RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 TRBV7-4A0A0J9YYF1 115 aa8.4□□□□□ -1.06
LIMS1-204ENST00000409441 B5MCH6 92 aa8.4□□□□□ -1.06
LIMS1-204ENST00000409441 CDK2AP2O75956 126 aa8.4□□□□□ -1.06
LIMS1-204ENST00000409441 Q6ZRX8 168 aa8.4□□□□□ -1.06
LIMS1-204ENST00000409441 KRTAP7-1Q8IUC3 87 aa8.4□□□□□ -1.06
LIMS1-204ENST00000409441 ETDCA0A1B0GVM5 59 aa8.4□□□□□ -1.07
LIMS1-204ENST00000409441 EPM2AB3EWF7 344 aa8.4□□□□□ -1.07
LIMS1-204ENST00000409441 FAM19A5Q7Z5A7 132 aaPredicted RBP8.4□□□□□ -1.07
LIMS1-204ENST00000409441 UBL5Q9BZL1 73 aa8.4□□□□□ -1.07
LIMS1-204ENST00000409441 FAM236AA0A1B0GUQ0 79 aa8.38□□□□□ -1.07
LIMS1-204ENST00000409441 FAM236BA0A1B0GV22 79 aa8.38□□□□□ -1.07
LIMS1-204ENST00000409441 RPL37AP8A6NKH3 93 aa8.38□□□□□ -1.07
LIMS1-204ENST00000409441 DNAH8Q96JB1 4490 aa8.37□□□□□ -1.07
LIMS1-204ENST00000409441 IGKV3D-7A0A0C4DH55 119 aa8.37□□□□□ -1.07
LIMS1-204ENST00000409441 SMR3BP02814 79 aaPredicted RBP8.35□□□□□ -1.07
LIMS1-204ENST00000409441 HIST1H4AP62805 103 aaKnown RBP8.35□□□□□ -1.07
LIMS1-204ENST00000409441 REG3GQ6UW15 175 aa8.35□□□□□ -1.07
LIMS1-204ENST00000409441 PHF5AQ7RTV0 110 aaKnown RBP8.35□□□□□ -1.07
LIMS1-204ENST00000409441 Q8N377 158 aa8.34□□□□□ -1.07
LIMS1-204ENST00000409441 Q9BRP9 147 aa8.34□□□□□ -1.07
LIMS1-204ENST00000409441 LINC01547P58512 204 aaPredicted RBP8.33□□□□□ -1.08
LIMS1-204ENST00000409441 IGLV5-48A0A075B6I7 105 aa8.32□□□□□ -1.08
LIMS1-204ENST00000409441 ATOX1O00244 68 aa8.32□□□□□ -1.08
LIMS1-204ENST00000409441 APOBP04114 4563 aaKnown RBP8.31□□□□□ -1.08
LIMS1-204ENST00000409441 Q6ZVQ6 151 aa8.31□□□□□ -1.08
LIMS1-204ENST00000409441 LCE3BQ5TA77 95 aa8.3□□□□□ -1.08
LIMS1-204ENST00000409441 DEFB105AQ8NG35 78 aa8.3□□□□□ -1.08
LIMS1-204ENST00000409441 KIAA1109Q2LD37 5005 aa8.3□□□□□ -1.08
LIMS1-204ENST00000409441 UBE2BP63146 152 aa8.29□□□□□ -1.08
LIMS1-204ENST00000409441 A0A1B0GW54 56 aa8.29□□□□□ -1.08
LIMS1-204ENST00000409441 CXCL6P80162 114 aa8.29□□□□□ -1.08
LIMS1-204ENST00000409441 KRTAP11-1Q8IUC1 163 aa8.29□□□□□ -1.08
LIMS1-204ENST00000409441 BIRC6Q9NR09 4857 aa8.28□□□□□ -1.08
LIMS1-204ENST00000409441 CCDC179H3BU77 68 aa8.27□□□□□ -1.09
LIMS1-204ENST00000409441 FAM229AH3BQW9 127 aa8.26□□□□□ -1.09
LIMS1-204ENST00000409441 KRTAP17-1Q9BYP8 105 aa8.26□□□□□ -1.09
LIMS1-204ENST00000409441 A0A087WVE0 104 aa8.25□□□□□ -1.09
LIMS1-204ENST00000409441 ERC2-IT1O76042 136 aa8.25□□□□□ -1.09
LIMS1-204ENST00000409441 ST20-AS1Q8NBB2 130 aa8.25□□□□□ -1.09
LIMS1-204ENST00000409441 PSORS1C2Q9UIG4 136 aa8.25□□□□□ -1.09
LIMS1-204ENST00000409441 FAM19A1Q7Z5A9 133 aa8.25□□□□□ -1.09
LIMS1-204ENST00000409441 Q8N1X5 172 aa8.25□□□□□ -1.09
LIMS1-204ENST00000409441 KRTAP4-12Q9BQ66 201 aa8.25□□□□□ -1.09
LIMS1-204ENST00000409441 RYR1P21817 5038 aa8.25□□□□□ -1.09
LIMS1-204ENST00000409441 H0Y9J4 135 aa8.24□□□□□ -1.09
LIMS1-204ENST00000409441 UQCRQO14949 82 aa8.24□□□□□ -1.09
LIMS1-204ENST00000409441 RPL37AP61513 92 aaKnown RBP8.24□□□□□ -1.09
LIMS1-204ENST00000409441 HSPG2P98160 4391 aa8.24□□□□□ -1.09
LIMS1-204ENST00000409441 C3orf22Q8N5N4 141 aa8.23□□□□□ -1.09
LIMS1-204ENST00000409441 COX7CP15954 63 aa8.22□□□□□ -1.09
LIMS1-204ENST00000409441 C1orf137Q5JT78 98 aa8.22□□□□□ -1.09
LIMS1-204ENST00000409441 Q5VSD8 79 aa8.22□□□□□ -1.09
LIMS1-204ENST00000409441 BCE1O60756 84 aa8.21□□□□□ -1.09
LIMS1-204ENST00000409441 PLA2G1BP04054 148 aaKnown RBP8.21□□□□□ -1.09
LIMS1-204ENST00000409441 F8WEM9 126 aa8.2□□□□□ -1.1
LIMS1-204ENST00000409441 KRTAP10-4P60372 401 aaPredicted RBP8.2□□□□□ -1.1
LIMS1-204ENST00000409441 PRLHP81277 87 aa8.2□□□□□ -1.1
LIMS1-204ENST00000409441 NREPQ16612 68 aa8.2□□□□□ -1.1
LIMS1-204ENST00000409441 SMIM29Q86T20 159 aa8.2□□□□□ -1.1
LIMS1-204ENST00000409441 Q8NBF4 154 aa8.2□□□□□ -1.1
LIMS1-204ENST00000409441 SERP2Q8N6R1 65 aa8.19□□□□□ -1.1
LIMS1-204ENST00000409441 SPRR4Q96PI1 79 aa8.18□□□□□ -1.1
LIMS1-204ENST00000409441 FAT1Q14517 4588 aa8.18□□□□□ -1.1
LIMS1-204ENST00000409441 A0A1W2PNM2 257 aa8.18□□□□□ -1.1
LIMS1-204ENST00000409441 IGLV8-61A0A075B6I0 122 aa8.17□□□□□ -1.1
LIMS1-204ENST00000409441 IGLV7-43P04211 117 aa8.17□□□□□ -1.1
LIMS1-204ENST00000409441 SPRR1BP22528 89 aa8.17□□□□□ -1.1
LIMS1-204ENST00000409441 C9orf153Q5TBE3 101 aa8.17□□□□□ -1.1
LIMS1-204ENST00000409441 HIGD2AQ9BW72 106 aa8.17□□□□□ -1.1
LIMS1-204ENST00000409441 SRRM2Q9UQ35 2752 aaKnown RBP8.16□□□□□ -1.1
LIMS1-204ENST00000409441 CRYGAP11844 174 aa8.15□□□□□ -1.1
LIMS1-204ENST00000409441 UBE2AP49459 152 aa8.14□□□□□ -1.11
LIMS1-204ENST00000409441 SMIM20Q8N5G0 67 aa8.14□□□□□ -1.11
LIMS1-204ENST00000409441 KRTAP4-5Q9BYR2 181 aa8.14□□□□□ -1.11
LIMS1-204ENST00000409441 VPS13BQ7Z7G8 4022 aa8.13□□□□□ -1.11
LIMS1-204ENST00000409441 BPY2O14599 106 aa8.13□□□□□ -1.11
LIMS1-204ENST00000409441 ZNF861PO60384 105 aa8.13□□□□□ -1.11
LIMS1-204ENST00000409441 KRTAP13-1Q8IUC0 172 aa8.12□□□□□ -1.11
LIMS1-204ENST00000409441 KRTAP9-9Q9BYP9 154 aa8.11□□□□□ -1.11
LIMS1-204ENST00000409441 KRTAP9-4Q9BYQ2 154 aa8.11□□□□□ -1.11
LIMS1-204ENST00000409441 IGFL1Q6UW32 110 aa8.11□□□□□ -1.11
LIMS1-204ENST00000409441 SPINK6Q6UWN8 80 aa8.11□□□□□ -1.11
LIMS1-204ENST00000409441 HERC2O95714 4834 aa8.1□□□□□ -1.11
LIMS1-204ENST00000409441 TRAV7A0A075B6U4 112 aa8.1□□□□□ -1.11
LIMS1-204ENST00000409441 IGKV4-1P06312 121 aa8.1□□□□□ -1.11
LIMS1-204ENST00000409441 SS18L2Q9UHA2 77 aa8.08□□□□□ -1.12
LIMS1-204ENST00000409441 KRTAP4-8A0A0G2JLE6 195 aa8.06□□□□□ -1.12
LIMS1-204ENST00000409441 Q8N9L7 120 aa8.03□□□□□ -1.12
LIMS1-204ENST00000409441 ZNF706Q9Y5V0 76 aaPredicted RBP8.03□□□□□ -1.12
LIMS1-204ENST00000409441 LINC00483Q53H64 154 aa8.01□□□□□ -1.13
LIMS1-204ENST00000409441 KRTAP19-1Q8IUB9 90 aa8.01□□□□□ -1.13
LIMS1-204ENST00000409441 DSCR10P59022 87 aa8□□□□□ -1.13
LIMS1-204ENST00000409441 A0A087WSZ3 146 aa8□□□□□ -1.13
LIMS1-204ENST00000409441 A0A0G2JQZ4 141 aa8□□□□□ -1.13
LIMS1-204ENST00000409441 TMEM258P61165 79 aa8□□□□□ -1.13
LIMS1-204ENST00000409441 FLG2Q5D862 2391 aaPredicted RBP7.98□□□□□ -1.13
LIMS1-204ENST00000409441 C20orf197Q8N268 126 aa7.98□□□□□ -1.13
LIMS1-204ENST00000409441 KRTAP1-4P0C5Y4 121 aa7.97□□□□□ -1.13
LIMS1-204ENST00000409441 CYSTM1Q9H1C7 97 aa7.97□□□□□ -1.13
LIMS1-204ENST00000409441 ANAPC11Q9NYG5 84 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms