RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 Q8NDZ9 215 aa8.17□□□□□ -1.1
USP40-208ENST00000450966 KRTAP29-1A8MX34 341 aaPredicted RBP8.16□□□□□ -1.1
USP40-208ENST00000450966 TNP2Q05952 138 aa8.15□□□□□ -1.1
USP40-208ENST00000450966 H1FX-AS1Q4G0G2 97 aa8.14□□□□□ -1.11
USP40-208ENST00000450966 MGAM2Q2M2H8 2515 aa8.14□□□□□ -1.11
USP40-208ENST00000450966 HECTD1Q9ULT8 2610 aa8.13□□□□□ -1.11
USP40-208ENST00000450966 DNAH12Q6ZR08 3092 aa8.12□□□□□ -1.11
USP40-208ENST00000450966 Q6ZSA8 131 aa8.11□□□□□ -1.11
USP40-208ENST00000450966 USP24Q9UPU5 2620 aa8.11□□□□□ -1.11
USP40-208ENST00000450966 SPRR1BP22528 89 aa8.1□□□□□ -1.11
USP40-208ENST00000450966 PLAC8Q9NZF1 115 aa8.07□□□□□ -1.12
USP40-208ENST00000450966 HELZ2Q9BYK8 2649 aaKnown RBP8.04□□□□□ -1.12
USP40-208ENST00000450966 KRTAP26-1Q6PEX3 210 aa8.04□□□□□ -1.12
USP40-208ENST00000450966 CEP350Q5VT06 3117 aa8.02□□□□□ -1.13
USP40-208ENST00000450966 PRRC2CQ9Y520 2896 aaKnown RBP8.01□□□□□ -1.13
USP40-208ENST00000450966 M0R2T5 61 aa7.99□□□□□ -1.13
USP40-208ENST00000450966 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.98□□□□□ -1.13
USP40-208ENST00000450966 C20orf166-AS1Q96NR2 134 aa7.97□□□□□ -1.13
USP40-208ENST00000450966 CHD7Q9P2D1 2997 aa7.96□□□□□ -1.13
USP40-208ENST00000450966 A8MUU9 505 aa7.96□□□□□ -1.13
USP40-208ENST00000450966 PANO1I0J062 215 aa7.96□□□□□ -1.14
USP40-208ENST00000450966 CHD9Q3L8U1 2897 aa7.91□□□□□ -1.14
USP40-208ENST00000450966 MAST4O15021 2626 aa7.91□□□□□ -1.14
USP40-208ENST00000450966 ATRQ13535 2644 aa7.9□□□□□ -1.15
USP40-208ENST00000450966 Q5VSD8 79 aa7.89□□□□□ -1.15
USP40-208ENST00000450966 UTRNP46939 3433 aa7.89□□□□□ -1.15
USP40-208ENST00000450966 FLNAP21333 2647 aaKnown RBP7.89□□□□□ -1.15
USP40-208ENST00000450966 S4R3F8 94 aa7.87□□□□□ -1.15
USP40-208ENST00000450966 ITPR3Q14573 2671 aa7.85□□□□□ -1.15
USP40-208ENST00000450966 KRTAP11-1Q8IUC1 163 aa7.85□□□□□ -1.15
USP40-208ENST00000450966 KRTAP4-16G5E9R7 235 aaPredicted RBP7.84□□□□□ -1.15
USP40-208ENST00000450966 NOTCH2NLQ7Z3S9 236 aa7.84□□□□□ -1.16
USP40-208ENST00000450966 HTTP42858 3142 aa7.82□□□□□ -1.16
USP40-208ENST00000450966 TRANK1O15050 2925 aa7.79□□□□□ -1.16
USP40-208ENST00000450966 PLAC4Q8WY50 150 aa7.77□□□□□ -1.17
USP40-208ENST00000450966 BPTFQ12830 3046 aa7.76□□□□□ -1.17
USP40-208ENST00000450966 STAB1Q9NY15 2570 aa7.75□□□□□ -1.17
USP40-208ENST00000450966 KRTAP10-1P60331 282 aa7.75□□□□□ -1.17
USP40-208ENST00000450966 R4GN34 69 aa7.74□□□□□ -1.17
USP40-208ENST00000450966 ZNF292O60281 2723 aa7.73□□□□□ -1.17
USP40-208ENST00000450966 CFAP46Q8IYW2 2715 aa7.72□□□□□ -1.17
USP40-208ENST00000450966 KRTAP1-5Q9BYS1 174 aa7.71□□□□□ -1.18
USP40-208ENST00000450966 SETXQ7Z333 2677 aaKnown RBP7.7□□□□□ -1.18
USP40-208ENST00000450966 C5orf42Q9H799 3197 aa7.7□□□□□ -1.18
USP40-208ENST00000450966 BAHCC1Q9P281 2608 aa7.69□□□□□ -1.18
USP40-208ENST00000450966 RANBP2P49792 3224 aaKnown RBP7.69□□□□□ -1.18
USP40-208ENST00000450966 KRTAP10-2P60368 255 aa7.67□□□□□ -1.18
USP40-208ENST00000450966 PCNTO95613 3336 aa7.64□□□□□ -1.19
USP40-208ENST00000450966 RPS29P62273 56 aaKnown RBP7.63□□□□□ -1.19
USP40-208ENST00000450966 CENPEQ02224 2701 aa7.61□□□□□ -1.19
USP40-208ENST00000450966 M0QZ58 72 aa7.61□□□□□ -1.19
USP40-208ENST00000450966 FLG2Q5D862 2391 aaPredicted RBP7.59□□□□□ -1.19
USP40-208ENST00000450966 UNC79Q9P2D8 2635 aa7.54□□□□□ -1.2
USP40-208ENST00000450966 P0C880 135 aa7.5□□□□□ -1.21
USP40-208ENST00000450966 MGAQ8IWI9 3026 aa7.5□□□□□ -1.21
USP40-208ENST00000450966 Q6ZRN7 208 aaPredicted RBP7.5□□□□□ -1.21
USP40-208ENST00000450966 TEP1Q99973 2627 aaKnown RBP7.48□□□□□ -1.21
USP40-208ENST00000450966 LAMA3Q16787 3333 aa7.48□□□□□ -1.21
USP40-208ENST00000450966 NBEAL1Q6ZS30 2694 aa7.47□□□□□ -1.21
USP40-208ENST00000450966 MKI67P46013 3256 aaKnown RBP7.45□□□□□ -1.22
USP40-208ENST00000450966 TEX15Q9BXT5 2789 aa7.44□□□□□ -1.22
USP40-208ENST00000450966 PP632Q6XCG6 107 aa7.44□□□□□ -1.22
USP40-208ENST00000450966 H0YAA0 97 aa7.44□□□□□ -1.22
USP40-208ENST00000450966 C10orf95Q9H7T3 257 aa7.43□□□□□ -1.22
USP40-208ENST00000450966 AKAP13Q12802 2813 aa7.43□□□□□ -1.22
USP40-208ENST00000450966 IGSF10Q6WRI0 2623 aa7.41□□□□□ -1.22
USP40-208ENST00000450966 COL6A5A8TX70 2615 aa7.4□□□□□ -1.23
USP40-208ENST00000450966 CHD6Q8TD26 2715 aa7.39□□□□□ -1.23
USP40-208ENST00000450966 DMBT1Q9UGM3 2413 aaPredicted RBP7.38□□□□□ -1.23
USP40-208ENST00000450966 KMT2BQ9UMN6 2715 aaPredicted RBP7.37□□□□□ -1.23
USP40-208ENST00000450966 DSPP15924 2871 aaKnown RBP7.35□□□□□ -1.23
USP40-208ENST00000450966 WDFY4Q6ZS81 3184 aa7.33□□□□□ -1.24
USP40-208ENST00000450966 CFAP54Q96N23 3096 aa7.33□□□□□ -1.24
USP40-208ENST00000450966 KRTAP7-1Q8IUC3 87 aa7.32□□□□□ -1.24
USP40-208ENST00000450966 PRUNE2Q8WUY3 3088 aa7.3□□□□□ -1.24
USP40-208ENST00000450966 BRCA2P51587 3418 aa7.3□□□□□ -1.24
USP40-208ENST00000450966 A0A0C4DFX4 3053 aa7.29□□□□□ -1.24
USP40-208ENST00000450966 LAMA2P24043 3122 aaKnown RBP7.29□□□□□ -1.24
USP40-208ENST00000450966 NOTCH1P46531 2555 aa7.27□□□□□ -1.25
USP40-208ENST00000450966 KRTAP13-1Q8IUC0 172 aa7.26□□□□□ -1.25
USP40-208ENST00000450966 STAB2Q8WWQ8 2551 aa7.24□□□□□ -1.25
USP40-208ENST00000450966 TNP1P09430 55 aa7.24□□□□□ -1.25
USP40-208ENST00000450966 GCN1Q92616 2671 aaKnown RBP7.23□□□□□ -1.25
USP40-208ENST00000450966 TRIOO75962 3097 aa7.23□□□□□ -1.25
USP40-208ENST00000450966 NSD1Q96L73 2696 aaPredicted RBP7.18□□□□□ -1.26
USP40-208ENST00000450966 UNC80Q8N2C7 3258 aa7.18□□□□□ -1.26
USP40-208ENST00000450966 VPS13AQ96RL7 3174 aa7.17□□□□□ -1.26
USP40-208ENST00000450966 ITPR2Q14571 2701 aa7.17□□□□□ -1.26
USP40-208ENST00000450966 MAP1AP78559 2803 aaPredicted RBP7.16□□□□□ -1.26
USP40-208ENST00000450966 KRTAP13-2Q52LG2 175 aa7.16□□□□□ -1.26
USP40-208ENST00000450966 UBR5O95071 2799 aaPredicted RBP7.15□□□□□ -1.27
USP40-208ENST00000450966 FLNCQ14315 2725 aa7.14□□□□□ -1.27
USP40-208ENST00000450966 KRTAP10-8P60410 259 aa7.09□□□□□ -1.27
USP40-208ENST00000450966 XIRP2A4UGR9 3374 aa7.09□□□□□ -1.27
USP40-208ENST00000450966 FRYQ5TBA9 3013 aa7.09□□□□□ -1.27
USP40-208ENST00000450966 CDH23Q9H251 3354 aa7.07□□□□□ -1.28
USP40-208ENST00000450966 ITPR1Q14643 2758 aa7.05□□□□□ -1.28
USP40-208ENST00000450966 NBEAL2Q6ZNJ1 2754 aa7.04□□□□□ -1.28
USP40-208ENST00000450966 TPRXLQ17RH7 258 aa7.01□□□□□ -1.29
USP40-208ENST00000450966 ATMQ13315 3056 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms