RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 MRPL55Q7Z7F7 128 aaKnown RBP7.41□□□□□ -1.22
CPSF3-202ENST00000460593 A0A096LNI7 61 aa7.4□□□□□ -1.22
CPSF3-202ENST00000460593 C16orf90A8MZG2 172 aa7.4□□□□□ -1.22
CPSF3-202ENST00000460593 Q8N9P0 234 aaPredicted RBP7.4□□□□□ -1.23
CPSF3-202ENST00000460593 NSD1Q96L73 2696 aaPredicted RBP7.39□□□□□ -1.23
CPSF3-202ENST00000460593 OXLD1Q5BKU9 147 aa7.38□□□□□ -1.23
CPSF3-202ENST00000460593 IGKV2-24A0A0C4DH68 120 aa7.37□□□□□ -1.23
CPSF3-202ENST00000460593 COL6A5A8TX70 2615 aa7.37□□□□□ -1.23
CPSF3-202ENST00000460593 COL7A1Q02388 2944 aa7.37□□□□□ -1.23
CPSF3-202ENST00000460593 NDUFB1O75438 58 aa7.37□□□□□ -1.23
CPSF3-202ENST00000460593 LINC01556Q5JQF7 62 aa7.37□□□□□ -1.23
CPSF3-202ENST00000460593 A0A1B0GW54 56 aa7.36□□□□□ -1.23
CPSF3-202ENST00000460593 REG3GQ6UW15 175 aa7.36□□□□□ -1.23
CPSF3-202ENST00000460593 CASC2Q6XLA1 102 aa7.36□□□□□ -1.23
CPSF3-202ENST00000460593 DEFB131BA0A096LNP1 70 aa7.36□□□□□ -1.23
CPSF3-202ENST00000460593 LCA10Q71F78 164 aa7.36□□□□□ -1.23
CPSF3-202ENST00000460593 DNAH10Q8IVF4 4471 aa7.35□□□□□ -1.23
CPSF3-202ENST00000460593 CNBPP62633 177 aaKnown RBP7.35□□□□□ -1.23
CPSF3-202ENST00000460593 PCOTHQ58A44 107 aa7.35□□□□□ -1.23
CPSF3-202ENST00000460593 KRTAP29-1A8MX34 341 aaPredicted RBP7.34□□□□□ -1.23
CPSF3-202ENST00000460593 INAFM1C9JVW0 142 aa7.34□□□□□ -1.23
CPSF3-202ENST00000460593 UBE2AP49459 152 aa7.34□□□□□ -1.23
CPSF3-202ENST00000460593 A6NED7 52 aa7.33□□□□□ -1.24
CPSF3-202ENST00000460593 TLX1NBP0CAT3 122 aa7.32□□□□□ -1.24
CPSF3-202ENST00000460593 LINC00588Q9Y4M8 146 aa7.32□□□□□ -1.24
CPSF3-202ENST00000460593 STAB1Q9NY15 2570 aa7.32□□□□□ -1.24
CPSF3-202ENST00000460593 PLA2G2DQ9UNK4 145 aa7.32□□□□□ -1.24
CPSF3-202ENST00000460593 COA5Q86WW8 74 aa7.31□□□□□ -1.24
CPSF3-202ENST00000460593 LYSTQ99698 3801 aa7.31□□□□□ -1.24
CPSF3-202ENST00000460593 IGLV5-37A0A075B6J1 123 aa7.31□□□□□ -1.24
CPSF3-202ENST00000460593 H0Y9J4 135 aa7.3□□□□□ -1.24
CPSF3-202ENST00000460593 KRTAP10-11P60412 298 aa7.3□□□□□ -1.24
CPSF3-202ENST00000460593 KRTAP11-1Q8IUC1 163 aa7.3□□□□□ -1.24
CPSF3-202ENST00000460593 H3BNG1 76 aa7.29□□□□□ -1.24
CPSF3-202ENST00000460593 CD164Q04900 197 aa7.29□□□□□ -1.24
CPSF3-202ENST00000460593 SPAG11AQ6PDA7 123 aa7.29□□□□□ -1.24
CPSF3-202ENST00000460593 NBEAL1Q6ZS30 2694 aa7.28□□□□□ -1.24
CPSF3-202ENST00000460593 C11orf45Q8TAV5 145 aa7.28□□□□□ -1.24
CPSF3-202ENST00000460593 LIMD2Q9BT23 127 aa7.28□□□□□ -1.24
CPSF3-202ENST00000460593 RBM12B-AS1Q9P1G2 102 aa7.28□□□□□ -1.24
CPSF3-202ENST00000460593 C9orf163Q8N9P6 203 aa7.28□□□□□ -1.24
CPSF3-202ENST00000460593 DNAH10OSP0CZ25 163 aa7.27□□□□□ -1.25
CPSF3-202ENST00000460593 CHTF8P0CG12 524 aa7.26□□□□□ -1.25
CPSF3-202ENST00000460593 KTN1-AS1Q86SY8 53 aa7.26□□□□□ -1.25
CPSF3-202ENST00000460593 SPANXA2-OT1Q8N9U9 137 aa7.26□□□□□ -1.25
CPSF3-202ENST00000460593 TENM2Q9NT68 2774 aa7.26□□□□□ -1.25
CPSF3-202ENST00000460593 DNAH1Q9P2D7 4330 aa7.25□□□□□ -1.25
CPSF3-202ENST00000460593 PHF5AQ7RTV0 110 aaKnown RBP7.25□□□□□ -1.25
CPSF3-202ENST00000460593 A8MWP4 228 aa7.24□□□□□ -1.25
CPSF3-202ENST00000460593 KMT2BQ9UMN6 2715 aaPredicted RBP7.24□□□□□ -1.25
CPSF3-202ENST00000460593 LINC00472Q9H8W2 130 aa7.24□□□□□ -1.25
CPSF3-202ENST00000460593 Q75L30 129 aa7.23□□□□□ -1.25
CPSF3-202ENST00000460593 MMP24-AS1A0A0U1RRL7 71 aa7.22□□□□□ -1.25
CPSF3-202ENST00000460593 SPINK7P58062 85 aa7.22□□□□□ -1.25
CPSF3-202ENST00000460593 A6NN06 94 aa7.21□□□□□ -1.25
CPSF3-202ENST00000460593 IGLV8-61A0A075B6I0 122 aa7.21□□□□□ -1.26
CPSF3-202ENST00000460593 ATP11AUNQ6ZP68 121 aa7.2□□□□□ -1.26
CPSF3-202ENST00000460593 IGLV7-46A0A075B6I9 117 aa7.2□□□□□ -1.26
CPSF3-202ENST00000460593 NDUFS5O43920 106 aa7.2□□□□□ -1.26
CPSF3-202ENST00000460593 LOC101927531A0A1B0GV80 90 aa7.19□□□□□ -1.26
CPSF3-202ENST00000460593 MOBPQ13875 183 aa7.19□□□□□ -1.26
CPSF3-202ENST00000460593 H3BPC8 53 aa7.18□□□□□ -1.26
CPSF3-202ENST00000460593 IGLV9-49A0A0B4J1Y8 123 aa7.17□□□□□ -1.26
CPSF3-202ENST00000460593 KRTAP1-5Q9BYS1 174 aa7.17□□□□□ -1.26
CPSF3-202ENST00000460593 CDC42SE1Q9NRR8 79 aa7.16□□□□□ -1.26
CPSF3-202ENST00000460593 DNAH9Q9NYC9 4486 aa7.16□□□□□ -1.26
CPSF3-202ENST00000460593 K7EIL1 84 aa7.15□□□□□ -1.26
CPSF3-202ENST00000460593 STAB2Q8WWQ8 2551 aa7.15□□□□□ -1.27
CPSF3-202ENST00000460593 IGHV6-1A0A0B4J1U7 121 aa7.14□□□□□ -1.27
CPSF3-202ENST00000460593 HRES1P13985 223 aa7.14□□□□□ -1.27
CPSF3-202ENST00000460593 PRR26Q8N8Z3 221 aa7.13□□□□□ -1.27
CPSF3-202ENST00000460593 A0A087X002 238 aa7.13□□□□□ -1.27
CPSF3-202ENST00000460593 NOTCH2NLQ7Z3S9 236 aa7.13□□□□□ -1.27
CPSF3-202ENST00000460593 CMYA5Q8N3K9 4069 aa7.12□□□□□ -1.27
CPSF3-202ENST00000460593 PRAC1Q96KF2 57 aa7.12□□□□□ -1.27
CPSF3-202ENST00000460593 LINC01558Q9Y6Z2 57 aa7.12□□□□□ -1.27
CPSF3-202ENST00000460593 PANO1I0J062 215 aa7.11□□□□□ -1.27
CPSF3-202ENST00000460593 Q96NJ1 140 aa7.11□□□□□ -1.27
CPSF3-202ENST00000460593 C7orf65Q6ZTY9 151 aa7.1□□□□□ -1.27
CPSF3-202ENST00000460593 ANAPC11Q9NYG5 84 aa7.1□□□□□ -1.27
CPSF3-202ENST00000460593 C8orf17Q9NRJ1 99 aa7.09□□□□□ -1.27
CPSF3-202ENST00000460593 ADM2Q7Z4H4 148 aa7.08□□□□□ -1.28
CPSF3-202ENST00000460593 PLAC8Q9NZF1 115 aa7.08□□□□□ -1.28
CPSF3-202ENST00000460593 SPRR1BP22528 89 aa7.07□□□□□ -1.28
CPSF3-202ENST00000460593 HUWE1Q7Z6Z7 4374 aaKnown RBP7.06□□□□□ -1.28
CPSF3-202ENST00000460593 MGAM2Q2M2H8 2515 aa7.05□□□□□ -1.28
CPSF3-202ENST00000460593 DNAH7Q8WXX0 4024 aa7.05□□□□□ -1.28
CPSF3-202ENST00000460593 FRAS1Q86XX4 4008 aa7.04□□□□□ -1.28
CPSF3-202ENST00000460593 Q6ZR54 194 aa7.04□□□□□ -1.28
CPSF3-202ENST00000460593 SPINK6Q6UWN8 80 aa7.04□□□□□ -1.28
CPSF3-202ENST00000460593 LINC00313P59037 77 aa7.03□□□□□ -1.28
CPSF3-202ENST00000460593 Q5W150 140 aa7.03□□□□□ -1.28
CPSF3-202ENST00000460593 ASB16-AS1Q495Z4 193 aa7.02□□□□□ -1.29
CPSF3-202ENST00000460593 TP53AIP1Q9HCN2 124 aa7.02□□□□□ -1.29
CPSF3-202ENST00000460593 A0A1B0GVX0 72 aa7.01□□□□□ -1.29
CPSF3-202ENST00000460593 J3QKU1 62 aa7.01□□□□□ -1.29
CPSF3-202ENST00000460593 RETNLBQ9BQ08 111 aa7.01□□□□□ -1.29
CPSF3-202ENST00000460593 MRPL34Q9BQ48 92 aaKnown RBP7□□□□□ -1.29
CPSF3-202ENST00000460593 CDK2AP2O75956 126 aa6.99□□□□□ -1.29
CPSF3-202ENST00000460593 UBE2DNLQ8IWF7 75 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms