RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 CHD9Q3L8U1 2897 aa10.46□□□□□ -0.74
PTPRF-209ENST00000438120 STAB1Q9NY15 2570 aa10.46□□□□□ -0.74
PTPRF-209ENST00000438120 HTTP42858 3142 aa10.42□□□□□ -0.74
PTPRF-209ENST00000438120 TEP1Q99973 2627 aaKnown RBP10.42□□□□□ -0.74
PTPRF-209ENST00000438120 TEX15Q9BXT5 2789 aa10.42□□□□□ -0.74
PTPRF-209ENST00000438120 S4R3F8 94 aa10.42□□□□□ -0.74
PTPRF-209ENST00000438120 Q5W150 140 aa10.41□□□□□ -0.74
PTPRF-209ENST00000438120 BRCA2P51587 3418 aa10.4□□□□□ -0.74
PTPRF-209ENST00000438120 CYSTM1Q9H1C7 97 aa10.39□□□□□ -0.75
PTPRF-209ENST00000438120 CSAG1Q6PB30 78 aa10.39□□□□□ -0.75
PTPRF-209ENST00000438120 LUZP6Q538Z0 58 aa10.38□□□□□ -0.75
PTPRF-209ENST00000438120 LINC00472Q9H8W2 130 aa10.38□□□□□ -0.75
PTPRF-209ENST00000438120 SPINK7P58062 85 aa10.37□□□□□ -0.75
PTPRF-209ENST00000438120 KRTAP10-2P60368 255 aa10.37□□□□□ -0.75
PTPRF-209ENST00000438120 Q5VSD8 79 aa10.36□□□□□ -0.75
PTPRF-209ENST00000438120 KRTAP10-1P60331 282 aa10.36□□□□□ -0.75
PTPRF-209ENST00000438120 Q75L30 129 aa10.35□□□□□ -0.75
PTPRF-209ENST00000438120 A0A0C4DFX4 3053 aa10.33□□□□□ -0.76
PTPRF-209ENST00000438120 KRTAP26-1Q6PEX3 210 aa10.33□□□□□ -0.76
PTPRF-209ENST00000438120 WDFY4Q6ZS81 3184 aa10.32□□□□□ -0.76
PTPRF-209ENST00000438120 SPRR1BP22528 89 aa10.32□□□□□ -0.76
PTPRF-209ENST00000438120 LAMA2P24043 3122 aaKnown RBP10.32□□□□□ -0.76
PTPRF-209ENST00000438120 Q5XG85 94 aa10.32□□□□□ -0.76
PTPRF-209ENST00000438120 SETXQ7Z333 2677 aaKnown RBP10.31□□□□□ -0.76
PTPRF-209ENST00000438120 LINC01558Q9Y6Z2 57 aa10.31□□□□□ -0.76
PTPRF-209ENST00000438120 NBEAL1Q6ZS30 2694 aa10.29□□□□□ -0.76
PTPRF-209ENST00000438120 PRAC1Q96KF2 57 aa10.28□□□□□ -0.76
PTPRF-209ENST00000438120 LINC00483Q53H64 154 aa10.27□□□□□ -0.77
PTPRF-209ENST00000438120 DMAC1Q96GE9 116 aa10.27□□□□□ -0.77
PTPRF-209ENST00000438120 PANO1I0J062 215 aa10.25□□□□□ -0.77
PTPRF-209ENST00000438120 R4GN34 69 aa10.25□□□□□ -0.77
PTPRF-209ENST00000438120 FP248Q71RG6 208 aaPredicted RBP10.24□□□□□ -0.77
PTPRF-209ENST00000438120 PRUNE2Q8WUY3 3088 aa10.24□□□□□ -0.77
PTPRF-209ENST00000438120 XIRP2A4UGR9 3374 aa10.23□□□□□ -0.77
PTPRF-209ENST00000438120 LCE6AA0A183 80 aa10.22□□□□□ -0.77
PTPRF-209ENST00000438120 GCN1Q92616 2671 aaKnown RBP10.22□□□□□ -0.77
PTPRF-209ENST00000438120 COL6A5A8TX70 2615 aa10.21□□□□□ -0.78
PTPRF-209ENST00000438120 SEC61BP60468 96 aaKnown RBP10.2□□□□□ -0.78
PTPRF-209ENST00000438120 Q5VV11 94 aa10.2□□□□□ -0.78
PTPRF-209ENST00000438120 TRIOO75962 3097 aa10.2□□□□□ -0.78
PTPRF-209ENST00000438120 FLG2Q5D862 2391 aaPredicted RBP10.18□□□□□ -0.78
PTPRF-209ENST00000438120 UNC80Q8N2C7 3258 aa10.17□□□□□ -0.78
PTPRF-209ENST00000438120 UNC79Q9P2D8 2635 aa10.17□□□□□ -0.78
PTPRF-209ENST00000438120 ZNF292O60281 2723 aa10.14□□□□□ -0.79
PTPRF-209ENST00000438120 NOTCH1P46531 2555 aa10.14□□□□□ -0.79
PTPRF-209ENST00000438120 MAP1AP78559 2803 aaPredicted RBP10.13□□□□□ -0.79
PTPRF-209ENST00000438120 TRANK1O15050 2925 aa10.13□□□□□ -0.79
PTPRF-209ENST00000438120 DSPP15924 2871 aaKnown RBP10.11□□□□□ -0.79
PTPRF-209ENST00000438120 NBEAL2Q6ZNJ1 2754 aa10.11□□□□□ -0.79
PTPRF-209ENST00000438120 A0A087X002 238 aa10.09□□□□□ -0.79
PTPRF-209ENST00000438120 M0QZ58 72 aa10.09□□□□□ -0.79
PTPRF-209ENST00000438120 OXTP01178 125 aa10.08□□□□□ -0.8
PTPRF-209ENST00000438120 KRTAP4-16G5E9R7 235 aaPredicted RBP10.06□□□□□ -0.8
PTPRF-209ENST00000438120 FREM2Q5SZK8 3169 aa10.04□□□□□ -0.8
PTPRF-209ENST00000438120 Q6ZR54 194 aa10.04□□□□□ -0.8
PTPRF-209ENST00000438120 RPL37P61927 97 aaKnown RBP10.03□□□□□ -0.8
PTPRF-209ENST00000438120 FRYQ5TBA9 3013 aa10.02□□□□□ -0.81
PTPRF-209ENST00000438120 SPATA8Q6RVD6 105 aa10.02□□□□□ -0.81
PTPRF-209ENST00000438120 CELSR3Q9NYQ7 3312 aa10□□□□□ -0.81
PTPRF-209ENST00000438120 H1FX-AS1Q4G0G2 97 aa10□□□□□ -0.81
PTPRF-209ENST00000438120 NOTCH2NLQ7Z3S9 236 aa10□□□□□ -0.81
PTPRF-209ENST00000438120 ADM2Q7Z4H4 148 aa10□□□□□ -0.81
PTPRF-209ENST00000438120 VPS13AQ96RL7 3174 aa10□□□□□ -0.81
PTPRF-209ENST00000438120 CDH23Q9H251 3354 aa9.99□□□□□ -0.81
PTPRF-209ENST00000438120 KRTAP11-1Q8IUC1 163 aa9.98□□□□□ -0.81
PTPRF-209ENST00000438120 UBR5O95071 2799 aaPredicted RBP9.98□□□□□ -0.81
PTPRF-209ENST00000438120 DMBT1Q9UGM3 2413 aaPredicted RBP9.97□□□□□ -0.81
PTPRF-209ENST00000438120 IGSF10Q6WRI0 2623 aa9.95□□□□□ -0.82
PTPRF-209ENST00000438120 ROMO1P60602 79 aa9.95□□□□□ -0.82
PTPRF-209ENST00000438120 KRTAP29-1A8MX34 341 aaPredicted RBP9.94□□□□□ -0.82
PTPRF-209ENST00000438120 BAHCC1Q9P281 2608 aa9.93□□□□□ -0.82
PTPRF-209ENST00000438120 STAB2Q8WWQ8 2551 aa9.9□□□□□ -0.83
PTPRF-209ENST00000438120 H3BS24 57 aa9.88□□□□□ -0.83
PTPRF-209ENST00000438120 PLAC4Q8WY50 150 aa9.86□□□□□ -0.83
PTPRF-209ENST00000438120 Q6ZRN7 208 aaPredicted RBP9.82□□□□□ -0.84
PTPRF-209ENST00000438120 KRTAP7-1Q8IUC3 87 aa9.82□□□□□ -0.84
PTPRF-209ENST00000438120 A0A0A0MQY5 61 aa9.79□□□□□ -0.84
PTPRF-209ENST00000438120 TACC2O95359 2948 aa9.78□□□□□ -0.84
PTPRF-209ENST00000438120 ITPR2Q14571 2701 aa9.77□□□□□ -0.85
PTPRF-209ENST00000438120 KALRNO60229 2985 aa9.77□□□□□ -0.85
PTPRF-209ENST00000438120 NSD1Q96L73 2696 aaPredicted RBP9.77□□□□□ -0.85
PTPRF-209ENST00000438120 ITPR1Q14643 2758 aa9.75□□□□□ -0.85
PTPRF-209ENST00000438120 REV3LO60673 3130 aa9.75□□□□□ -0.85
PTPRF-209ENST00000438120 DMXL2Q8TDJ6 3036 aa9.74□□□□□ -0.85
PTPRF-209ENST00000438120 KRTAP13-2Q52LG2 175 aa9.73□□□□□ -0.85
PTPRF-209ENST00000438120 A8MU10 97 aa9.72□□□□□ -0.85
PTPRF-209ENST00000438120 VCANP13611 3396 aa9.72□□□□□ -0.85
PTPRF-209ENST00000438120 DNAH14Q0VDD8 3507 aa9.72□□□□□ -0.85
PTPRF-209ENST00000438120 SZT2Q5T011 3432 aa9.71□□□□□ -0.85
PTPRF-209ENST00000438120 ATMQ13315 3056 aa9.7□□□□□ -0.86
PTPRF-209ENST00000438120 ASB16-AS1Q495Z4 193 aa9.66□□□□□ -0.86
PTPRF-209ENST00000438120 A8MUU9 505 aa9.65□□□□□ -0.86
PTPRF-209ENST00000438120 COL12A1Q99715 3063 aa9.64□□□□□ -0.87
PTPRF-209ENST00000438120 LAMA1P25391 3075 aa9.63□□□□□ -0.87
PTPRF-209ENST00000438120 RPS29P62273 56 aaKnown RBP9.62□□□□□ -0.87
PTPRF-209ENST00000438120 ASH1LQ9NR48 2969 aaKnown RBP9.62□□□□□ -0.87
PTPRF-209ENST00000438120 COL6A3P12111 3177 aa9.61□□□□□ -0.87
PTPRF-209ENST00000438120 KRTAP13-1Q8IUC0 172 aa9.6□□□□□ -0.87
PTPRF-209ENST00000438120 UTP20O75691 2785 aaKnown RBP9.6□□□□□ -0.87
PTPRF-209ENST00000438120 CRYBG3Q68DQ2 2970 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms