RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 Q8NBF4 154 aa15.52■□□□□ 0.08
SHOX2-201ENST00000389589 A0A1W2PNM2 257 aa15.52■□□□□ 0.07
SHOX2-201ENST00000389589 CXCL6P80162 114 aa15.52■□□□□ 0.07
SHOX2-201ENST00000389589 HIST1H4AP62805 103 aaKnown RBP15.5■□□□□ 0.07
SHOX2-201ENST00000389589 KRTAP10-2P60368 255 aa15.49■□□□□ 0.07
SHOX2-201ENST00000389589 SPRR4Q96PI1 79 aa15.48■□□□□ 0.07
SHOX2-201ENST00000389589 PSORS1C2Q9UIG4 136 aa15.48■□□□□ 0.07
SHOX2-201ENST00000389589 NREPQ16612 68 aa15.47■□□□□ 0.07
SHOX2-201ENST00000389589 A0A087WVE0 104 aa15.45■□□□□ 0.06
SHOX2-201ENST00000389589 IGFL1Q6UW32 110 aa15.44■□□□□ 0.06
SHOX2-201ENST00000389589 HYDINQ4G0P3 5121 aa15.43■□□□□ 0.06
SHOX2-201ENST00000389589 DNAH11Q96DT5 4516 aa15.43■□□□□ 0.06
SHOX2-201ENST00000389589 CRYGAP11844 174 aa15.42■□□□□ 0.06
SHOX2-201ENST00000389589 DNAH8Q96JB1 4490 aa15.4■□□□□ 0.06
SHOX2-201ENST00000389589 ATOX1O00244 68 aa15.39■□□□□ 0.05
SHOX2-201ENST00000389589 ZNF706Q9Y5V0 76 aaPredicted RBP15.39■□□□□ 0.05
SHOX2-201ENST00000389589 DNAH5Q8TE73 4624 aa15.39■□□□□ 0.05
SHOX2-201ENST00000389589 ZNF861PO60384 105 aa15.37■□□□□ 0.05
SHOX2-201ENST00000389589 SRRM2Q9UQ35 2752 aaKnown RBP15.37■□□□□ 0.05
SHOX2-201ENST00000389589 FAM30AQ9NZY2 134 aa15.36■□□□□ 0.05
SHOX2-201ENST00000389589 Q6ZSA8 131 aa15.34■□□□□ 0.05
SHOX2-201ENST00000389589 SCXQ7RTU7 201 aa15.34■□□□□ 0.05
SHOX2-201ENST00000389589 CIRBP-AS1Q8TBR5 109 aa15.34■□□□□ 0.05
SHOX2-201ENST00000389589 LINC00483Q53H64 154 aa15.34■□□□□ 0.05
SHOX2-201ENST00000389589 FAT2Q9NYQ8 4349 aa15.33■□□□□ 0.04
SHOX2-201ENST00000389589 BPY2O14599 106 aa15.33■□□□□ 0.04
SHOX2-201ENST00000389589 PKD1P98161 4303 aa15.32■□□□□ 0.04
SHOX2-201ENST00000389589 A0A0G2JQZ4 141 aa15.31■□□□□ 0.04
SHOX2-201ENST00000389589 KRTAP10-1P60331 282 aa15.31■□□□□ 0.04
SHOX2-201ENST00000389589 LCE6AA0A183 80 aa15.29■□□□□ 0.04
SHOX2-201ENST00000389589 IGLV7-43P04211 117 aa15.29■□□□□ 0.04
SHOX2-201ENST00000389589 RPL37AP61513 92 aaKnown RBP15.24■□□□□ 0.03
SHOX2-201ENST00000389589 CCDC179H3BU77 68 aa15.24■□□□□ 0.03
SHOX2-201ENST00000389589 SACSQ9NZJ4 4579 aa15.23■□□□□ 0.03
SHOX2-201ENST00000389589 A0A087WSZ3 146 aa15.23■□□□□ 0.03
SHOX2-201ENST00000389589 LINC00336Q6ZUF6 198 aa15.22■□□□□ 0.03
SHOX2-201ENST00000389589 IGKV4-1P06312 121 aa15.21■□□□□ 0.03
SHOX2-201ENST00000389589 IGLV9-49A0A0B4J1Y8 123 aa15.2■□□□□ 0.02
SHOX2-201ENST00000389589 C9orf153Q5TBE3 101 aa15.2■□□□□ 0.02
SHOX2-201ENST00000389589 UQCRQO14949 82 aa15.2■□□□□ 0.02
SHOX2-201ENST00000389589 COX7CP15954 63 aa15.2■□□□□ 0.02
SHOX2-201ENST00000389589 SERP2Q8N6R1 65 aa15.19■□□□□ 0.02
SHOX2-201ENST00000389589 Q8N9L7 120 aa15.18■□□□□ 0.02
SHOX2-201ENST00000389589 SMIM20Q8N5G0 67 aa15.13■□□□□ 0.01
SHOX2-201ENST00000389589 DSCR10P59022 87 aa15.12■□□□□ 0.01
SHOX2-201ENST00000389589 MOBPQ13875 183 aa15.09■□□□□ 0.01
SHOX2-201ENST00000389589 ANAPC11Q9NYG5 84 aa15.09■□□□□ 0.01
SHOX2-201ENST00000389589 TRAV7A0A075B6U4 112 aa15.05■□□□□ 0
SHOX2-201ENST00000389589 K7EQZ3 153 aa15.04■□□□□ -0
SHOX2-201ENST00000389589 LINC00472Q9H8W2 130 aa15.02■□□□□ -0
SHOX2-201ENST00000389589 DEFB116Q30KQ4 102 aa15.02□□□□□ -0.01
SHOX2-201ENST00000389589 SS18L2Q9UHA2 77 aa15□□□□□ -0.01
SHOX2-201ENST00000389589 A0A1B0GVY2 172 aa14.99□□□□□ -0.01
SHOX2-201ENST00000389589 LRP1BQ9NZR2 4599 aa14.98□□□□□ -0.01
SHOX2-201ENST00000389589 J3KT08 172 aa14.97□□□□□ -0.01
SHOX2-201ENST00000389589 HRCT1Q6UXD1 115 aa14.96□□□□□ -0.02
SHOX2-201ENST00000389589 SSBP3-AS1Q7Z2R9 100 aa14.95□□□□□ -0.02
SHOX2-201ENST00000389589 A8MWP4 228 aa14.92□□□□□ -0.02
SHOX2-201ENST00000389589 FAM229BQ4G0N7 80 aa14.92□□□□□ -0.02
SHOX2-201ENST00000389589 HCG22E2RYF7 251 aa14.91□□□□□ -0.02
SHOX2-201ENST00000389589 RYR2Q92736 4967 aa14.91□□□□□ -0.02
SHOX2-201ENST00000389589 PKHD1P08F94 4074 aa14.91□□□□□ -0.02
SHOX2-201ENST00000389589 CD164Q04900 197 aa14.89□□□□□ -0.03
SHOX2-201ENST00000389589 PRR15Q8IV56 129 aa14.89□□□□□ -0.03
SHOX2-201ENST00000389589 OCR1Q9BZK8 76 aa14.88□□□□□ -0.03
SHOX2-201ENST00000389589 Q96NJ1 140 aa14.88□□□□□ -0.03
SHOX2-201ENST00000389589 VPS13BQ7Z7G8 4022 aa14.85□□□□□ -0.03
SHOX2-201ENST00000389589 C20orf197Q8N268 126 aa14.84□□□□□ -0.03
SHOX2-201ENST00000389589 NDUFB1O75438 58 aa14.83□□□□□ -0.03
SHOX2-201ENST00000389589 A0A087X002 238 aa14.81□□□□□ -0.04
SHOX2-201ENST00000389589 DYNC1H1Q14204 4646 aaKnown RBP14.81□□□□□ -0.04
SHOX2-201ENST00000389589 KRTAP1-4P0C5Y4 121 aa14.8□□□□□ -0.04
SHOX2-201ENST00000389589 KRTAP13-2Q52LG2 175 aa14.8□□□□□ -0.04
SHOX2-201ENST00000389589 CYSTM1Q9H1C7 97 aa14.78□□□□□ -0.04
SHOX2-201ENST00000389589 SPINK6Q6UWN8 80 aa14.77□□□□□ -0.04
SHOX2-201ENST00000389589 WFDC13Q8IUB5 93 aa14.77□□□□□ -0.04
SHOX2-201ENST00000389589 KLKP1Q107X0 134 aa14.77□□□□□ -0.05
SHOX2-201ENST00000389589 KRTAP29-1A8MX34 341 aaPredicted RBP14.75□□□□□ -0.05
SHOX2-201ENST00000389589 CASC2Q6XLA1 102 aa14.75□□□□□ -0.05
SHOX2-201ENST00000389589 KMT2CQ8NEZ4 4911 aaKnown RBP14.74□□□□□ -0.05
SHOX2-201ENST00000389589 CDK2AP2O75956 126 aa14.72□□□□□ -0.05
SHOX2-201ENST00000389589 ASB16-AS1Q495Z4 193 aa14.72□□□□□ -0.05
SHOX2-201ENST00000389589 TMEM254Q8TBM7 123 aa14.71□□□□□ -0.05
SHOX2-201ENST00000389589 PLA2G1BP04054 148 aaKnown RBP14.7□□□□□ -0.06
SHOX2-201ENST00000389589 MMP24-AS1A0A0U1RRL7 71 aa14.69□□□□□ -0.06
SHOX2-201ENST00000389589 SMR3BP02814 79 aaPredicted RBP14.69□□□□□ -0.06
SHOX2-201ENST00000389589 TMEM258P61165 79 aa14.69□□□□□ -0.06
SHOX2-201ENST00000389589 A0A1B0GVX0 72 aa14.67□□□□□ -0.06
SHOX2-201ENST00000389589 SNURFQ9Y675 71 aa14.67□□□□□ -0.06
SHOX2-201ENST00000389589 Q5XG85 94 aa14.65□□□□□ -0.06
SHOX2-201ENST00000389589 APOBP04114 4563 aaKnown RBP14.65□□□□□ -0.06
SHOX2-201ENST00000389589 hDV103S1A0JD37 113 aa14.63□□□□□ -0.07
SHOX2-201ENST00000389589 NDUFC1O43677 76 aa14.63□□□□□ -0.07
SHOX2-201ENST00000389589 C8orf17Q9NRJ1 99 aa14.63□□□□□ -0.07
SHOX2-201ENST00000389589 A0A0U1RQV1 116 aa14.62□□□□□ -0.07
SHOX2-201ENST00000389589 C5orf47Q569G3 176 aa14.62□□□□□ -0.07
SHOX2-201ENST00000389589 IGHV6-1A0A0B4J1U7 121 aa14.61□□□□□ -0.07
SHOX2-201ENST00000389589 TYMSOSQ8TAI1 123 aa14.61□□□□□ -0.07
SHOX2-201ENST00000389589 H7BZZ5 65 aa14.6□□□□□ -0.07
SHOX2-201ENST00000389589 LIMD2Q9BT23 127 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms