Q9UHA2 77 aa9.75□□□□□ -0.85
CCDC88B-206ENST00000473405 NDUFV3P56181 108 aaKnown RBP9.74□□□□□ -0.85
CCDC88B-206ENST00000473405 TRIAP1O43715 76 aa9.73□□□□□ -0.85
CCDC88B-206ENST00000473405 TEN1Q86WV5 123 aa9.73□□□□□ -0.85
CCDC88B-206ENST00000473405 Q96NJ1 140 aa9.73□□□□□ -0.85
CCDC88B-206ENST00000473405 TAX1BP3O14907 124 aa9.72□□□□□ -0.85
CCDC88B-206ENST00000473405 C20orf166-AS1Q96NR2 134 aa9.71□□□□□ -0.86
CCDC88B-206ENST00000473405 A0A087WSZ3 146 aa9.7□□□□□ -0.86
CCDC88B-206ENST00000473405 SNCGO76070 127 aa9.7□□□□□ -0.86
CCDC88B-206ENST00000473405 A8MUU9 505 aa9.68□□□□□ -0.86
CCDC88B-206ENST00000473405 H3BMG7 143 aa9.67□□□□□ -0.86
CCDC88B-206ENST00000473405 NAA38Q9BRA0 125 aaKnown RBP9.67□□□□□ -0.86
CCDC88B-206ENST00000473405 A0A1B0GX51 115 aa9.66□□□□□ -0.86
CCDC88B-206ENST00000473405 COL5A1-AS1Q5SY13 56 aa9.66□□□□□ -0.86
CCDC88B-206ENST00000473405 C9orf118A6NHY6 69 aa9.65□□□□□ -0.86
CCDC88B-206ENST00000473405 A0A1W2PNM2 257 aa9.64□□□□□ -0.87
CCDC88B-206ENST00000473405 FABP2P12104 132 aa9.64□□□□□ -0.87
CCDC88B-206ENST00000473405 PSMB2P49721 201 aa9.62□□□□□ -0.87
CCDC88B-206ENST00000473405 DSCR10P59022 87 aa9.62□□□□□ -0.87
CCDC88B-206ENST00000473405 GHRHP01286 108 aa9.61□□□□□ -0.87
CCDC88B-206ENST00000473405 A0A1W2PPM0 123 aa9.58□□□□□ -0.88
CCDC88B-206ENST00000473405 COX6CP09669 75 aa9.58□□□□□ -0.88
CCDC88B-206ENST00000473405 SIGMAR1Q99720 223 aa9.58□□□□□ -0.88
CCDC88B-206ENST00000473405 KRTAP16-1A8MUX0 517 aa9.55□□□□□ -0.88
CCDC88B-206ENST00000473405 TRBV7-4A0A0J9YYF1 115 aa9.54□□□□□ -0.88
CCDC88B-206ENST00000473405 A0A1B0GV72 72 aa9.54□□□□□ -0.88
CCDC88B-206ENST00000473405 SCGB1C2P0DMR2 95 aa9.54□□□□□ -0.88
CCDC88B-206ENST00000473405 ORMDL1Q9P0S3 153 aa9.54□□□□□ -0.88
CCDC88B-206ENST00000473405 TRACP01848 142 aa9.53□□□□□ -0.88
CCDC88B-206ENST00000473405 ANKRD29Q8N6D5 301 aa9.53□□□□□ -0.88
CCDC88B-206ENST00000473405 KRTAP9-8Q9BYQ0 159 aa9.53□□□□□ -0.88
CCDC88B-206ENST00000473405 USH2AO75445 5202 aa9.53□□□□□ -0.88
CCDC88B-206ENST00000473405 DNAL4O96015 105 aa9.52□□□□□ -0.89
CCDC88B-206ENST00000473405 LYRM7Q5U5X0 104 aa9.52□□□□□ -0.89
CCDC88B-206ENST00000473405 TRBV20-1A0A075B6N2 111 aa9.51□□□□□ -0.89
CCDC88B-206ENST00000473405 IGKV4-1P06312 121 aa9.51□□□□□ -0.89
CCDC88B-206ENST00000473405 LINC00313P59037 77 aa9.51□□□□□ -0.89
CCDC88B-206ENST00000473405 NOTCH2NLQ7Z3S9 236 aa9.5□□□□□ -0.89
CCDC88B-206ENST00000473405 ATXN8Q156A1 80 aa9.49□□□□□ -0.89
CCDC88B-206ENST00000473405 H3BQ85 93 aa9.48□□□□□ -0.89
CCDC88B-206ENST00000473405 LINC00472Q9H8W2 130 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms