RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 LINC01547P58512 204 aaPredicted RBP13.14□□□□□ -0.31
PTPRF-207ENST00000436724 Q6ZVQ6 151 aa13.14□□□□□ -0.31
PTPRF-207ENST00000436724 DNAH8Q96JB1 4490 aa13.14□□□□□ -0.31
PTPRF-207ENST00000436724 EPM2AB3EWF7 344 aa13.14□□□□□ -0.31
PTPRF-207ENST00000436724 Q8N377 158 aa13.14□□□□□ -0.31
PTPRF-207ENST00000436724 PKD1P98161 4303 aa13.14□□□□□ -0.31
PTPRF-207ENST00000436724 HIGD2AQ9BW72 106 aa13.11□□□□□ -0.31
PTPRF-207ENST00000436724 CYSTM1Q9H1C7 97 aa13.1□□□□□ -0.31
PTPRF-207ENST00000436724 HAMPP81172 84 aa13.09□□□□□ -0.31
PTPRF-207ENST00000436724 SMIM20Q8N5G0 67 aa13.08□□□□□ -0.31
PTPRF-207ENST00000436724 PLAC8Q9NZF1 115 aa13.08□□□□□ -0.31
PTPRF-207ENST00000436724 FAM30AQ9NZY2 134 aa13.07□□□□□ -0.32
PTPRF-207ENST00000436724 IGLV5-48A0A075B6I7 105 aa13.06□□□□□ -0.32
PTPRF-207ENST00000436724 LCE6AA0A183 80 aa13.05□□□□□ -0.32
PTPRF-207ENST00000436724 UBE2AP49459 152 aa13.04□□□□□ -0.32
PTPRF-207ENST00000436724 BCE1O60756 84 aa13.04□□□□□ -0.32
PTPRF-207ENST00000436724 CXCL6P80162 114 aa13.03□□□□□ -0.32
PTPRF-207ENST00000436724 H0Y9J4 135 aa13.01□□□□□ -0.33
PTPRF-207ENST00000436724 KRTAP10-1P60331 282 aa13□□□□□ -0.33
PTPRF-207ENST00000436724 PSORS1C2Q9UIG4 136 aa13□□□□□ -0.33
PTPRF-207ENST00000436724 KRTAP13-1Q8IUC0 172 aa13□□□□□ -0.33
PTPRF-207ENST00000436724 KMT2CQ8NEZ4 4911 aaKnown RBP12.99□□□□□ -0.33
PTPRF-207ENST00000436724 CIRBP-AS1Q8TBR5 109 aa12.98□□□□□ -0.33
PTPRF-207ENST00000436724 SCXQ7RTU7 201 aa12.97□□□□□ -0.33
PTPRF-207ENST00000436724 SMIM29Q86T20 159 aa12.97□□□□□ -0.33
PTPRF-207ENST00000436724 PKHD1P08F94 4074 aa12.96□□□□□ -0.34
PTPRF-207ENST00000436724 C1orf137Q5JT78 98 aa12.94□□□□□ -0.34
PTPRF-207ENST00000436724 Q6ZSA8 131 aa12.93□□□□□ -0.34
PTPRF-207ENST00000436724 RYR2Q92736 4967 aa12.92□□□□□ -0.34
PTPRF-207ENST00000436724 TRAV7A0A075B6U4 112 aa12.9□□□□□ -0.34
PTPRF-207ENST00000436724 TMEM258P61165 79 aa12.89□□□□□ -0.35
PTPRF-207ENST00000436724 LRP1BQ9NZR2 4599 aa12.88□□□□□ -0.35
PTPRF-207ENST00000436724 A0A0G2JQZ4 141 aa12.87□□□□□ -0.35
PTPRF-207ENST00000436724 NREPQ16612 68 aa12.87□□□□□ -0.35
PTPRF-207ENST00000436724 C20orf197Q8N268 126 aa12.87□□□□□ -0.35
PTPRF-207ENST00000436724 F8WEM9 126 aa12.85□□□□□ -0.35
PTPRF-207ENST00000436724 SPRR1BP22528 89 aa12.84□□□□□ -0.35
PTPRF-207ENST00000436724 LINC00336Q6ZUF6 198 aa12.84□□□□□ -0.35
PTPRF-207ENST00000436724 A0A1W2PNM2 257 aa12.83□□□□□ -0.36
PTPRF-207ENST00000436724 ZNF861PO60384 105 aa12.83□□□□□ -0.36
PTPRF-207ENST00000436724 Q8N9L7 120 aa12.83□□□□□ -0.36
PTPRF-207ENST00000436724 RPS28P62857 69 aaKnown RBP12.83□□□□□ -0.36
PTPRF-207ENST00000436724 IGKV4-1P06312 121 aa12.81□□□□□ -0.36
PTPRF-207ENST00000436724 J3KT08 172 aa12.81□□□□□ -0.36
PTPRF-207ENST00000436724 IGLV7-43P04211 117 aa12.8□□□□□ -0.36
PTPRF-207ENST00000436724 IGFL1Q6UW32 110 aa12.8□□□□□ -0.36
PTPRF-207ENST00000436724 SPRR4Q96PI1 79 aa12.8□□□□□ -0.36
PTPRF-207ENST00000436724 BPY2O14599 106 aa12.78□□□□□ -0.36
PTPRF-207ENST00000436724 A0A1B0GVY2 172 aa12.77□□□□□ -0.36
PTPRF-207ENST00000436724 IGLV8-61A0A075B6I0 122 aa12.77□□□□□ -0.37
PTPRF-207ENST00000436724 A0A1B0GW54 56 aa12.77□□□□□ -0.37
PTPRF-207ENST00000436724 Q8NBF4 154 aa12.77□□□□□ -0.37
PTPRF-207ENST00000436724 ANAPC11Q9NYG5 84 aa12.76□□□□□ -0.37
PTPRF-207ENST00000436724 DYNC1H1Q14204 4646 aaKnown RBP12.75□□□□□ -0.37
PTPRF-207ENST00000436724 KLKP1Q107X0 134 aa12.74□□□□□ -0.37
PTPRF-207ENST00000436724 H7BZZ5 65 aa12.73□□□□□ -0.37
PTPRF-207ENST00000436724 IGLV9-49A0A0B4J1Y8 123 aa12.72□□□□□ -0.37
PTPRF-207ENST00000436724 SNURFQ9Y675 71 aa12.72□□□□□ -0.37
PTPRF-207ENST00000436724 LINC00483Q53H64 154 aa12.71□□□□□ -0.37
PTPRF-207ENST00000436724 OXTP01178 125 aa12.71□□□□□ -0.37
PTPRF-207ENST00000436724 VPS13BQ7Z7G8 4022 aa12.71□□□□□ -0.38
PTPRF-207ENST00000436724 ZNF706Q9Y5V0 76 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-207ENST00000436724 SVIPQ8NHG7 77 aa12.7□□□□□ -0.38
PTPRF-207ENST00000436724 RYR3Q15413 4870 aa12.67□□□□□ -0.38
PTPRF-207ENST00000436724 OCR1Q9BZK8 76 aa12.66□□□□□ -0.38
PTPRF-207ENST00000436724 FAM236DA0A1B0GTK5 79 aa12.64□□□□□ -0.39
PTPRF-207ENST00000436724 FAM236CP0DP71 79 aa12.64□□□□□ -0.39
PTPRF-207ENST00000436724 A0A087WSZ3 146 aa12.62□□□□□ -0.39
PTPRF-207ENST00000436724 DSCR10P59022 87 aa12.62□□□□□ -0.39
PTPRF-207ENST00000436724 MOBPQ13875 183 aa12.61□□□□□ -0.39
PTPRF-207ENST00000436724 TMEM254Q8TBM7 123 aa12.6□□□□□ -0.39
PTPRF-207ENST00000436724 APOBP04114 4563 aaKnown RBP12.6□□□□□ -0.39
PTPRF-207ENST00000436724 SMR3BP02814 79 aaPredicted RBP12.58□□□□□ -0.4
PTPRF-207ENST00000436724 NDUFC1O43677 76 aa12.56□□□□□ -0.4
PTPRF-207ENST00000436724 HRCT1Q6UXD1 115 aa12.55□□□□□ -0.4
PTPRF-207ENST00000436724 K7EQZ3 153 aa12.54□□□□□ -0.4
PTPRF-207ENST00000436724 A0A0U1RQV1 116 aa12.54□□□□□ -0.4
PTPRF-207ENST00000436724 DEFB116Q30KQ4 102 aa12.53□□□□□ -0.4
PTPRF-207ENST00000436724 FAT1Q14517 4588 aa12.52□□□□□ -0.4
PTPRF-207ENST00000436724 SERP1Q9Y6X1 66 aa12.52□□□□□ -0.41
PTPRF-207ENST00000436724 RPL37AP61513 92 aaKnown RBP12.5□□□□□ -0.41
PTPRF-207ENST00000436724 A0A087X002 238 aa12.5□□□□□ -0.41
PTPRF-207ENST00000436724 Q5XG85 94 aa12.47□□□□□ -0.41
PTPRF-207ENST00000436724 KRTAP1-4P0C5Y4 121 aa12.46□□□□□ -0.42
PTPRF-207ENST00000436724 KRTAP13-2Q52LG2 175 aa12.44□□□□□ -0.42
PTPRF-207ENST00000436724 HCG22E2RYF7 251 aa12.42□□□□□ -0.42
PTPRF-207ENST00000436724 ATP5EP56381 51 aaPredicted RBP12.4□□□□□ -0.42
PTPRF-207ENST00000436724 C4orf26Q17RF5 130 aa12.4□□□□□ -0.42
PTPRF-207ENST00000436724 LINC00472Q9H8W2 130 aa12.4□□□□□ -0.42
PTPRF-207ENST00000436724 KRTAP10-4P60372 401 aaPredicted RBP12.37□□□□□ -0.43
PTPRF-207ENST00000436724 FAM229BQ4G0N7 80 aa12.37□□□□□ -0.43
PTPRF-207ENST00000436724 SSBP3-AS1Q7Z2R9 100 aa12.37□□□□□ -0.43
PTPRF-207ENST00000436724 PLA2G1BP04054 148 aaKnown RBP12.37□□□□□ -0.43
PTPRF-207ENST00000436724 SPINK6Q6UWN8 80 aa12.37□□□□□ -0.43
PTPRF-207ENST00000436724 Q96NJ1 140 aa12.35□□□□□ -0.43
PTPRF-207ENST00000436724 ZCCHC13Q8WW36 166 aaKnown RBP12.34□□□□□ -0.43
PTPRF-207ENST00000436724 WFDC13Q8IUB5 93 aa12.33□□□□□ -0.44
PTPRF-207ENST00000436724 C5orf47Q569G3 176 aa12.32□□□□□ -0.44
PTPRF-207ENST00000436724 KRTAP29-1A8MX34 341 aaPredicted RBP12.3□□□□□ -0.44
PTPRF-207ENST00000436724 SMIM26A0A096LP01 95 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms