RNA–Protein interactions for RNA: ENST00000394872.6

COL4A6-203, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 5 BASIC

Gene COL4A6, Length 6,750 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-203ENST00000394872 KRTAP10-2P60368 255 aa6.27□□□□□ -1.41
COL4A6-203ENST00000394872 LINC01558Q9Y6Z2 57 aa6.27□□□□□ -1.41
COL4A6-203ENST00000394872 SPRR1BP22528 89 aa6.27□□□□□ -1.41
COL4A6-203ENST00000394872 A0A0A0MQY5 61 aa6.26□□□□□ -1.41
COL4A6-203ENST00000394872 PRRC2CQ9Y520 2896 aaKnown RBP6.26□□□□□ -1.41
COL4A6-203ENST00000394872 R4GN34 69 aa6.26□□□□□ -1.41
COL4A6-203ENST00000394872 LINC00472Q9H8W2 130 aa6.26□□□□□ -1.41
COL4A6-203ENST00000394872 Q5VV11 94 aa6.25□□□□□ -1.41
COL4A6-203ENST00000394872 HELZ2Q9BYK8 2649 aaKnown RBP6.22□□□□□ -1.41
COL4A6-203ENST00000394872 KRTAP26-1Q6PEX3 210 aa6.21□□□□□ -1.41
COL4A6-203ENST00000394872 C5orf42Q9H799 3197 aa6.21□□□□□ -1.42
COL4A6-203ENST00000394872 ATRQ13535 2644 aa6.19□□□□□ -1.42
COL4A6-203ENST00000394872 PCNTO95613 3336 aa6.18□□□□□ -1.42
COL4A6-203ENST00000394872 OXTP01178 125 aa6.17□□□□□ -1.42
COL4A6-203ENST00000394872 MAST4O15021 2626 aa6.16□□□□□ -1.42
COL4A6-203ENST00000394872 CEP350Q5VT06 3117 aa6.15□□□□□ -1.43
COL4A6-203ENST00000394872 M0QZ58 72 aa6.14□□□□□ -1.43
COL4A6-203ENST00000394872 CFAP46Q8IYW2 2715 aa6.14□□□□□ -1.43
COL4A6-203ENST00000394872 PANO1I0J062 215 aa6.13□□□□□ -1.43
COL4A6-203ENST00000394872 RPL37P61927 97 aaKnown RBP6.11□□□□□ -1.43
COL4A6-203ENST00000394872 Q6ZR54 194 aa6.1□□□□□ -1.43
COL4A6-203ENST00000394872 CHD7Q9P2D1 2997 aa6.1□□□□□ -1.43
COL4A6-203ENST00000394872 PLAC4Q8WY50 150 aa6.1□□□□□ -1.43
COL4A6-203ENST00000394872 H1FX-AS1Q4G0G2 97 aa6.09□□□□□ -1.43
COL4A6-203ENST00000394872 ADM2Q7Z4H4 148 aa6.09□□□□□ -1.43
COL4A6-203ENST00000394872 A0A087X002 238 aa6.08□□□□□ -1.44
COL4A6-203ENST00000394872 ROMO1P60602 79 aa6.08□□□□□ -1.44
COL4A6-203ENST00000394872 KRTAP4-16G5E9R7 235 aaPredicted RBP6.04□□□□□ -1.44
COL4A6-203ENST00000394872 KRTAP16-1A8MUX0 517 aa6.03□□□□□ -1.44
COL4A6-203ENST00000394872 SPATA8Q6RVD6 105 aa6.01□□□□□ -1.45
COL4A6-203ENST00000394872 ASB16-AS1Q495Z4 193 aa6□□□□□ -1.45
COL4A6-203ENST00000394872 STAB1Q9NY15 2570 aa5.98□□□□□ -1.45
COL4A6-203ENST00000394872 TEX15Q9BXT5 2789 aa5.97□□□□□ -1.45
COL4A6-203ENST00000394872 KRTAP29-1A8MX34 341 aaPredicted RBP5.97□□□□□ -1.45
COL4A6-203ENST00000394872 NOTCH2NLQ7Z3S9 236 aa5.95□□□□□ -1.46
COL4A6-203ENST00000394872 KRTAP11-1Q8IUC1 163 aa5.95□□□□□ -1.46
COL4A6-203ENST00000394872 CHD9Q3L8U1 2897 aa5.95□□□□□ -1.46
COL4A6-203ENST00000394872 RPS29P62273 56 aaKnown RBP5.94□□□□□ -1.46
COL4A6-203ENST00000394872 Q6ZRN7 208 aaPredicted RBP5.94□□□□□ -1.46
COL4A6-203ENST00000394872 CHD6Q8TD26 2715 aa5.94□□□□□ -1.46
COL4A6-203ENST00000394872 AKAP13Q12802 2813 aa5.93□□□□□ -1.46
COL4A6-203ENST00000394872 MGAQ8IWI9 3026 aa5.92□□□□□ -1.46
COL4A6-203ENST00000394872 FLG2Q5D862 2391 aaPredicted RBP5.92□□□□□ -1.46
COL4A6-203ENST00000394872 CENPEQ02224 2701 aa5.92□□□□□ -1.46
COL4A6-203ENST00000394872 A6NN06 94 aa5.91□□□□□ -1.46
COL4A6-203ENST00000394872 NBEAL1Q6ZS30 2694 aa5.91□□□□□ -1.46
COL4A6-203ENST00000394872 CFAP54Q96N23 3096 aa5.9□□□□□ -1.46
COL4A6-203ENST00000394872 MKI67P46013 3256 aaKnown RBP5.9□□□□□ -1.46
COL4A6-203ENST00000394872 TEP1Q99973 2627 aaKnown RBP5.9□□□□□ -1.46
COL4A6-203ENST00000394872 A8MUU9 505 aa5.89□□□□□ -1.47
COL4A6-203ENST00000394872 HTTP42858 3142 aa5.88□□□□□ -1.47
COL4A6-203ENST00000394872 KRTAP25-1Q3LHN0 102 aa5.88□□□□□ -1.47
COL4A6-203ENST00000394872 KRTAP13-2Q52LG2 175 aa5.86□□□□□ -1.47
COL4A6-203ENST00000394872 KRTAP7-1Q8IUC3 87 aa5.85□□□□□ -1.47
COL4A6-203ENST00000394872 C20orf166-AS1Q96NR2 134 aa5.85□□□□□ -1.47
COL4A6-203ENST00000394872 DNAH14Q0VDD8 3507 aa5.84□□□□□ -1.47
COL4A6-203ENST00000394872 BRCA2P51587 3418 aa5.84□□□□□ -1.48
COL4A6-203ENST00000394872 COL6A5A8TX70 2615 aa5.83□□□□□ -1.48
COL4A6-203ENST00000394872 RANBP2P49792 3224 aaKnown RBP5.83□□□□□ -1.48
COL4A6-203ENST00000394872 UNC79Q9P2D8 2635 aa5.82□□□□□ -1.48
COL4A6-203ENST00000394872 BAHCC1Q9P281 2608 aa5.82□□□□□ -1.48
COL4A6-203ENST00000394872 A0A0C4DFX4 3053 aa5.82□□□□□ -1.48
COL4A6-203ENST00000394872 SETXQ7Z333 2677 aaKnown RBP5.82□□□□□ -1.48
COL4A6-203ENST00000394872 NDUFAF8A1L188 74 aa5.82□□□□□ -1.48
COL4A6-203ENST00000394872 A8MU10 97 aa5.81□□□□□ -1.48
COL4A6-203ENST00000394872 TRANK1O15050 2925 aa5.81□□□□□ -1.48
COL4A6-203ENST00000394872 GCN1Q92616 2671 aaKnown RBP5.81□□□□□ -1.48
COL4A6-203ENST00000394872 XIRP2A4UGR9 3374 aa5.81□□□□□ -1.48
COL4A6-203ENST00000394872 LAMA3Q16787 3333 aa5.81□□□□□ -1.48
COL4A6-203ENST00000394872 KRTAP21-3Q3LHN1 58 aa5.81□□□□□ -1.48
COL4A6-203ENST00000394872 ZNF292O60281 2723 aa5.8□□□□□ -1.48
COL4A6-203ENST00000394872 DMBT1Q9UGM3 2413 aaPredicted RBP5.8□□□□□ -1.48
COL4A6-203ENST00000394872 KRTAP13-1Q8IUC0 172 aa5.8□□□□□ -1.48
COL4A6-203ENST00000394872 WDFY4Q6ZS81 3184 aa5.76□□□□□ -1.49
COL4A6-203ENST00000394872 TRIOO75962 3097 aa5.74□□□□□ -1.49
COL4A6-203ENST00000394872 IGSF10Q6WRI0 2623 aa5.73□□□□□ -1.49
COL4A6-203ENST00000394872 NOTCH1P46531 2555 aa5.72□□□□□ -1.49
COL4A6-203ENST00000394872 NBEAL2Q6ZNJ1 2754 aa5.71□□□□□ -1.49
COL4A6-203ENST00000394872 ITPR2Q14571 2701 aa5.71□□□□□ -1.49
COL4A6-203ENST00000394872 PRUNE2Q8WUY3 3088 aa5.71□□□□□ -1.5
COL4A6-203ENST00000394872 CELSR3Q9NYQ7 3312 aa5.71□□□□□ -1.5
COL4A6-203ENST00000394872 LAMA2P24043 3122 aaKnown RBP5.7□□□□□ -1.5
COL4A6-203ENST00000394872 DSPP15924 2871 aaKnown RBP5.69□□□□□ -1.5
COL4A6-203ENST00000394872 TNP1P09430 55 aa5.68□□□□□ -1.5
COL4A6-203ENST00000394872 SZT2Q5T011 3432 aa5.68□□□□□ -1.5
COL4A6-203ENST00000394872 FRYQ5TBA9 3013 aa5.67□□□□□ -1.5
COL4A6-203ENST00000394872 CDH23Q9H251 3354 aa5.66□□□□□ -1.5
COL4A6-203ENST00000394872 KMT2BQ9UMN6 2715 aaPredicted RBP5.65□□□□□ -1.5
COL4A6-203ENST00000394872 UNC80Q8N2C7 3258 aa5.63□□□□□ -1.51
COL4A6-203ENST00000394872 STAB2Q8WWQ8 2551 aa5.62□□□□□ -1.51
COL4A6-203ENST00000394872 NSD1Q96L73 2696 aaPredicted RBP5.62□□□□□ -1.51
COL4A6-203ENST00000394872 UBR5O95071 2799 aaPredicted RBP5.62□□□□□ -1.51
COL4A6-203ENST00000394872 A0A1B0GVY2 172 aa5.61□□□□□ -1.51
COL4A6-203ENST00000394872 XP32Q5T750 250 aa5.59□□□□□ -1.51
COL4A6-203ENST00000394872 C10orf95Q9H7T3 257 aa5.58□□□□□ -1.52
COL4A6-203ENST00000394872 VPS13AQ96RL7 3174 aa5.58□□□□□ -1.52
COL4A6-203ENST00000394872 KRTAP10-8P60410 259 aa5.57□□□□□ -1.52
COL4A6-203ENST00000394872 MAP1AP78559 2803 aaPredicted RBP5.56□□□□□ -1.52
COL4A6-203ENST00000394872 KRTAP1-4P0C5Y4 121 aa5.55□□□□□ -1.52
COL4A6-203ENST00000394872 REV3LO60673 3130 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms