RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 hADV29S1A0JD25 119 aa10.44□□□□□ -0.74
SF3A1-202ENST00000411423 C2orf91Q6ZV80 131 aa10.44□□□□□ -0.74
SF3A1-202ENST00000411423 CFC1BP0CG36 223 aa10.43□□□□□ -0.74
SF3A1-202ENST00000411423 CFC1P0CG37 223 aa10.43□□□□□ -0.74
SF3A1-202ENST00000411423 Q5XG85 94 aa10.42□□□□□ -0.74
SF3A1-202ENST00000411423 C9orf92A6NGG3 77 aa10.41□□□□□ -0.74
SF3A1-202ENST00000411423 SEC61BP60468 96 aaKnown RBP10.41□□□□□ -0.74
SF3A1-202ENST00000411423 C1orf195Q5TG92 126 aa10.41□□□□□ -0.74
SF3A1-202ENST00000411423 BVES-AS1Q5T3Y7 98 aa10.36□□□□□ -0.75
SF3A1-202ENST00000411423 IGLV8-61A0A075B6I0 122 aa10.35□□□□□ -0.75
SF3A1-202ENST00000411423 IGFL1Q6UW32 110 aa10.35□□□□□ -0.75
SF3A1-202ENST00000411423 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.35□□□□□ -0.75
SF3A1-202ENST00000411423 A0A0B4J2C4 111 aa10.34□□□□□ -0.75
SF3A1-202ENST00000411423 FAM218AQ96MZ4 157 aa10.34□□□□□ -0.75
SF3A1-202ENST00000411423 F8WEM9 126 aa10.33□□□□□ -0.76
SF3A1-202ENST00000411423 CEND1Q8N111 149 aa10.32□□□□□ -0.76
SF3A1-202ENST00000411423 RAB37Q96AX2 223 aa10.32□□□□□ -0.76
SF3A1-202ENST00000411423 OCIAD2Q56VL3 154 aa10.31□□□□□ -0.76
SF3A1-202ENST00000411423 FXYD2P54710 66 aa10.3□□□□□ -0.76
SF3A1-202ENST00000411423 PCOTHQ58A44 107 aa10.3□□□□□ -0.76
SF3A1-202ENST00000411423 CLEC2BQ92478 149 aa10.29□□□□□ -0.76
SF3A1-202ENST00000411423 H3BUT2 72 aa10.28□□□□□ -0.76
SF3A1-202ENST00000411423 Q6JHZ5 121 aa10.28□□□□□ -0.76
SF3A1-202ENST00000411423 TRBV7-7A0A0K0K1E9 115 aa10.27□□□□□ -0.77
SF3A1-202ENST00000411423 PPDPFLQ8WWR9 84 aa10.27□□□□□ -0.77
SF3A1-202ENST00000411423 TCL1BO95988 128 aa10.25□□□□□ -0.77
SF3A1-202ENST00000411423 KRTAP19-2Q3LHN2 52 aa10.25□□□□□ -0.77
SF3A1-202ENST00000411423 LCE2CQ5TA81 110 aa10.24□□□□□ -0.77
SF3A1-202ENST00000411423 SNHG12Q9BXW3 62 aa10.24□□□□□ -0.77
SF3A1-202ENST00000411423 UQCR10Q9UDW1 63 aa10.24□□□□□ -0.77
SF3A1-202ENST00000411423 PRO1854Q9UHT4 67 aa10.24□□□□□ -0.77
SF3A1-202ENST00000411423 TMEM238LA0A1B0GVL6 79 aa10.23□□□□□ -0.77
SF3A1-202ENST00000411423 A6NJY4 79 aa10.23□□□□□ -0.77
SF3A1-202ENST00000411423 H0YGX0 51 aa10.23□□□□□ -0.77
SF3A1-202ENST00000411423 HSD52Q0P140 79 aa10.23□□□□□ -0.77
SF3A1-202ENST00000411423 TRIAP1O43715 76 aa10.21□□□□□ -0.77
SF3A1-202ENST00000411423 KRTAP9-2Q9BYQ4 174 aa10.21□□□□□ -0.77
SF3A1-202ENST00000411423 SMIM6P0DI80 62 aa10.2□□□□□ -0.78
SF3A1-202ENST00000411423 RPL37P61927 97 aaKnown RBP10.19□□□□□ -0.78
SF3A1-202ENST00000411423 K7ERJ3 54 aa10.18□□□□□ -0.78
SF3A1-202ENST00000411423 NDUFV3P56181 108 aaKnown RBP10.18□□□□□ -0.78
SF3A1-202ENST00000411423 A0A1B0GX51 115 aa10.14□□□□□ -0.79
SF3A1-202ENST00000411423 Q6Q795 121 aa10.13□□□□□ -0.79
SF3A1-202ENST00000411423 SNCGO76070 127 aa10.11□□□□□ -0.79
SF3A1-202ENST00000411423 LOC105371267A0A1B0GV96 52 aa10.1□□□□□ -0.79
SF3A1-202ENST00000411423 H3BMG7 143 aa10.1□□□□□ -0.79
SF3A1-202ENST00000411423 FABP2P12104 132 aa10.1□□□□□ -0.79
SF3A1-202ENST00000411423 LST1O00453 97 aa10.09□□□□□ -0.79
SF3A1-202ENST00000411423 TEN1Q86WV5 123 aa10.09□□□□□ -0.79
SF3A1-202ENST00000411423 A0A1W2PNM2 257 aa10.08□□□□□ -0.8
SF3A1-202ENST00000411423 OBSCN-AS1Q96MR7 158 aa10.08□□□□□ -0.8
SF3A1-202ENST00000411423 A0A087WSZ3 146 aa10.07□□□□□ -0.8
SF3A1-202ENST00000411423 MT1HP80294 61 aa10.07□□□□□ -0.8
SF3A1-202ENST00000411423 Q96NJ1 140 aa10.07□□□□□ -0.8
SF3A1-202ENST00000411423 PSMB2P49721 201 aa10.05□□□□□ -0.8
SF3A1-202ENST00000411423 A0A1B0GV72 72 aa10.04□□□□□ -0.8
SF3A1-202ENST00000411423 ORMDL1Q9P0S3 153 aa10.02□□□□□ -0.81
SF3A1-202ENST00000411423 SS18L2Q9UHA2 77 aa10.02□□□□□ -0.81
SF3A1-202ENST00000411423 Q75L30 129 aa10.01□□□□□ -0.81
SF3A1-202ENST00000411423 DNAL4O96015 105 aa10□□□□□ -0.81
SF3A1-202ENST00000411423 GHRHP01286 108 aa10□□□□□ -0.81
SF3A1-202ENST00000411423 KRTAP9-6A0A140TA67 174 aa9.99□□□□□ -0.81
SF3A1-202ENST00000411423 FLGP20930 4061 aaPredicted RBP9.98□□□□□ -0.81
SF3A1-202ENST00000411423 M0R143 59 aa9.98□□□□□ -0.81
SF3A1-202ENST00000411423 TSTD3H0UI37 97 aa9.97□□□□□ -0.81
SF3A1-202ENST00000411423 COX6CP09669 75 aa9.97□□□□□ -0.81
SF3A1-202ENST00000411423 ANKRD29Q8N6D5 301 aa9.96□□□□□ -0.82
SF3A1-202ENST00000411423 TMEM256-PLSCR3K7ERE1 68 aa9.94□□□□□ -0.82
SF3A1-202ENST00000411423 C20orf166-AS1Q96NR2 134 aa9.94□□□□□ -0.82
SF3A1-202ENST00000411423 TRBV7-4A0A0J9YYF1 115 aa9.93□□□□□ -0.82
SF3A1-202ENST00000411423 DSCR10P59022 87 aa9.93□□□□□ -0.82
SF3A1-202ENST00000411423 H3BQ85 93 aa9.92□□□□□ -0.82
SF3A1-202ENST00000411423 TRACP01848 142 aa9.92□□□□□ -0.82
SF3A1-202ENST00000411423 A8MUU9 505 aa9.91□□□□□ -0.82
SF3A1-202ENST00000411423 UBE2V1Q13404 147 aa9.91□□□□□ -0.82
SF3A1-202ENST00000411423 ATP11AUNQ6ZP68 121 aa9.91□□□□□ -0.82
SF3A1-202ENST00000411423 LCE2DQ5TA82 110 aaPredicted RBP9.9□□□□□ -0.82
SF3A1-202ENST00000411423 SCGB1C2P0DMR2 95 aa9.89□□□□□ -0.83
SF3A1-202ENST00000411423 SIGMAR1Q99720 223 aa9.89□□□□□ -0.83
SF3A1-202ENST00000411423 CCKP06307 115 aa9.88□□□□□ -0.83
SF3A1-202ENST00000411423 DEFB116Q30KQ4 102 aa9.88□□□□□ -0.83
SF3A1-202ENST00000411423 IGKV4-1P06312 121 aa9.87□□□□□ -0.83
SF3A1-202ENST00000411423 LORP23490 312 aaPredicted RBP9.87□□□□□ -0.83
SF3A1-202ENST00000411423 NOTCH2NLQ7Z3S9 236 aa9.87□□□□□ -0.83
SF3A1-202ENST00000411423 NAA38Q9BRA0 125 aaKnown RBP9.87□□□□□ -0.83
SF3A1-202ENST00000411423 LINC00472Q9H8W2 130 aa9.87□□□□□ -0.83
SF3A1-202ENST00000411423 KRTAP16-1A8MUX0 517 aa9.86□□□□□ -0.83
SF3A1-202ENST00000411423 KRTAP10-6P60371 365 aaPredicted RBP9.86□□□□□ -0.83
SF3A1-202ENST00000411423 COX6B2Q6YFQ2 88 aa9.85□□□□□ -0.83
SF3A1-202ENST00000411423 BAALC-AS2P0C853 105 aa9.81□□□□□ -0.84
SF3A1-202ENST00000411423 VPS25Q9BRG1 176 aa9.81□□□□□ -0.84
SF3A1-202ENST00000411423 LINC00313P59037 77 aa9.8□□□□□ -0.84
SF3A1-202ENST00000411423 RBM3P98179 157 aaKnown RBP9.8□□□□□ -0.84
SF3A1-202ENST00000411423 M0R2T5 61 aa9.77□□□□□ -0.85
SF3A1-202ENST00000411423 ATXN8Q156A1 80 aa9.76□□□□□ -0.85
SF3A1-202ENST00000411423 DSCR8Q96T75 97 aa9.76□□□□□ -0.85
SF3A1-202ENST00000411423 LYRM7Q5U5X0 104 aa9.75□□□□□ -0.85
SF3A1-202ENST00000411423 IGHV6-1A0A0B4J1U7 121 aa9.74□□□□□ -0.85
SF3A1-202ENST00000411423 FSIP2Q5CZC0 6907 aa9.73□□□□□ -0.85
SF3A1-202ENST00000411423 TRBV20-1A0A075B6N2 111 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms