RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 LINC01600Q96MT4 127 aa6.7□□□□□ -1.34
SCN9A-205ENST00000454569 BAALC-AS2P0C853 105 aa6.69□□□□□ -1.34
SCN9A-205ENST00000454569 KRTAP19-4Q3LI73 84 aa6.69□□□□□ -1.34
SCN9A-205ENST00000454569 Q6ZRX8 168 aa6.69□□□□□ -1.34
SCN9A-205ENST00000454569 ORMDL1Q9P0S3 153 aa6.69□□□□□ -1.34
SCN9A-205ENST00000454569 PKHD1L1Q86WI1 4243 aa6.69□□□□□ -1.34
SCN9A-205ENST00000454569 IGLV7-43P04211 117 aa6.68□□□□□ -1.34
SCN9A-205ENST00000454569 RPL37AP61513 92 aaKnown RBP6.67□□□□□ -1.34
SCN9A-205ENST00000454569 UBE2AP49459 152 aa6.66□□□□□ -1.34
SCN9A-205ENST00000454569 Q6ZQY7 126 aa6.66□□□□□ -1.34
SCN9A-205ENST00000454569 ST20-AS1Q8NBB2 130 aa6.66□□□□□ -1.34
SCN9A-205ENST00000454569 PPDPFLQ8WWR9 84 aa6.66□□□□□ -1.34
SCN9A-205ENST00000454569 HIGD2AQ9BW72 106 aa6.66□□□□□ -1.34
SCN9A-205ENST00000454569 HERC2O95714 4834 aa6.65□□□□□ -1.34
SCN9A-205ENST00000454569 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.65□□□□□ -1.34
SCN9A-205ENST00000454569 DHRS4-AS1Q9P1J3 65 aa6.65□□□□□ -1.34
SCN9A-205ENST00000454569 H0Y9J4 135 aa6.65□□□□□ -1.35
SCN9A-205ENST00000454569 TMEM256-PLSCR3K7ERE1 68 aa6.65□□□□□ -1.35
SCN9A-205ENST00000454569 ZNF861PO60384 105 aa6.65□□□□□ -1.35
SCN9A-205ENST00000454569 INAFM2P0DMQ5 153 aa6.65□□□□□ -1.35
SCN9A-205ENST00000454569 KRTAP3-1Q9BYR8 98 aa6.65□□□□□ -1.35
SCN9A-205ENST00000454569 TEX49A0A1B0GTD5 131 aa6.64□□□□□ -1.35
SCN9A-205ENST00000454569 ANAPC13Q9BS18 74 aa6.64□□□□□ -1.35
SCN9A-205ENST00000454569 H3BQ85 93 aa6.63□□□□□ -1.35
SCN9A-205ENST00000454569 LINC01547P58512 204 aaPredicted RBP6.63□□□□□ -1.35
SCN9A-205ENST00000454569 LOC100996750A0A140TA64 210 aa6.62□□□□□ -1.35
SCN9A-205ENST00000454569 Q5VSD8 79 aa6.62□□□□□ -1.35
SCN9A-205ENST00000454569 KRTAP4-6Q9BYQ5 205 aa6.62□□□□□ -1.35
SCN9A-205ENST00000454569 KRTAP4-5Q9BYR2 181 aa6.62□□□□□ -1.35
SCN9A-205ENST00000454569 ANAPC11Q9NYG5 84 aa6.61□□□□□ -1.35
SCN9A-205ENST00000454569 ABCA13Q86UQ4 5058 aa6.61□□□□□ -1.35
SCN9A-205ENST00000454569 Q8N1X5 172 aa6.6□□□□□ -1.35
SCN9A-205ENST00000454569 DEFB105AQ8NG35 78 aa6.6□□□□□ -1.35
SCN9A-205ENST00000454569 JMJD7-PLA2G4BH0Y9G9 81 aa6.59□□□□□ -1.35
SCN9A-205ENST00000454569 SEC61GP60059 68 aa6.59□□□□□ -1.35
SCN9A-205ENST00000454569 Q8N377 158 aa6.59□□□□□ -1.35
SCN9A-205ENST00000454569 LRP1Q07954 4544 aaKnown RBP6.58□□□□□ -1.36
SCN9A-205ENST00000454569 LAMTOR3Q9UHA4 124 aa6.58□□□□□ -1.36
SCN9A-205ENST00000454569 C3orf22Q8N5N4 141 aa6.57□□□□□ -1.36
SCN9A-205ENST00000454569 OBSCN-AS1Q96MR7 158 aa6.57□□□□□ -1.36
SCN9A-205ENST00000454569 SPRR4Q96PI1 79 aa6.57□□□□□ -1.36
SCN9A-205ENST00000454569 FLG2Q5D862 2391 aaPredicted RBP6.57□□□□□ -1.36
SCN9A-205ENST00000454569 IGLV5-48A0A075B6I7 105 aa6.57□□□□□ -1.36
SCN9A-205ENST00000454569 KRTAP1-4P0C5Y4 121 aa6.57□□□□□ -1.36
SCN9A-205ENST00000454569 GAGE2AQ6NT46 116 aa6.57□□□□□ -1.36
SCN9A-205ENST00000454569 SMIM29Q86T20 159 aa6.57□□□□□ -1.36
SCN9A-205ENST00000454569 C14orf132Q9NPU4 83 aa6.57□□□□□ -1.36
SCN9A-205ENST00000454569 NDUFV3P56181 108 aaKnown RBP6.55□□□□□ -1.36
SCN9A-205ENST00000454569 SPINK6Q6UWN8 80 aa6.55□□□□□ -1.36
SCN9A-205ENST00000454569 FAT3Q8TDW7 4589 aa6.54□□□□□ -1.36
SCN9A-205ENST00000454569 RBM3P98179 157 aaKnown RBP6.54□□□□□ -1.36
SCN9A-205ENST00000454569 J3KT08 172 aa6.53□□□□□ -1.36
SCN9A-205ENST00000454569 MYCBP2O75592 4640 aa6.53□□□□□ -1.36
SCN9A-205ENST00000454569 SPRR1BP22528 89 aa6.52□□□□□ -1.36
SCN9A-205ENST00000454569 LINC00483Q53H64 154 aa6.52□□□□□ -1.36
SCN9A-205ENST00000454569 DSCR8Q96T75 97 aa6.52□□□□□ -1.36
SCN9A-205ENST00000454569 A0A087X002 238 aa6.52□□□□□ -1.37
SCN9A-205ENST00000454569 RPS28P62857 69 aaKnown RBP6.52□□□□□ -1.37
SCN9A-205ENST00000454569 A0A0G2JQZ4 141 aa6.51□□□□□ -1.37
SCN9A-205ENST00000454569 FAM240AA0A1B0GVK7 77 aa6.51□□□□□ -1.37
SCN9A-205ENST00000454569 Q6Q795 121 aa6.51□□□□□ -1.37
SCN9A-205ENST00000454569 LOC110117498A0A087WWA1 95 aa6.5□□□□□ -1.37
SCN9A-205ENST00000454569 KRTAP13-2Q52LG2 175 aa6.5□□□□□ -1.37
SCN9A-205ENST00000454569 F8WEM9 126 aa6.49□□□□□ -1.37
SCN9A-205ENST00000454569 CCKP06307 115 aa6.49□□□□□ -1.37
SCN9A-205ENST00000454569 ACYP1P07311 99 aa6.49□□□□□ -1.37
SCN9A-205ENST00000454569 TRBV7-4A0A0J9YYF1 115 aa6.48□□□□□ -1.37
SCN9A-205ENST00000454569 PDE6GP18545 87 aa6.48□□□□□ -1.37
SCN9A-205ENST00000454569 Q6ZQT0 140 aa6.48□□□□□ -1.37
SCN9A-205ENST00000454569 ZNF706Q9Y5V0 76 aaPredicted RBP6.48□□□□□ -1.37
SCN9A-205ENST00000454569 TNXBP22105 4242 aa6.48□□□□□ -1.37
SCN9A-205ENST00000454569 IGLV9-49A0A0B4J1Y8 123 aa6.48□□□□□ -1.37
SCN9A-205ENST00000454569 PRR26Q8N8Z3 221 aa6.48□□□□□ -1.37
SCN9A-205ENST00000454569 V9GYY9 64 aa6.47□□□□□ -1.37
SCN9A-205ENST00000454569 PCLOQ9Y6V0 5065 aa6.46□□□□□ -1.38
SCN9A-205ENST00000454569 CCDC179H3BU77 68 aa6.45□□□□□ -1.38
SCN9A-205ENST00000454569 MT-ATP8P03928 68 aa6.44□□□□□ -1.38
SCN9A-205ENST00000454569 MOBPQ13875 183 aa6.44□□□□□ -1.38
SCN9A-205ENST00000454569 PRO0628Q9UI54 55 aa6.44□□□□□ -1.38
SCN9A-205ENST00000454569 FAM229BQ4G0N7 80 aa6.44□□□□□ -1.38
SCN9A-205ENST00000454569 KRTAP19-1Q8IUB9 90 aa6.44□□□□□ -1.38
SCN9A-205ENST00000454569 IGLV8-61A0A075B6I0 122 aa6.43□□□□□ -1.38
SCN9A-205ENST00000454569 CRYGAP11844 174 aa6.43□□□□□ -1.38
SCN9A-205ENST00000454569 C9orf153Q5TBE3 101 aa6.43□□□□□ -1.38
SCN9A-205ENST00000454569 IGFL1Q6UW32 110 aa6.42□□□□□ -1.38
SCN9A-205ENST00000454569 LINC00846Q9NV44 126 aa6.42□□□□□ -1.38
SCN9A-205ENST00000454569 MT1HL1P0DM35 61 aa6.4□□□□□ -1.39
SCN9A-205ENST00000454569 KRTAP10-8P60410 259 aa6.4□□□□□ -1.39
SCN9A-205ENST00000454569 Q6JHZ5 121 aa6.4□□□□□ -1.39
SCN9A-205ENST00000454569 Q8NBF4 154 aa6.4□□□□□ -1.39
SCN9A-205ENST00000454569 A0A1W2PNM2 257 aa6.39□□□□□ -1.39
SCN9A-205ENST00000454569 HRCT1Q6UXD1 115 aa6.39□□□□□ -1.39
SCN9A-205ENST00000454569 TYMSOSQ8TAI1 123 aa6.39□□□□□ -1.39
SCN9A-205ENST00000454569 UBL5Q9BZL1 73 aa6.39□□□□□ -1.39
SCN9A-205ENST00000454569 LINC00643Q86TS7 51 aa6.38□□□□□ -1.39
SCN9A-205ENST00000454569 DMBT1Q9UGM3 2413 aaPredicted RBP6.37□□□□□ -1.39
SCN9A-205ENST00000454569 A0A1B0GW54 56 aa6.36□□□□□ -1.39
SCN9A-205ENST00000454569 SSBP3-AS1Q7Z2R9 100 aa6.36□□□□□ -1.39
SCN9A-205ENST00000454569 Q6ZVQ6 151 aa6.35□□□□□ -1.39
SCN9A-205ENST00000454569 KRTAP4-12Q9BQ66 201 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms