RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 AKAP13Q12802 2813 aa11.76□□□□□ -0.53
CCDC88B-204ENST00000463837 TNP2Q05952 138 aa11.76□□□□□ -0.53
CCDC88B-204ENST00000463837 STAB1Q9NY15 2570 aa11.75□□□□□ -0.53
CCDC88B-204ENST00000463837 CFAP46Q8IYW2 2715 aa11.7□□□□□ -0.54
CCDC88B-204ENST00000463837 KRTAP26-1Q6PEX3 210 aa11.7□□□□□ -0.54
CCDC88B-204ENST00000463837 PRAC1Q96KF2 57 aa11.7□□□□□ -0.54
CCDC88B-204ENST00000463837 BRCA2P51587 3418 aa11.69□□□□□ -0.54
CCDC88B-204ENST00000463837 LINC01554Q52M75 96 aa11.69□□□□□ -0.54
CCDC88B-204ENST00000463837 TRANK1O15050 2925 aa11.69□□□□□ -0.54
CCDC88B-204ENST00000463837 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.69□□□□□ -0.54
CCDC88B-204ENST00000463837 CHD6Q8TD26 2715 aa11.67□□□□□ -0.54
CCDC88B-204ENST00000463837 A0A1B0GU33 70 aa11.65□□□□□ -0.54
CCDC88B-204ENST00000463837 PLAC8Q9NZF1 115 aa11.64□□□□□ -0.55
CCDC88B-204ENST00000463837 LAMA2P24043 3122 aaKnown RBP11.64□□□□□ -0.55
CCDC88B-204ENST00000463837 SPINK7P58062 85 aa11.62□□□□□ -0.55
CCDC88B-204ENST00000463837 Q6ZSA8 131 aa11.61□□□□□ -0.55
CCDC88B-204ENST00000463837 Q5W150 140 aa11.57□□□□□ -0.56
CCDC88B-204ENST00000463837 MGAQ8IWI9 3026 aa11.57□□□□□ -0.56
CCDC88B-204ENST00000463837 ZCCHC13Q8WW36 166 aaKnown RBP11.55□□□□□ -0.56
CCDC88B-204ENST00000463837 KRTAP4-16G5E9R7 235 aaPredicted RBP11.54□□□□□ -0.56
CCDC88B-204ENST00000463837 SETXQ7Z333 2677 aaKnown RBP11.53□□□□□ -0.56
CCDC88B-204ENST00000463837 PRUNE2Q8WUY3 3088 aa11.52□□□□□ -0.57
CCDC88B-204ENST00000463837 GCN1Q92616 2671 aaKnown RBP11.5□□□□□ -0.57
CCDC88B-204ENST00000463837 ZNF292O60281 2723 aa11.5□□□□□ -0.57
CCDC88B-204ENST00000463837 KRTAP29-1A8MX34 341 aaPredicted RBP11.5□□□□□ -0.57
CCDC88B-204ENST00000463837 Q6ZR54 194 aa11.5□□□□□ -0.57
CCDC88B-204ENST00000463837 CSAG1Q6PB30 78 aa11.49□□□□□ -0.57
CCDC88B-204ENST00000463837 DMAC1Q96GE9 116 aa11.48□□□□□ -0.57
CCDC88B-204ENST00000463837 UNC79Q9P2D8 2635 aa11.47□□□□□ -0.57
CCDC88B-204ENST00000463837 LINC00483Q53H64 154 aa11.46□□□□□ -0.58
CCDC88B-204ENST00000463837 TEP1Q99973 2627 aaKnown RBP11.46□□□□□ -0.58
CCDC88B-204ENST00000463837 ASB16-AS1Q495Z4 193 aa11.45□□□□□ -0.58
CCDC88B-204ENST00000463837 UNC80Q8N2C7 3258 aa11.44□□□□□ -0.58
CCDC88B-204ENST00000463837 LUZP6Q538Z0 58 aa11.41□□□□□ -0.58
CCDC88B-204ENST00000463837 NBEAL1Q6ZS30 2694 aa11.41□□□□□ -0.58
CCDC88B-204ENST00000463837 WDFY4Q6ZS81 3184 aa11.41□□□□□ -0.58
CCDC88B-204ENST00000463837 KRTAP1-5Q9BYS1 174 aa11.38□□□□□ -0.59
CCDC88B-204ENST00000463837 LCE6AA0A183 80 aa11.38□□□□□ -0.59
CCDC88B-204ENST00000463837 TRIOO75962 3097 aa11.37□□□□□ -0.59
CCDC88B-204ENST00000463837 M0R2T5 61 aa11.36□□□□□ -0.59
CCDC88B-204ENST00000463837 MAP1AP78559 2803 aaPredicted RBP11.36□□□□□ -0.59
CCDC88B-204ENST00000463837 TEX15Q9BXT5 2789 aa11.35□□□□□ -0.59
CCDC88B-204ENST00000463837 NOTCH1P46531 2555 aa11.34□□□□□ -0.59
CCDC88B-204ENST00000463837 COL6A5A8TX70 2615 aa11.34□□□□□ -0.59
CCDC88B-204ENST00000463837 NBEAL2Q6ZNJ1 2754 aa11.33□□□□□ -0.6
CCDC88B-204ENST00000463837 XIRP2A4UGR9 3374 aa11.3□□□□□ -0.6
CCDC88B-204ENST00000463837 FREM2Q5SZK8 3169 aa11.29□□□□□ -0.6
CCDC88B-204ENST00000463837 FRYQ5TBA9 3013 aa11.28□□□□□ -0.6
CCDC88B-204ENST00000463837 CAMK2N1Q7Z7J9 78 aa11.28□□□□□ -0.6
CCDC88B-204ENST00000463837 S4R3F8 94 aa11.24□□□□□ -0.61
CCDC88B-204ENST00000463837 SEC61BP60468 96 aaKnown RBP11.24□□□□□ -0.61
CCDC88B-204ENST00000463837 VPS13AQ96RL7 3174 aa11.23□□□□□ -0.61
CCDC88B-204ENST00000463837 CDH23Q9H251 3354 aa11.23□□□□□ -0.61
CCDC88B-204ENST00000463837 DSPP15924 2871 aaKnown RBP11.23□□□□□ -0.61
CCDC88B-204ENST00000463837 FLG2Q5D862 2391 aaPredicted RBP11.21□□□□□ -0.61
CCDC88B-204ENST00000463837 Q5VSD8 79 aa11.2□□□□□ -0.62
CCDC88B-204ENST00000463837 SPATA8Q6RVD6 105 aa11.19□□□□□ -0.62
CCDC88B-204ENST00000463837 H1FX-AS1Q4G0G2 97 aa11.18□□□□□ -0.62
CCDC88B-204ENST00000463837 RPL37P61927 97 aaKnown RBP11.17□□□□□ -0.62
CCDC88B-204ENST00000463837 ROMO1P60602 79 aa11.16□□□□□ -0.62
CCDC88B-204ENST00000463837 A6NN06 94 aa11.15□□□□□ -0.62
CCDC88B-204ENST00000463837 KRTAP10-1P60331 282 aa11.13□□□□□ -0.63
CCDC88B-204ENST00000463837 PANO1I0J062 215 aa11.13□□□□□ -0.63
CCDC88B-204ENST00000463837 BAHCC1Q9P281 2608 aa11.1□□□□□ -0.63
CCDC88B-204ENST00000463837 IGSF10Q6WRI0 2623 aa11.1□□□□□ -0.63
CCDC88B-204ENST00000463837 A0A087X002 238 aa11.09□□□□□ -0.63
CCDC88B-204ENST00000463837 NOTCH2NLQ7Z3S9 236 aa11.09□□□□□ -0.63
CCDC88B-204ENST00000463837 KRTAP10-2P60368 255 aa11.08□□□□□ -0.64
CCDC88B-204ENST00000463837 DMBT1Q9UGM3 2413 aaPredicted RBP11.07□□□□□ -0.64
CCDC88B-204ENST00000463837 NBEAQ8NFP9 2946 aa11.07□□□□□ -0.64
CCDC88B-204ENST00000463837 CELSR3Q9NYQ7 3312 aa11.06□□□□□ -0.64
CCDC88B-204ENST00000463837 KALRNO60229 2985 aa11.06□□□□□ -0.64
CCDC88B-204ENST00000463837 KRTAP7-1Q8IUC3 87 aa11.05□□□□□ -0.64
CCDC88B-204ENST00000463837 UBR5O95071 2799 aaPredicted RBP11.05□□□□□ -0.64
CCDC88B-204ENST00000463837 R4GN34 69 aa11□□□□□ -0.65
CCDC88B-204ENST00000463837 SZT2Q5T011 3432 aa11□□□□□ -0.65
CCDC88B-204ENST00000463837 KRTAP11-1Q8IUC1 163 aa10.98□□□□□ -0.65
CCDC88B-204ENST00000463837 A8MU10 97 aa10.97□□□□□ -0.65
CCDC88B-204ENST00000463837 A0A0A0MQY5 61 aa10.97□□□□□ -0.65
CCDC88B-204ENST00000463837 KRTAP13-1Q8IUC0 172 aa10.94□□□□□ -0.66
CCDC88B-204ENST00000463837 RPS29P62273 56 aaKnown RBP10.93□□□□□ -0.66
CCDC88B-204ENST00000463837 STAB2Q8WWQ8 2551 aa10.92□□□□□ -0.66
CCDC88B-204ENST00000463837 LAMA1P25391 3075 aa10.91□□□□□ -0.66
CCDC88B-204ENST00000463837 Q6ZRN7 208 aaPredicted RBP10.89□□□□□ -0.67
CCDC88B-204ENST00000463837 ADM2Q7Z4H4 148 aa10.88□□□□□ -0.67
CCDC88B-204ENST00000463837 VCANP13611 3396 aa10.87□□□□□ -0.67
CCDC88B-204ENST00000463837 ITPR1Q14643 2758 aa10.87□□□□□ -0.67
CCDC88B-204ENST00000463837 KRTAP25-1Q3LHN0 102 aa10.86□□□□□ -0.67
CCDC88B-204ENST00000463837 DNAH14Q0VDD8 3507 aa10.84□□□□□ -0.67
CCDC88B-204ENST00000463837 NSD1Q96L73 2696 aaPredicted RBP10.84□□□□□ -0.67
CCDC88B-204ENST00000463837 M0QZ58 72 aa10.84□□□□□ -0.67
CCDC88B-204ENST00000463837 DMXL2Q8TDJ6 3036 aa10.82□□□□□ -0.68
CCDC88B-204ENST00000463837 ASH1LQ9NR48 2969 aaKnown RBP10.81□□□□□ -0.68
CCDC88B-204ENST00000463837 KRTAP21-3Q3LHN1 58 aa10.8□□□□□ -0.68
CCDC88B-204ENST00000463837 FLNCQ14315 2725 aa10.78□□□□□ -0.68
CCDC88B-204ENST00000463837 TACC2O95359 2948 aa10.78□□□□□ -0.68
CCDC88B-204ENST00000463837 KRTAP16-1A8MUX0 517 aa10.76□□□□□ -0.69
CCDC88B-204ENST00000463837 ADGRG4Q8IZF6 3080 aa10.75□□□□□ -0.69
CCDC88B-204ENST00000463837 ATMQ13315 3056 aa10.75□□□□□ -0.69
CCDC88B-204ENST00000463837 FRYLO94915 3013 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms