RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 NMUP48645 174 aa3.97□□□□□ -1.77
LIMCH1-204ENST00000446625 CD164Q04900 197 aa3.97□□□□□ -1.77
LIMCH1-204ENST00000446625 KRTAP19-6Q3LI70 58 aa3.97□□□□□ -1.77
LIMCH1-204ENST00000446625 SLC25A34Q6PIV7 304 aa3.97□□□□□ -1.77
LIMCH1-204ENST00000446625 MIEN1Q9BRT3 115 aa3.97□□□□□ -1.77
LIMCH1-204ENST00000446625 UQCR10Q9UDW1 63 aa3.97□□□□□ -1.77
LIMCH1-204ENST00000446625 J3QQQ9 107 aa3.96□□□□□ -1.78
LIMCH1-204ENST00000446625 Q5XG85 94 aa3.96□□□□□ -1.78
LIMCH1-204ENST00000446625 C2orf91Q6ZV80 131 aa3.96□□□□□ -1.78
LIMCH1-204ENST00000446625 LINC00846Q9NV44 126 aa3.96□□□□□ -1.78
LIMCH1-204ENST00000446625 TRBV10-2A0A0K0K1G8 114 aa3.95□□□□□ -1.78
LIMCH1-204ENST00000446625 MYMXA0A1B0GTQ4 84 aa3.95□□□□□ -1.78
LIMCH1-204ENST00000446625 PCP4L1A6NKN8 68 aa3.95□□□□□ -1.78
LIMCH1-204ENST00000446625 KRTAP10-10P60014 251 aa3.95□□□□□ -1.78
LIMCH1-204ENST00000446625 HERV-K104P63124 156 aa3.95□□□□□ -1.78
LIMCH1-204ENST00000446625 S100A7L2Q5SY68 101 aa3.95□□□□□ -1.78
LIMCH1-204ENST00000446625 KRTAP4-7Q9BYR0 210 aa3.95□□□□□ -1.78
LIMCH1-204ENST00000446625 TRAV23DV6A0A075B6W5 121 aa3.94□□□□□ -1.78
LIMCH1-204ENST00000446625 ZNF815PA8K554 130 aa3.94□□□□□ -1.78
LIMCH1-204ENST00000446625 ZNF73O43830 326 aaPredicted RBP3.94□□□□□ -1.78
LIMCH1-204ENST00000446625 LGALS3P17931 250 aaKnown RBP3.94□□□□□ -1.78
LIMCH1-204ENST00000446625 SOSTDC1Q6X4U4 206 aa3.94□□□□□ -1.78
LIMCH1-204ENST00000446625 ATP11AUNQ6ZP68 121 aa3.94□□□□□ -1.78
LIMCH1-204ENST00000446625 SMIM29Q86T20 159 aa3.94□□□□□ -1.78
LIMCH1-204ENST00000446625 LAMTOR3Q9UHA4 124 aa3.94□□□□□ -1.78
LIMCH1-204ENST00000446625 MUC12Q9UKN1 5478 aa3.94□□□□□ -1.78
LIMCH1-204ENST00000446625 LOC107984156A0A0G2JMH3 177 aa3.93□□□□□ -1.78
LIMCH1-204ENST00000446625 LINC00587B1AMM8 73 aa3.93□□□□□ -1.78
LIMCH1-204ENST00000446625 ARL17AQ8IVW1 177 aa3.93□□□□□ -1.78
LIMCH1-204ENST00000446625 SPANXB1Q9NS25 103 aaPredicted RBP3.93□□□□□ -1.78
LIMCH1-204ENST00000446625 HIGD1BQ9P298 99 aa3.93□□□□□ -1.78
LIMCH1-204ENST00000446625 A0A0G2JQZ4 141 aa3.92□□□□□ -1.78
LIMCH1-204ENST00000446625 A0A0J9YXY3 114 aa3.92□□□□□ -1.78
LIMCH1-204ENST00000446625 Q1RN00 199 aa3.92□□□□□ -1.78
LIMCH1-204ENST00000446625 LITAFQ99732 161 aa3.92□□□□□ -1.78
LIMCH1-204ENST00000446625 ADAMTSL4-AS1Q5T5F5 129 aa3.91□□□□□ -1.78
LIMCH1-204ENST00000446625 TIMM17BO60830 172 aa3.9□□□□□ -1.79
LIMCH1-204ENST00000446625 HSD52Q0P140 79 aa3.9□□□□□ -1.79
LIMCH1-204ENST00000446625 TAL2Q16559 108 aa3.9□□□□□ -1.79
LIMCH1-204ENST00000446625 SCGB1D4Q6XE38 83 aa3.9□□□□□ -1.79
LIMCH1-204ENST00000446625 Q75L30 129 aa3.9□□□□□ -1.79
LIMCH1-204ENST00000446625 OR13C6PQ8NH95 151 aa3.9□□□□□ -1.79
LIMCH1-204ENST00000446625 DEFB105AQ8NG35 78 aa3.89□□□□□ -1.79
LIMCH1-204ENST00000446625 OBSCN-AS1Q96MR7 158 aa3.89□□□□□ -1.79
LIMCH1-204ENST00000446625 SPANXDQ9BXN6 97 aa3.89□□□□□ -1.79
LIMCH1-204ENST00000446625 SNHG12Q9BXW3 62 aa3.89□□□□□ -1.79
LIMCH1-204ENST00000446625 KRTAP4-9Q9BYQ8 210 aa3.89□□□□□ -1.79
LIMCH1-204ENST00000446625 SPANXCQ9NY87 97 aa3.89□□□□□ -1.79
LIMCH1-204ENST00000446625 NDUFC2O95298 119 aa3.88□□□□□ -1.79
LIMCH1-204ENST00000446625 HINT1P49773 126 aaPredicted RBP3.88□□□□□ -1.79
LIMCH1-204ENST00000446625 KRTAP20-1Q3LI63 56 aa3.88□□□□□ -1.79
LIMCH1-204ENST00000446625 BVES-AS1Q5T3Y7 98 aa3.88□□□□□ -1.79
LIMCH1-204ENST00000446625 CEND1Q8N111 149 aa3.88□□□□□ -1.79
LIMCH1-204ENST00000446625 HIST1H4GQ99525 98 aa3.88□□□□□ -1.79
LIMCH1-204ENST00000446625 DHRS4-AS1Q9P1J3 65 aa3.88□□□□□ -1.79
LIMCH1-204ENST00000446625 TRBV20-1A0A075B6N2 111 aa3.87□□□□□ -1.79
LIMCH1-204ENST00000446625 M0R143 59 aa3.87□□□□□ -1.79
LIMCH1-204ENST00000446625 FXYD2P54710 66 aa3.87□□□□□ -1.79
LIMCH1-204ENST00000446625 Q6ZVH6 145 aa3.87□□□□□ -1.79
LIMCH1-204ENST00000446625 TEX49A0A1B0GTD5 131 aa3.86□□□□□ -1.79
LIMCH1-204ENST00000446625 TCL1BO95988 128 aa3.86□□□□□ -1.79
LIMCH1-204ENST00000446625 IFITM1P13164 125 aa3.86□□□□□ -1.79
LIMCH1-204ENST00000446625 MUSTN1Q8IVN3 82 aa3.86□□□□□ -1.79
LIMCH1-204ENST00000446625 LINC00308Q8TCZ7 52 aa3.86□□□□□ -1.79
LIMCH1-204ENST00000446625 A0A1B0GWB2 263 aa3.85□□□□□ -1.79
LIMCH1-204ENST00000446625 COX7BP24311 80 aa3.85□□□□□ -1.79
LIMCH1-204ENST00000446625 BATFQ16520 125 aa3.85□□□□□ -1.79
LIMCH1-204ENST00000446625 C6orf99Q4VX62 202 aa3.85□□□□□ -1.79
LIMCH1-204ENST00000446625 C20orf166-AS1Q96NR2 134 aa3.85□□□□□ -1.79
LIMCH1-204ENST00000446625 FAM236DA0A1B0GTK5 79 aa3.84□□□□□ -1.79
LIMCH1-204ENST00000446625 A4D1N5 150 aa3.84□□□□□ -1.79
LIMCH1-204ENST00000446625 FAM236CP0DP71 79 aa3.84□□□□□ -1.79
LIMCH1-204ENST00000446625 CBY1Q9Y3M2 126 aa3.84□□□□□ -1.79
LIMCH1-204ENST00000446625 A6NDN8 102 aa3.83□□□□□ -1.8
LIMCH1-204ENST00000446625 ELOF1P60002 83 aaKnown RBP3.83□□□□□ -1.8
LIMCH1-204ENST00000446625 COL5A1-AS1Q5SY13 56 aa3.83□□□□□ -1.8
LIMCH1-204ENST00000446625 COPS9Q8WXC6 57 aa3.83□□□□□ -1.8
LIMCH1-204ENST00000446625 Q96NJ1 140 aa3.83□□□□□ -1.8
LIMCH1-204ENST00000446625 NHP2Q9NX24 153 aaKnown RBP3.83□□□□□ -1.8
LIMCH1-204ENST00000446625 A0A0B4J2C4 111 aa3.82□□□□□ -1.8
LIMCH1-204ENST00000446625 K7ERJ3 54 aa3.82□□□□□ -1.8
LIMCH1-204ENST00000446625 TAX1BP3O14907 124 aa3.82□□□□□ -1.8
LIMCH1-204ENST00000446625 IGLV5-48A0A075B6I7 105 aa3.81□□□□□ -1.8
LIMCH1-204ENST00000446625 A8MUU9 505 aa3.8□□□□□ -1.8
LIMCH1-204ENST00000446625 RAB37Q96AX2 223 aa3.8□□□□□ -1.8
LIMCH1-204ENST00000446625 PRO1854Q9UHT4 67 aa3.8□□□□□ -1.8
LIMCH1-204ENST00000446625 IGFL1Q6UW32 110 aa3.79□□□□□ -1.8
LIMCH1-204ENST00000446625 C9orf118A6NHY6 69 aa3.78□□□□□ -1.8
LIMCH1-204ENST00000446625 KRTAP16-1A8MUX0 517 aa3.78□□□□□ -1.8
LIMCH1-204ENST00000446625 MPLKIPQ8TAP9 179 aa3.78□□□□□ -1.8
LIMCH1-204ENST00000446625 NAA38Q9BRA0 125 aaKnown RBP3.78□□□□□ -1.8
LIMCH1-204ENST00000446625 TRAV13-2A0A0B4J235 113 aa3.77□□□□□ -1.81
LIMCH1-204ENST00000446625 TRBV7-7A0A0K0K1E9 115 aa3.77□□□□□ -1.81
LIMCH1-204ENST00000446625 A0A1B0GV90 55 aa3.77□□□□□ -1.81
LIMCH1-204ENST00000446625 H3BUT2 72 aa3.77□□□□□ -1.81
LIMCH1-204ENST00000446625 HRES1P13985 223 aa3.77□□□□□ -1.81
LIMCH1-204ENST00000446625 LCE5AQ5TCM9 118 aa3.77□□□□□ -1.81
LIMCH1-204ENST00000446625 KRTAP4-11Q9BYQ6 195 aa3.77□□□□□ -1.81
LIMCH1-204ENST00000446625 KRTAP4-2Q9BYR5 136 aa3.77□□□□□ -1.81
LIMCH1-204ENST00000446625 MDN1Q9NU22 5596 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 106.6 ms