RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 Q5XG85 94 aa10.69□□□□□ -0.7
COL9A3-210ENST00000472880 NHP2Q9NX24 153 aaKnown RBP10.69□□□□□ -0.7
COL9A3-210ENST00000472880 HIGD1BQ9P298 99 aa10.69□□□□□ -0.7
COL9A3-210ENST00000472880 VAMP3Q15836 100 aa10.68□□□□□ -0.7
COL9A3-210ENST00000472880 KRTAP19-2Q3LHN2 52 aa10.68□□□□□ -0.7
COL9A3-210ENST00000472880 C2orf91Q6ZV80 131 aa10.67□□□□□ -0.7
COL9A3-210ENST00000472880 C1orf195Q5TG92 126 aa10.66□□□□□ -0.7
COL9A3-210ENST00000472880 TMA7Q9Y2S6 64 aaKnown RBP10.66□□□□□ -0.7
COL9A3-210ENST00000472880 MT1HP80294 61 aa10.65□□□□□ -0.7
COL9A3-210ENST00000472880 PYY3Q5JQD4 70 aa10.65□□□□□ -0.7
COL9A3-210ENST00000472880 A0A0G2JQZ4 141 aa10.64□□□□□ -0.71
COL9A3-210ENST00000472880 LINC00575Q6W349 94 aa10.64□□□□□ -0.71
COL9A3-210ENST00000472880 CFC1BP0CG36 223 aa10.62□□□□□ -0.71
COL9A3-210ENST00000472880 CFC1P0CG37 223 aa10.62□□□□□ -0.71
COL9A3-210ENST00000472880 hADV29S1A0JD25 119 aa10.6□□□□□ -0.71
COL9A3-210ENST00000472880 BVES-AS1Q5T3Y7 98 aa10.6□□□□□ -0.71
COL9A3-210ENST00000472880 A0A0B4J2C4 111 aa10.59□□□□□ -0.71
COL9A3-210ENST00000472880 F8WEM9 126 aa10.59□□□□□ -0.71
COL9A3-210ENST00000472880 TCL1BO95988 128 aa10.59□□□□□ -0.71
COL9A3-210ENST00000472880 RPL37P61927 97 aaKnown RBP10.59□□□□□ -0.71
COL9A3-210ENST00000472880 RAB37Q96AX2 223 aa10.59□□□□□ -0.71
COL9A3-210ENST00000472880 CEND1Q8N111 149 aa10.58□□□□□ -0.72
COL9A3-210ENST00000472880 Q6ZQY7 126 aa10.57□□□□□ -0.72
COL9A3-210ENST00000472880 CRCT1Q9UGL9 99 aa10.57□□□□□ -0.72
COL9A3-210ENST00000472880 TMEM238LA0A1B0GVL6 79 aa10.53□□□□□ -0.72
COL9A3-210ENST00000472880 A6NJY4 79 aa10.53□□□□□ -0.72
COL9A3-210ENST00000472880 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.53□□□□□ -0.72
COL9A3-210ENST00000472880 FXYD2P54710 66 aa10.52□□□□□ -0.73
COL9A3-210ENST00000472880 COX6B2Q6YFQ2 88 aa10.51□□□□□ -0.73
COL9A3-210ENST00000472880 M0R2T5 61 aa10.49□□□□□ -0.73
COL9A3-210ENST00000472880 HSD52Q0P140 79 aa10.49□□□□□ -0.73
COL9A3-210ENST00000472880 Q6JHZ5 121 aa10.49□□□□□ -0.73
COL9A3-210ENST00000472880 PRO1854Q9UHT4 67 aa10.49□□□□□ -0.73
COL9A3-210ENST00000472880 FSIP2Q5CZC0 6907 aa10.49□□□□□ -0.73
COL9A3-210ENST00000472880 H0YGX0 51 aa10.48□□□□□ -0.73
COL9A3-210ENST00000472880 KRTAP10-6P60371 365 aaPredicted RBP10.48□□□□□ -0.73
COL9A3-210ENST00000472880 PPDPFLQ8WWR9 84 aa10.48□□□□□ -0.73
COL9A3-210ENST00000472880 CLEC2BQ92478 149 aa10.48□□□□□ -0.73
COL9A3-210ENST00000472880 LORP23490 312 aaPredicted RBP10.47□□□□□ -0.73
COL9A3-210ENST00000472880 FAM218AQ96MZ4 157 aa10.46□□□□□ -0.73
COL9A3-210ENST00000472880 TRBV7-7A0A0K0K1E9 115 aa10.45□□□□□ -0.74
COL9A3-210ENST00000472880 UQCR10Q9UDW1 63 aa10.45□□□□□ -0.74
COL9A3-210ENST00000472880 IGFL1Q6UW32 110 aa10.44□□□□□ -0.74
COL9A3-210ENST00000472880 SNCGO76070 127 aa10.43□□□□□ -0.74
COL9A3-210ENST00000472880 OCIAD2Q56VL3 154 aa10.42□□□□□ -0.74
COL9A3-210ENST00000472880 SNHG12Q9BXW3 62 aa10.42□□□□□ -0.74
COL9A3-210ENST00000472880 TRIAP1O43715 76 aa10.41□□□□□ -0.74
COL9A3-210ENST00000472880 A0A1B0GX51 115 aa10.39□□□□□ -0.75
COL9A3-210ENST00000472880 K7ERJ3 54 aa10.39□□□□□ -0.75
COL9A3-210ENST00000472880 OBSCN-AS1Q96MR7 158 aa10.38□□□□□ -0.75
COL9A3-210ENST00000472880 ATP11AUNQ6ZP68 121 aa10.36□□□□□ -0.75
COL9A3-210ENST00000472880 H3BUT2 72 aa10.35□□□□□ -0.75
COL9A3-210ENST00000472880 Q75L30 129 aa10.35□□□□□ -0.75
COL9A3-210ENST00000472880 LST1O00453 97 aa10.33□□□□□ -0.76
COL9A3-210ENST00000472880 PSMB2P49721 201 aa10.33□□□□□ -0.76
COL9A3-210ENST00000472880 NDUFV3P56181 108 aaKnown RBP10.33□□□□□ -0.76
COL9A3-210ENST00000472880 FLGP20930 4061 aaPredicted RBP10.32□□□□□ -0.76
COL9A3-210ENST00000472880 GHRHP01286 108 aa10.32□□□□□ -0.76
COL9A3-210ENST00000472880 Q6Q795 121 aa10.31□□□□□ -0.76
COL9A3-210ENST00000472880 COX6CP09669 75 aa10.29□□□□□ -0.76
COL9A3-210ENST00000472880 FABP2P12104 132 aa10.29□□□□□ -0.76
COL9A3-210ENST00000472880 SS18L2Q9UHA2 77 aa10.29□□□□□ -0.76
COL9A3-210ENST00000472880 DNAL4O96015 105 aa10.27□□□□□ -0.77
COL9A3-210ENST00000472880 SMIM6P0DI80 62 aa10.27□□□□□ -0.77
COL9A3-210ENST00000472880 Q96NJ1 140 aa10.27□□□□□ -0.77
COL9A3-210ENST00000472880 H3BMG7 143 aa10.26□□□□□ -0.77
COL9A3-210ENST00000472880 ORMDL1Q9P0S3 153 aa10.25□□□□□ -0.77
COL9A3-210ENST00000472880 TEN1Q86WV5 123 aa10.23□□□□□ -0.77
COL9A3-210ENST00000472880 H3BQ85 93 aa10.22□□□□□ -0.77
COL9A3-210ENST00000472880 C20orf166-AS1Q96NR2 134 aa10.2□□□□□ -0.78
COL9A3-210ENST00000472880 TMEM256-PLSCR3K7ERE1 68 aa10.19□□□□□ -0.78
COL9A3-210ENST00000472880 M0R143 59 aa10.19□□□□□ -0.78
COL9A3-210ENST00000472880 SCGB1C2P0DMR2 95 aa10.19□□□□□ -0.78
COL9A3-210ENST00000472880 A0A087WSZ3 146 aa10.18□□□□□ -0.78
COL9A3-210ENST00000472880 TRACP01848 142 aa10.18□□□□□ -0.78
COL9A3-210ENST00000472880 A8MUU9 505 aa10.16□□□□□ -0.78
COL9A3-210ENST00000472880 A0A1B0GV72 72 aa10.15□□□□□ -0.78
COL9A3-210ENST00000472880 A0A1W2PNM2 257 aa10.15□□□□□ -0.78
COL9A3-210ENST00000472880 TRBV20-1A0A075B6N2 111 aa10.14□□□□□ -0.79
COL9A3-210ENST00000472880 ANKRD29Q8N6D5 301 aa10.14□□□□□ -0.79
COL9A3-210ENST00000472880 UBE2V1Q13404 147 aa10.13□□□□□ -0.79
COL9A3-210ENST00000472880 LOC105371267A0A1B0GV96 52 aa10.12□□□□□ -0.79
COL9A3-210ENST00000472880 TSTD3H0UI37 97 aa10.11□□□□□ -0.79
COL9A3-210ENST00000472880 SIGMAR1Q99720 223 aa10.11□□□□□ -0.79
COL9A3-210ENST00000472880 DSCR10P59022 87 aa10.1□□□□□ -0.79
COL9A3-210ENST00000472880 TRBV7-4A0A0J9YYF1 115 aa10.09□□□□□ -0.79
COL9A3-210ENST00000472880 NAA38Q9BRA0 125 aaKnown RBP10.09□□□□□ -0.79
COL9A3-210ENST00000472880 CCKP06307 115 aa10.05□□□□□ -0.8
COL9A3-210ENST00000472880 BAALC-AS2P0C853 105 aa10.04□□□□□ -0.8
COL9A3-210ENST00000472880 ATXN8Q156A1 80 aa10.04□□□□□ -0.8
COL9A3-210ENST00000472880 RBM3P98179 157 aaKnown RBP10.03□□□□□ -0.8
COL9A3-210ENST00000472880 IGKV4-1P06312 121 aa10.01□□□□□ -0.81
COL9A3-210ENST00000472880 LINC00313P59037 77 aa10.01□□□□□ -0.81
COL9A3-210ENST00000472880 BATFQ16520 125 aa10.01□□□□□ -0.81
COL9A3-210ENST00000472880 KRTAP9-8Q9BYQ0 159 aa10.01□□□□□ -0.81
COL9A3-210ENST00000472880 DSCR8Q96T75 97 aa10□□□□□ -0.81
COL9A3-210ENST00000472880 FAM236DA0A1B0GTK5 79 aa9.99□□□□□ -0.81
COL9A3-210ENST00000472880 FAM236CP0DP71 79 aa9.99□□□□□ -0.81
COL9A3-210ENST00000472880 LYRM7Q5U5X0 104 aa9.98□□□□□ -0.81
COL9A3-210ENST00000472880 VPS25Q9BRG1 176 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 126.5 ms