RNA–Protein interactions for RNA: ENST00000463147.1

USH2A-203, Transcript of usherin, humanhuman

TSL 2

Gene USH2A, Length 618 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-203ENST00000463147 DEFB136Q30KP8 78 aa1.25□□□□□ -2.21
USH2A-203ENST00000463147 MRPL34Q9BQ48 92 aaKnown RBP1.25□□□□□ -2.21
USH2A-203ENST00000463147 LINC00472Q9H8W2 130 aa1.25□□□□□ -2.21
USH2A-203ENST00000463147 ABCA4P78363 2273 aa1.25□□□□□ -2.21
USH2A-203ENST00000463147 TENM1Q9UKZ4 2725 aa1.24□□□□□ -2.21
USH2A-203ENST00000463147 DOPEY2Q9Y3R5 2298 aa1.24□□□□□ -2.21
USH2A-203ENST00000463147 A0A096LPF7 62 aa1.24□□□□□ -2.21
USH2A-203ENST00000463147 SPRR1AP35321 89 aa1.24□□□□□ -2.21
USH2A-203ENST00000463147 LELP1Q5T871 98 aa1.24□□□□□ -2.21
USH2A-203ENST00000463147 SSBP3-AS1Q7Z2R9 100 aa1.24□□□□□ -2.21
USH2A-203ENST00000463147 DEFB132Q7Z7B7 95 aa1.24□□□□□ -2.21
USH2A-203ENST00000463147 WNK2Q9Y3S1 2297 aa1.23□□□□□ -2.21
USH2A-203ENST00000463147 LY6G6CO95867 125 aa1.22□□□□□ -2.21
USH2A-203ENST00000463147 C10orf99Q6UWK7 81 aa1.22□□□□□ -2.21
USH2A-203ENST00000463147 A0A0C4DFX4 3053 aa1.22□□□□□ -2.21
USH2A-203ENST00000463147 SPTBN1Q01082 2364 aaKnown RBP1.22□□□□□ -2.21
USH2A-203ENST00000463147 ZFHX3Q15911 3703 aa1.22□□□□□ -2.21
USH2A-203ENST00000463147 AHCTF1Q8WYP5 2266 aa1.22□□□□□ -2.21
USH2A-203ENST00000463147 A0A087WTM6 91 aa1.21□□□□□ -2.22
USH2A-203ENST00000463147 SPRR1BP22528 89 aa1.21□□□□□ -2.22
USH2A-203ENST00000463147 ROS1P08922 2347 aa1.2□□□□□ -2.22
USH2A-203ENST00000463147 CACNA1EQ15878 2313 aa1.2□□□□□ -2.22
USH2A-203ENST00000463147 Q96NJ1 140 aa1.2□□□□□ -2.22
USH2A-203ENST00000463147 CEP250Q9BV73 2442 aa1.2□□□□□ -2.22
USH2A-203ENST00000463147 FAM186AA6NE01 2351 aa1.2□□□□□ -2.22
USH2A-203ENST00000463147 PKDREJQ9NTG1 2253 aa1.19□□□□□ -2.22
USH2A-203ENST00000463147 SPTBN2O15020 2390 aa1.19□□□□□ -2.22
USH2A-203ENST00000463147 WNK1Q9H4A3 2382 aa1.19□□□□□ -2.22
USH2A-203ENST00000463147 SPART-AS1P0CW21 52 aa1.19□□□□□ -2.22
USH2A-203ENST00000463147 PRLHP81277 87 aa1.19□□□□□ -2.22
USH2A-203ENST00000463147 CRIPTQ9P021 101 aa1.19□□□□□ -2.22
USH2A-203ENST00000463147 A0A096LNI7 61 aa1.18□□□□□ -2.22
USH2A-203ENST00000463147 H0YAA0 97 aa1.18□□□□□ -2.22
USH2A-203ENST00000463147 H3BNG1 76 aa1.18□□□□□ -2.22
USH2A-203ENST00000463147 HTN3P15516 51 aa1.18□□□□□ -2.22
USH2A-203ENST00000463147 H1FX-AS1Q4G0G2 97 aa1.18□□□□□ -2.22
USH2A-203ENST00000463147 WDR87Q6ZQQ6 2873 aa1.18□□□□□ -2.22
USH2A-203ENST00000463147 K7EIL1 84 aa1.17□□□□□ -2.22
USH2A-203ENST00000463147 SPINK1P00995 79 aa1.17□□□□□ -2.22
USH2A-203ENST00000463147 LINC01556Q5JQF7 62 aa1.17□□□□□ -2.22
USH2A-203ENST00000463147 PLAC4Q8WY50 150 aa1.17□□□□□ -2.22
USH2A-203ENST00000463147 PCNTO95613 3336 aa1.17□□□□□ -2.22
USH2A-203ENST00000463147 COX6B2Q6YFQ2 88 aa1.16□□□□□ -2.22
USH2A-203ENST00000463147 DEFB124Q8NES8 71 aa1.16□□□□□ -2.22
USH2A-203ENST00000463147 MAP1BP46821 2468 aaKnown RBP1.16□□□□□ -2.22
USH2A-203ENST00000463147 APC2O95996 2303 aa1.16□□□□□ -2.22
USH2A-203ENST00000463147 PTPRZ1P23471 2315 aaPredicted RBP1.16□□□□□ -2.22
USH2A-203ENST00000463147 SRCAPQ6ZRS2 3230 aa1.15□□□□□ -2.22
USH2A-203ENST00000463147 HELZ2Q9BYK8 2649 aaKnown RBP1.15□□□□□ -2.23
USH2A-203ENST00000463147 DEFB4AO15263 64 aa1.15□□□□□ -2.23
USH2A-203ENST00000463147 RPL37P61927 97 aaKnown RBP1.15□□□□□ -2.23
USH2A-203ENST00000463147 DEFB135Q30KP9 77 aa1.15□□□□□ -2.23
USH2A-203ENST00000463147 SPINK6Q6UWN8 80 aa1.15□□□□□ -2.23
USH2A-203ENST00000463147 KMT2BQ9UMN6 2715 aaPredicted RBP1.15□□□□□ -2.23
USH2A-203ENST00000463147 PCNX1Q96RV3 2341 aa1.15□□□□□ -2.23
USH2A-203ENST00000463147 CNOT1A5YKK6 2376 aaKnown RBP1.14□□□□□ -2.23
USH2A-203ENST00000463147 TPRP12270 2363 aaKnown RBP1.13□□□□□ -2.23
USH2A-203ENST00000463147 ZDBF2Q9HCK1 2354 aa1.13□□□□□ -2.23
USH2A-203ENST00000463147 EP300Q09472 2414 aaPredicted RBP1.13□□□□□ -2.23
USH2A-203ENST00000463147 AKAP6Q13023 2319 aa1.12□□□□□ -2.23
USH2A-203ENST00000463147 COL6A3P12111 3177 aa1.12□□□□□ -2.23
USH2A-203ENST00000463147 C10orf95Q9H7T3 257 aa1.12□□□□□ -2.23
USH2A-203ENST00000463147 CENPFP49454 3210 aa1.12□□□□□ -2.23
USH2A-203ENST00000463147 ALMS1Q8TCU4 4167 aa1.12□□□□□ -2.23
USH2A-203ENST00000463147 ACACAQ13085 2346 aa1.11□□□□□ -2.23
USH2A-203ENST00000463147 SZT2Q5T011 3432 aa1.11□□□□□ -2.23
USH2A-203ENST00000463147 APLNQ9ULZ1 77 aa1.11□□□□□ -2.23
USH2A-203ENST00000463147 CEP350Q5VT06 3117 aa1.11□□□□□ -2.23
USH2A-203ENST00000463147 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.11□□□□□ -2.23
USH2A-203ENST00000463147 UTRNP46939 3433 aa1.11□□□□□ -2.23
USH2A-203ENST00000463147 UBE2DNLQ8IWF7 75 aa1.1□□□□□ -2.23
USH2A-203ENST00000463147 GOLGB1Q14789 3259 aaKnown RBP1.1□□□□□ -2.23
USH2A-203ENST00000463147 C2CD3Q4AC94 2353 aa1.1□□□□□ -2.23
USH2A-203ENST00000463147 A0A0D9SG42 100 aa1.09□□□□□ -2.23
USH2A-203ENST00000463147 KRTAP5-10Q6L8G5 202 aa1.09□□□□□ -2.23
USH2A-203ENST00000463147 SPTA1P02549 2419 aa1.08□□□□□ -2.24
USH2A-203ENST00000463147 ABCA2Q9BZC7 2435 aa1.08□□□□□ -2.24
USH2A-203ENST00000463147 S4R3F8 94 aa1.08□□□□□ -2.24
USH2A-203ENST00000463147 CACNA1HO95180 2353 aa1.08□□□□□ -2.24
USH2A-203ENST00000463147 NCOR1O75376 2440 aa1.08□□□□□ -2.24
USH2A-203ENST00000463147 UNC80Q8N2C7 3258 aa1.07□□□□□ -2.24
USH2A-203ENST00000463147 DNAH12Q6ZR08 3092 aa1.07□□□□□ -2.24
USH2A-203ENST00000463147 ZZEF1O43149 2961 aa1.07□□□□□ -2.24
USH2A-203ENST00000463147 ANKRD17O75179 2603 aaKnown RBP1.07□□□□□ -2.24
USH2A-203ENST00000463147 IGF2RP11717 2491 aa1.07□□□□□ -2.24
USH2A-203ENST00000463147 ANKHD1Q8IWZ3 2542 aaKnown RBP1.07□□□□□ -2.24
USH2A-203ENST00000463147 MGAQ8IWI9 3026 aa1.06□□□□□ -2.24
USH2A-203ENST00000463147 SPG11Q96JI7 2443 aa1.06□□□□□ -2.24
USH2A-203ENST00000463147 AHNAK2Q8IVF2 5795 aa1.06□□□□□ -2.24
USH2A-203ENST00000463147 RANBP2P49792 3224 aaKnown RBP1.06□□□□□ -2.24
USH2A-203ENST00000463147 DNAH14Q0VDD8 3507 aa1.05□□□□□ -2.24
USH2A-203ENST00000463147 DEFB123Q8N688 67 aa1.05□□□□□ -2.24
USH2A-203ENST00000463147 SPTBN4Q9H254 2564 aa1.05□□□□□ -2.24
USH2A-203ENST00000463147 NBASA2RRP1 2371 aa1.05□□□□□ -2.24
USH2A-203ENST00000463147 CREBBPQ92793 2442 aa1.05□□□□□ -2.24
USH2A-203ENST00000463147 CSPG4Q6UVK1 2322 aa1.04□□□□□ -2.24
USH2A-203ENST00000463147 SPTAN1Q13813 2472 aaKnown RBP1.04□□□□□ -2.24
USH2A-203ENST00000463147 VPS13AQ96RL7 3174 aa1.04□□□□□ -2.24
USH2A-203ENST00000463147 CFAP47Q6ZTR5 3102 aa1.04□□□□□ -2.24
USH2A-203ENST00000463147 EP400Q96L91 3159 aa1.04□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms