RNA–Protein interactions for RNA: ENST00000434274.2

LIMS1-209, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 3

Gene LIMS1, Length 779 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-209ENST00000434274 CLEC2BQ92478 149 aa8.18□□□□□ -1.1
LIMS1-209ENST00000434274 IGLV8-61A0A075B6I0 122 aa8.17□□□□□ -1.1
LIMS1-209ENST00000434274 GHRHP01286 108 aa8.17□□□□□ -1.1
LIMS1-209ENST00000434274 TMEM238LA0A1B0GVL6 79 aa8.16□□□□□ -1.1
LIMS1-209ENST00000434274 A6NJY4 79 aa8.16□□□□□ -1.1
LIMS1-209ENST00000434274 RAB37Q96AX2 223 aa8.16□□□□□ -1.1
LIMS1-209ENST00000434274 VAMP8Q9BV40 100 aa8.16□□□□□ -1.1
LIMS1-209ENST00000434274 A0A0B4J2C4 111 aa8.15□□□□□ -1.1
LIMS1-209ENST00000434274 C12orf57Q99622 126 aa8.15□□□□□ -1.1
LIMS1-209ENST00000434274 MUC17Q685J3 4493 aa8.14□□□□□ -1.11
LIMS1-209ENST00000434274 H0YGX0 51 aa8.14□□□□□ -1.11
LIMS1-209ENST00000434274 SPATA45Q537H7 98 aa8.14□□□□□ -1.11
LIMS1-209ENST00000434274 C1orf195Q5TG92 126 aa8.14□□□□□ -1.11
LIMS1-209ENST00000434274 SNHG12Q9BXW3 62 aa8.13□□□□□ -1.11
LIMS1-209ENST00000434274 PAM16Q9Y3D7 125 aa8.13□□□□□ -1.11
LIMS1-209ENST00000434274 TRBV7-7A0A0K0K1E9 115 aa8.1□□□□□ -1.11
LIMS1-209ENST00000434274 A0A1B0GX51 115 aa8.1□□□□□ -1.11
LIMS1-209ENST00000434274 C9orf92A6NGG3 77 aa8.1□□□□□ -1.11
LIMS1-209ENST00000434274 C14orf144Q96I85 54 aa8.1□□□□□ -1.11
LIMS1-209ENST00000434274 CFC1BP0CG36 223 aa8.09□□□□□ -1.11
LIMS1-209ENST00000434274 CFC1P0CG37 223 aa8.09□□□□□ -1.11
LIMS1-209ENST00000434274 SS18L2Q9UHA2 77 aa8.09□□□□□ -1.11
LIMS1-209ENST00000434274 IGFL1Q6UW32 110 aa8.08□□□□□ -1.12
LIMS1-209ENST00000434274 CEND1Q8N111 149 aa8.07□□□□□ -1.12
LIMS1-209ENST00000434274 PRO1854Q9UHT4 67 aa8.06□□□□□ -1.12
LIMS1-209ENST00000434274 A0A0G2JQZ4 141 aa8.05□□□□□ -1.12
LIMS1-209ENST00000434274 H3BQ85 93 aa8.05□□□□□ -1.12
LIMS1-209ENST00000434274 PCOTHQ58A44 107 aa8.05□□□□□ -1.12
LIMS1-209ENST00000434274 FAT4Q6V0I7 4981 aa8.05□□□□□ -1.12
LIMS1-209ENST00000434274 RPL37P61927 97 aaKnown RBP8.04□□□□□ -1.12
LIMS1-209ENST00000434274 Q6Q795 121 aa8.04□□□□□ -1.12
LIMS1-209ENST00000434274 C2orf91Q6ZV80 131 aa8.04□□□□□ -1.12
LIMS1-209ENST00000434274 KRTAP4-1Q9BYQ7 146 aa8.04□□□□□ -1.12
LIMS1-209ENST00000434274 LST1O00453 97 aa8.02□□□□□ -1.13
LIMS1-209ENST00000434274 TEN1Q86WV5 123 aa8.01□□□□□ -1.13
LIMS1-209ENST00000434274 NDUFV3P56181 108 aaKnown RBP8□□□□□ -1.13
LIMS1-209ENST00000434274 HSD52Q0P140 79 aa8□□□□□ -1.13
LIMS1-209ENST00000434274 H3BUT2 72 aa7.99□□□□□ -1.13
LIMS1-209ENST00000434274 DNAL4O96015 105 aa7.99□□□□□ -1.13
LIMS1-209ENST00000434274 COX6CP09669 75 aa7.99□□□□□ -1.13
LIMS1-209ENST00000434274 KRTAP9-2Q9BYQ4 174 aa7.98□□□□□ -1.13
LIMS1-209ENST00000434274 FXYD2P54710 66 aa7.96□□□□□ -1.14
LIMS1-209ENST00000434274 FAM218AQ96MZ4 157 aa7.96□□□□□ -1.14
LIMS1-209ENST00000434274 H3BMG7 143 aa7.95□□□□□ -1.14
LIMS1-209ENST00000434274 FABP2P12104 132 aa7.95□□□□□ -1.14
LIMS1-209ENST00000434274 Q75L30 129 aa7.95□□□□□ -1.14
LIMS1-209ENST00000434274 TRIAP1O43715 76 aa7.94□□□□□ -1.14
LIMS1-209ENST00000434274 PYY3Q5JQD4 70 aa7.94□□□□□ -1.14
LIMS1-209ENST00000434274 ORMDL1Q9P0S3 153 aa7.94□□□□□ -1.14
LIMS1-209ENST00000434274 PSMB2P49721 201 aa7.93□□□□□ -1.14
LIMS1-209ENST00000434274 ATP11AUNQ6ZP68 121 aa7.93□□□□□ -1.14
LIMS1-209ENST00000434274 UQCR10Q9UDW1 63 aa7.93□□□□□ -1.14
LIMS1-209ENST00000434274 TMEM256-PLSCR3K7ERE1 68 aa7.92□□□□□ -1.14
LIMS1-209ENST00000434274 OBSCN-AS1Q96MR7 158 aa7.91□□□□□ -1.14
LIMS1-209ENST00000434274 A0A087WSZ3 146 aa7.9□□□□□ -1.14
LIMS1-209ENST00000434274 TRBV7-4A0A0J9YYF1 115 aa7.88□□□□□ -1.15
LIMS1-209ENST00000434274 LCE2CQ5TA81 110 aa7.88□□□□□ -1.15
LIMS1-209ENST00000434274 COX6B2Q6YFQ2 88 aa7.88□□□□□ -1.15
LIMS1-209ENST00000434274 ANKRD29Q8N6D5 301 aa7.88□□□□□ -1.15
LIMS1-209ENST00000434274 KRTAP19-2Q3LHN2 52 aa7.87□□□□□ -1.15
LIMS1-209ENST00000434274 C21orf62-AS1Q17RA5 79 aa7.86□□□□□ -1.15
LIMS1-209ENST00000434274 TRACP01848 142 aa7.85□□□□□ -1.15
LIMS1-209ENST00000434274 UBE2V1Q13404 147 aa7.85□□□□□ -1.15
LIMS1-209ENST00000434274 Q96NJ1 140 aa7.85□□□□□ -1.15
LIMS1-209ENST00000434274 MT1HP80294 61 aa7.84□□□□□ -1.15
LIMS1-209ENST00000434274 C20orf166-AS1Q96NR2 134 aa7.84□□□□□ -1.15
LIMS1-209ENST00000434274 SIGMAR1Q99720 223 aa7.84□□□□□ -1.15
LIMS1-209ENST00000434274 K7ERJ3 54 aa7.83□□□□□ -1.16
LIMS1-209ENST00000434274 TMA7Q9Y2S6 64 aaKnown RBP7.83□□□□□ -1.16
LIMS1-209ENST00000434274 A0A1W2PNM2 257 aa7.82□□□□□ -1.16
LIMS1-209ENST00000434274 LCE2DQ5TA82 110 aaPredicted RBP7.81□□□□□ -1.16
LIMS1-209ENST00000434274 A8MUU9 505 aa7.8□□□□□ -1.16
LIMS1-209ENST00000434274 CCKP06307 115 aa7.8□□□□□ -1.16
LIMS1-209ENST00000434274 SCGB1C2P0DMR2 95 aa7.8□□□□□ -1.16
LIMS1-209ENST00000434274 M0R143 59 aa7.79□□□□□ -1.16
LIMS1-209ENST00000434274 M0R2T5 61 aa7.78□□□□□ -1.16
LIMS1-209ENST00000434274 IGKV4-1P06312 121 aa7.77□□□□□ -1.17
LIMS1-209ENST00000434274 DSCR8Q96T75 97 aa7.77□□□□□ -1.17
LIMS1-209ENST00000434274 TRBV20-1A0A075B6N2 111 aa7.76□□□□□ -1.17
LIMS1-209ENST00000434274 LINC00313P59037 77 aa7.76□□□□□ -1.17
LIMS1-209ENST00000434274 RBM3P98179 157 aaKnown RBP7.76□□□□□ -1.17
LIMS1-209ENST00000434274 KRTAP9-6A0A140TA67 174 aa7.75□□□□□ -1.17
LIMS1-209ENST00000434274 A0A1B0GV72 72 aa7.73□□□□□ -1.17
LIMS1-209ENST00000434274 LYRM7Q5U5X0 104 aa7.73□□□□□ -1.17
LIMS1-209ENST00000434274 J3KT08 172 aa7.72□□□□□ -1.17
LIMS1-209ENST00000434274 DSCR10P59022 87 aa7.72□□□□□ -1.17
LIMS1-209ENST00000434274 LINC00472Q9H8W2 130 aa7.72□□□□□ -1.17
LIMS1-209ENST00000434274 A0A1B0GW54 56 aa7.71□□□□□ -1.18
LIMS1-209ENST00000434274 C8orf87E5RJ46 101 aa7.71□□□□□ -1.18
LIMS1-209ENST00000434274 SMIM6P0DI80 62 aa7.71□□□□□ -1.18
LIMS1-209ENST00000434274 C9JAW5 83 aa7.7□□□□□ -1.18
LIMS1-209ENST00000434274 KRTAP10-6P60371 365 aaPredicted RBP7.7□□□□□ -1.18
LIMS1-209ENST00000434274 ATXN8Q156A1 80 aa7.7□□□□□ -1.18
LIMS1-209ENST00000434274 VPS25Q9BRG1 176 aa7.7□□□□□ -1.18
LIMS1-209ENST00000434274 JMJD7-PLA2G4BH0Y9G9 81 aa7.69□□□□□ -1.18
LIMS1-209ENST00000434274 BAALC-AS2P0C853 105 aa7.69□□□□□ -1.18
LIMS1-209ENST00000434274 PDE6GP18545 87 aa7.69□□□□□ -1.18
LIMS1-209ENST00000434274 LORP23490 312 aaPredicted RBP7.69□□□□□ -1.18
LIMS1-209ENST00000434274 IGHV6-1A0A0B4J1U7 121 aa7.66□□□□□ -1.18
LIMS1-209ENST00000434274 A0A1B0GVX0 72 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms