RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 ASB16-AS1Q495Z4 193 aa16.05■□□□□ 0.16
HMGB1-205ENST00000399494 FXYD2P54710 66 aa16.04■□□□□ 0.16
HMGB1-205ENST00000399494 LINC01547P58512 204 aaPredicted RBP16.03■□□□□ 0.16
HMGB1-205ENST00000399494 PRO1854Q9UHT4 67 aa16.02■□□□□ 0.16
HMGB1-205ENST00000399494 Q6ZQY7 126 aa16■□□□□ 0.15
HMGB1-205ENST00000399494 RPS29P62273 56 aaKnown RBP15.99■□□□□ 0.15
HMGB1-205ENST00000399494 Q8N377 158 aa15.99■□□□□ 0.15
HMGB1-205ENST00000399494 KRTAP4-1Q9BYQ7 146 aa15.99■□□□□ 0.15
HMGB1-205ENST00000399494 SMIM29Q86T20 159 aa15.98■□□□□ 0.15
HMGB1-205ENST00000399494 PRO1933Q9H354 126 aa15.96■□□□□ 0.15
HMGB1-205ENST00000399494 H0YGX0 51 aa15.94■□□□□ 0.14
HMGB1-205ENST00000399494 SNCGO76070 127 aa15.94■□□□□ 0.14
HMGB1-205ENST00000399494 HRCT1Q6UXD1 115 aa15.94■□□□□ 0.14
HMGB1-205ENST00000399494 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP15.94■□□□□ 0.14
HMGB1-205ENST00000399494 F8WEM9 126 aa15.92■□□□□ 0.14
HMGB1-205ENST00000399494 SMIM6P0DI80 62 aa15.9■□□□□ 0.14
HMGB1-205ENST00000399494 SEC61BP60468 96 aaKnown RBP15.9■□□□□ 0.14
HMGB1-205ENST00000399494 K7ERJ3 54 aa15.87■□□□□ 0.13
HMGB1-205ENST00000399494 LIMD2Q9BT23 127 aa15.87■□□□□ 0.13
HMGB1-205ENST00000399494 CD164Q04900 197 aa15.85■□□□□ 0.13
HMGB1-205ENST00000399494 LCE2DQ5TA82 110 aaPredicted RBP15.85■□□□□ 0.13
HMGB1-205ENST00000399494 PPDPFLQ8WWR9 84 aa15.84■□□□□ 0.13
HMGB1-205ENST00000399494 FAM218AQ96MZ4 157 aa15.84■□□□□ 0.13
HMGB1-205ENST00000399494 TRIAP1O43715 76 aa15.83■□□□□ 0.12
HMGB1-205ENST00000399494 PSMB2P49721 201 aa15.83■□□□□ 0.12
HMGB1-205ENST00000399494 OCIAD2Q56VL3 154 aa15.81■□□□□ 0.12
HMGB1-205ENST00000399494 SNHG12Q9BXW3 62 aa15.81■□□□□ 0.12
HMGB1-205ENST00000399494 A0A0G2JQZ4 141 aa15.8■□□□□ 0.12
HMGB1-205ENST00000399494 A0A1B0GX51 115 aa15.78■□□□□ 0.12
HMGB1-205ENST00000399494 COX6CP09669 75 aa15.76■□□□□ 0.11
HMGB1-205ENST00000399494 XP32Q5T750 250 aa15.76■□□□□ 0.11
HMGB1-205ENST00000399494 Q6JHZ5 121 aa15.75■□□□□ 0.11
HMGB1-205ENST00000399494 CLEC2BQ92478 149 aa15.74■□□□□ 0.11
HMGB1-205ENST00000399494 GHRHP01286 108 aa15.73■□□□□ 0.11
HMGB1-205ENST00000399494 IGLV8-61A0A075B6I0 122 aa15.71■□□□□ 0.11
HMGB1-205ENST00000399494 LOC105371267A0A1B0GV96 52 aa15.71■□□□□ 0.11
HMGB1-205ENST00000399494 M0R143 59 aa15.7■□□□□ 0.1
HMGB1-205ENST00000399494 DNAL4O96015 105 aa15.7■□□□□ 0.1
HMGB1-205ENST00000399494 TSTD3H0UI37 97 aa15.68■□□□□ 0.1
HMGB1-205ENST00000399494 LCE2CQ5TA81 110 aa15.68■□□□□ 0.1
HMGB1-205ENST00000399494 IGFL1Q6UW32 110 aa15.68■□□□□ 0.1
HMGB1-205ENST00000399494 FABP2P12104 132 aa15.66■□□□□ 0.1
HMGB1-205ENST00000399494 H3BUT2 72 aa15.65■□□□□ 0.1
HMGB1-205ENST00000399494 NDUFV3P56181 108 aaKnown RBP15.65■□□□□ 0.1
HMGB1-205ENST00000399494 Q5XG85 94 aa15.65■□□□□ 0.1
HMGB1-205ENST00000399494 SCGB1C2P0DMR2 95 aa15.63■□□□□ 0.09
HMGB1-205ENST00000399494 CRCT1Q9UGL9 99 aa15.63■□□□□ 0.09
HMGB1-205ENST00000399494 TCL1BO95988 128 aa15.62■□□□□ 0.09
HMGB1-205ENST00000399494 ORMDL1Q9P0S3 153 aa15.61■□□□□ 0.09
HMGB1-205ENST00000399494 KRTAP19-2Q3LHN2 52 aa15.58■□□□□ 0.08
HMGB1-205ENST00000399494 TRBV7-7A0A0K0K1E9 115 aa15.57■□□□□ 0.08
HMGB1-205ENST00000399494 FSIP2Q5CZC0 6907 aa15.56■□□□□ 0.08
HMGB1-205ENST00000399494 H3BMG7 143 aa15.56■□□□□ 0.08
HMGB1-205ENST00000399494 H3BQ85 93 aa15.56■□□□□ 0.08
HMGB1-205ENST00000399494 C1orf195Q5TG92 126 aa15.54■□□□□ 0.08
HMGB1-205ENST00000399494 TMEM256-PLSCR3K7ERE1 68 aa15.51■□□□□ 0.07
HMGB1-205ENST00000399494 TRACP01848 142 aa15.51■□□□□ 0.07
HMGB1-205ENST00000399494 LST1O00453 97 aa15.5■□□□□ 0.07
HMGB1-205ENST00000399494 BATFQ16520 125 aa15.49■□□□□ 0.07
HMGB1-205ENST00000399494 MT1HP80294 61 aa15.48■□□□□ 0.07
HMGB1-205ENST00000399494 PCOTHQ58A44 107 aa15.48■□□□□ 0.07
HMGB1-205ENST00000399494 TEN1Q86WV5 123 aa15.46■□□□□ 0.07
HMGB1-205ENST00000399494 NAA38Q9BRA0 125 aaKnown RBP15.46■□□□□ 0.07
HMGB1-205ENST00000399494 A0A1B0GV72 72 aa15.45■□□□□ 0.06
HMGB1-205ENST00000399494 C9orf92A6NGG3 77 aa15.45■□□□□ 0.06
HMGB1-205ENST00000399494 Q6Q795 121 aa15.45■□□□□ 0.06
HMGB1-205ENST00000399494 SS18L2Q9UHA2 77 aa15.42■□□□□ 0.06
HMGB1-205ENST00000399494 UBE2V1Q13404 147 aa15.4■□□□□ 0.06
HMGB1-205ENST00000399494 ANKRD29Q8N6D5 301 aa15.4■□□□□ 0.06
HMGB1-205ENST00000399494 ATXN8Q156A1 80 aa15.38■□□□□ 0.05
HMGB1-205ENST00000399494 LYRM7Q5U5X0 104 aa15.36■□□□□ 0.05
HMGB1-205ENST00000399494 A0A087WSZ3 146 aa15.35■□□□□ 0.05
HMGB1-205ENST00000399494 BAALC-AS2P0C853 105 aa15.33■□□□□ 0.04
HMGB1-205ENST00000399494 A0A1W2PNM2 257 aa15.32■□□□□ 0.04
HMGB1-205ENST00000399494 LORP23490 312 aaPredicted RBP15.3■□□□□ 0.04
HMGB1-205ENST00000399494 KRTAP10-6P60371 365 aaPredicted RBP15.27■□□□□ 0.04
HMGB1-205ENST00000399494 RBM3P98179 157 aaKnown RBP15.27■□□□□ 0.04
HMGB1-205ENST00000399494 TRBV7-4A0A0J9YYF1 115 aa15.26■□□□□ 0.03
HMGB1-205ENST00000399494 CCKP06307 115 aa15.26■□□□□ 0.03
HMGB1-205ENST00000399494 DSCR8Q96T75 97 aa15.24■□□□□ 0.03
HMGB1-205ENST00000399494 TRBV20-1A0A075B6N2 111 aa15.23■□□□□ 0.03
HMGB1-205ENST00000399494 VPS25Q9BRG1 176 aa15.22■□□□□ 0.03
HMGB1-205ENST00000399494 C9orf118A6NHY6 69 aa15.21■□□□□ 0.03
HMGB1-205ENST00000399494 TAX1BP3O14907 124 aa15.19■□□□□ 0.02
HMGB1-205ENST00000399494 C9JAW5 83 aa15.16■□□□□ 0.02
HMGB1-205ENST00000399494 Q96NJ1 140 aa15.15■□□□□ 0.02
HMGB1-205ENST00000399494 A0A1W2PPM0 123 aa15.14■□□□□ 0.01
HMGB1-205ENST00000399494 JMJD7-PLA2G4BH0Y9G9 81 aa15.14■□□□□ 0.01
HMGB1-205ENST00000399494 RPL37P61927 97 aaKnown RBP15.13■□□□□ 0.01
HMGB1-205ENST00000399494 OBSCN-AS1Q96MR7 158 aa15.13■□□□□ 0.01
HMGB1-205ENST00000399494 M0R2T5 61 aa15.12■□□□□ 0.01
HMGB1-205ENST00000399494 SIGMAR1Q99720 223 aa15.12■□□□□ 0.01
HMGB1-205ENST00000399494 FLGP20930 4061 aaPredicted RBP15.07■□□□□ 0
HMGB1-205ENST00000399494 IGKV4-1P06312 121 aa15.07■□□□□ 0
HMGB1-205ENST00000399494 COX6B2Q6YFQ2 88 aa15.05■□□□□ -0
HMGB1-205ENST00000399494 C21orf62-AS1Q17RA5 79 aa15.04■□□□□ -0
HMGB1-205ENST00000399494 COL5A1-AS1Q5SY13 56 aa15.02■□□□□ -0
HMGB1-205ENST00000399494 LOC110117498A0A087WWA1 95 aa15.01□□□□□ -0.01
HMGB1-205ENST00000399494 DEFB116Q30KQ4 102 aa15.01□□□□□ -0.01
HMGB1-205ENST00000399494 Q6ZQT0 140 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms