RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 SPAG11BQ08648 103 aa1.19□□□□□ -2.22
USP40-204ENST00000427947 SPINK13Q1W4C9 94 aa1.19□□□□□ -2.22
USP40-204ENST00000427947 SPAG11AQ6PDA7 123 aa1.19□□□□□ -2.22
USP40-204ENST00000427947 C10orf99Q6UWK7 81 aa1.19□□□□□ -2.22
USP40-204ENST00000427947 FAM213BQ8TBF2 198 aa1.19□□□□□ -2.22
USP40-204ENST00000427947 R4GMQ9 66 aa1.19□□□□□ -2.22
USP40-204ENST00000427947 DNAH3Q8TD57 4116 aa1.19□□□□□ -2.22
USP40-204ENST00000427947 MED12Q93074 2177 aa1.18□□□□□ -2.22
USP40-204ENST00000427947 TRGV1A0A0A0MS02 117 aa1.18□□□□□ -2.22
USP40-204ENST00000427947 CHKB-CPT1BH3BT56 60 aa1.18□□□□□ -2.22
USP40-204ENST00000427947 CCL22O00626 93 aa1.18□□□□□ -2.22
USP40-204ENST00000427947 KRTDAPP60985 99 aa1.18□□□□□ -2.22
USP40-204ENST00000427947 UBA52P62987 128 aaKnown RBP1.18□□□□□ -2.22
USP40-204ENST00000427947 DEFB110Q30KQ9 67 aa1.18□□□□□ -2.22
USP40-204ENST00000427947 Q8N6K4 173 aa1.18□□□□□ -2.22
USP40-204ENST00000427947 MGST2Q99735 147 aa1.18□□□□□ -2.22
USP40-204ENST00000427947 Q9H521 79 aa1.18□□□□□ -2.22
USP40-204ENST00000427947 DYNLRB1Q9NP97 96 aa1.18□□□□□ -2.22
USP40-204ENST00000427947 V9GYH0 126 aa1.18□□□□□ -2.22
USP40-204ENST00000427947 VPS13DQ5THJ4 4388 aa1.18□□□□□ -2.22
USP40-204ENST00000427947 TRAV1-2A0A0B4J238 106 aa1.17□□□□□ -2.22
USP40-204ENST00000427947 A0A0G2JND7 137 aa1.17□□□□□ -2.22
USP40-204ENST00000427947 CTXND1A0A1B0GTU2 59 aa1.17□□□□□ -2.22
USP40-204ENST00000427947 hADV29S1A0JD25 119 aa1.17□□□□□ -2.22
USP40-204ENST00000427947 H3BQ15 152 aa1.17□□□□□ -2.22
USP40-204ENST00000427947 STATHP02808 62 aa1.17□□□□□ -2.22
USP40-204ENST00000427947 MT-ATP8P03928 68 aa1.17□□□□□ -2.22
USP40-204ENST00000427947 LINC00032P0C843 101 aa1.17□□□□□ -2.22
USP40-204ENST00000427947 TFF3Q07654 80 aa1.17□□□□□ -2.22
USP40-204ENST00000427947 SFTA2Q6UW10 78 aa1.17□□□□□ -2.22
USP40-204ENST00000427947 Q96NJ1 140 aa1.17□□□□□ -2.22
USP40-204ENST00000427947 PMCHL2Q9BQD1 86 aa1.17□□□□□ -2.22
USP40-204ENST00000427947 DPY30Q9C005 99 aa1.17□□□□□ -2.22
USP40-204ENST00000427947 UQCR10Q9UDW1 63 aa1.17□□□□□ -2.22
USP40-204ENST00000427947 LENEPQ9Y5L5 61 aa1.17□□□□□ -2.22
USP40-204ENST00000427947 DNAH11Q96DT5 4516 aa1.17□□□□□ -2.22
USP40-204ENST00000427947 ROS1P08922 2347 aa1.16□□□□□ -2.22
USP40-204ENST00000427947 H0YGG7 62 aa1.16□□□□□ -2.22
USP40-204ENST00000427947 MT4P47944 62 aa1.16□□□□□ -2.22
USP40-204ENST00000427947 SEC11AP67812 179 aa1.16□□□□□ -2.22
USP40-204ENST00000427947 Q0VG73 95 aa1.16□□□□□ -2.22
USP40-204ENST00000427947 BAGE3Q86Y29 109 aa1.16□□□□□ -2.22
USP40-204ENST00000427947 DEFB107AQ8IZN7 70 aa1.16□□□□□ -2.22
USP40-204ENST00000427947 LCN9Q8WX39 176 aa1.16□□□□□ -2.22
USP40-204ENST00000427947 VAMP8Q9BV40 100 aa1.16□□□□□ -2.22
USP40-204ENST00000427947 SNHG12Q9BXW3 62 aa1.16□□□□□ -2.22
USP40-204ENST00000427947 NDUFA4L2Q9NRX3 87 aa1.16□□□□□ -2.22
USP40-204ENST00000427947 TNCP24821 2201 aa1.15□□□□□ -2.23
USP40-204ENST00000427947 SMIM31A0A1B0GVY4 71 aa1.15□□□□□ -2.23
USP40-204ENST00000427947 COX6B1P14854 86 aa1.15□□□□□ -2.23
USP40-204ENST00000427947 SMIM11AP58511 58 aa1.15□□□□□ -2.23
USP40-204ENST00000427947 FXYD6P3P58550 94 aa1.15□□□□□ -2.23
USP40-204ENST00000427947 WFDC6Q9BQY6 131 aa1.15□□□□□ -2.23
USP40-204ENST00000427947 PROK2Q9HC23 129 aa1.15□□□□□ -2.23
USP40-204ENST00000427947 NPVFQ9HCQ7 196 aa1.15□□□□□ -2.23
USP40-204ENST00000427947 M0R135 149 aa1.14□□□□□ -2.23
USP40-204ENST00000427947 HMGN4O00479 90 aa1.14□□□□□ -2.23
USP40-204ENST00000427947 TRAPPC2P0DI81 140 aa1.14□□□□□ -2.23
USP40-204ENST00000427947 TRAPPC2BP0DI82 140 aa1.14□□□□□ -2.23
USP40-204ENST00000427947 S100A3P33764 101 aa1.14□□□□□ -2.23
USP40-204ENST00000427947 CCL18P55774 89 aa1.14□□□□□ -2.23
USP40-204ENST00000427947 KRTAP10-4P60372 401 aaPredicted RBP1.14□□□□□ -2.23
USP40-204ENST00000427947 RPL37P61927 97 aaKnown RBP1.14□□□□□ -2.23
USP40-204ENST00000427947 SNRPGP62308 76 aaKnown RBP1.14□□□□□ -2.23
USP40-204ENST00000427947 RPL38P63173 70 aaKnown RBP1.14□□□□□ -2.23
USP40-204ENST00000427947 C6orf52Q5T4I8 152 aa1.14□□□□□ -2.23
USP40-204ENST00000427947 TMEM170BQ5T4T1 132 aa1.14□□□□□ -2.23
USP40-204ENST00000427947 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.14□□□□□ -2.23
USP40-204ENST00000427947 RPS27LQ71UM5 84 aaKnown RBP1.14□□□□□ -2.23
USP40-204ENST00000427947 DNAH2Q9P225 4427 aa1.14□□□□□ -2.23
USP40-204ENST00000427947 TNXBP22105 4242 aa1.13□□□□□ -2.23
USP40-204ENST00000427947 A0A087WXM4 84 aa1.13□□□□□ -2.23
USP40-204ENST00000427947 PIN1P1O15428 100 aa1.13□□□□□ -2.23
USP40-204ENST00000427947 HMGN2P05204 90 aaKnown RBP1.13□□□□□ -2.23
USP40-204ENST00000427947 GNG2P59768 71 aa1.13□□□□□ -2.23
USP40-204ENST00000427947 SMIM11BQ8TCY0 68 aa1.13□□□□□ -2.23
USP40-204ENST00000427947 BPESC1Q9GZL8 116 aa1.13□□□□□ -2.23
USP40-204ENST00000427947 PRO1854Q9UHT4 67 aa1.13□□□□□ -2.23
USP40-204ENST00000427947 MUC17Q685J3 4493 aa1.13□□□□□ -2.23
USP40-204ENST00000427947 TMEM14DPA8MWL7 114 aa1.12□□□□□ -2.23
USP40-204ENST00000427947 DEFB108AA8MXU0 73 aa1.12□□□□□ -2.23
USP40-204ENST00000427947 F8VRH5 84 aa1.12□□□□□ -2.23
USP40-204ENST00000427947 ZNF137PP52743 207 aa1.12□□□□□ -2.23
USP40-204ENST00000427947 Q5VV11 94 aa1.12□□□□□ -2.23
USP40-204ENST00000427947 VMO1Q7Z5L0 202 aa1.12□□□□□ -2.23
USP40-204ENST00000427947 FAM167A-AS1Q96KT0 104 aa1.12□□□□□ -2.23
USP40-204ENST00000427947 CMC2Q9NRP2 79 aa1.12□□□□□ -2.23
USP40-204ENST00000427947 A0A096LNT2 108 aa1.11□□□□□ -2.23
USP40-204ENST00000427947 TRAV22A0A0B4J277 110 aa1.11□□□□□ -2.23
USP40-204ENST00000427947 IGLC7A0M8Q6 106 aa1.11□□□□□ -2.23
USP40-204ENST00000427947 K7EIL1 84 aa1.11□□□□□ -2.23
USP40-204ENST00000427947 APOC3P02656 99 aa1.11□□□□□ -2.23
USP40-204ENST00000427947 COX6CP09669 75 aa1.11□□□□□ -2.23
USP40-204ENST00000427947 SPRR2EP22531 72 aa1.11□□□□□ -2.23
USP40-204ENST00000427947 GCHFRP30047 84 aa1.11□□□□□ -2.23
USP40-204ENST00000427947 SPRR2BP35325 72 aa1.11□□□□□ -2.23
USP40-204ENST00000427947 SPRR2AP35326 72 aa1.11□□□□□ -2.23
USP40-204ENST00000427947 FAUP35544 74 aaKnown RBP1.11□□□□□ -2.23
USP40-204ENST00000427947 CFAP126Q5VTH2 177 aa1.11□□□□□ -2.23
USP40-204ENST00000427947 BAGE2Q86Y30 109 aa1.11□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms