RNA–Protein interactions for RNA: ENST00000375254.7

UBR4-204, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBR4, Length 15,906 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-204ENST00000375254 C9orf92A6NGG3 77 aa3.94□□□□□ -1.78
UBR4-204ENST00000375254 CASC10Q5T4H9 136 aa3.93□□□□□ -1.78
UBR4-204ENST00000375254 Q8NDZ9 215 aa3.93□□□□□ -1.78
UBR4-204ENST00000375254 PLAC8Q9NZF1 115 aa3.93□□□□□ -1.78
UBR4-204ENST00000375254 KRTAP4-16G5E9R7 235 aaPredicted RBP3.92□□□□□ -1.78
UBR4-204ENST00000375254 Q6ZSA8 131 aa3.91□□□□□ -1.78
UBR4-204ENST00000375254 HECTD1Q9ULT8 2610 aa3.91□□□□□ -1.78
UBR4-204ENST00000375254 PCNTO95613 3336 aa3.9□□□□□ -1.79
UBR4-204ENST00000375254 TEP1Q99973 2627 aaKnown RBP3.89□□□□□ -1.79
UBR4-204ENST00000375254 ATRQ13535 2644 aa3.89□□□□□ -1.79
UBR4-204ENST00000375254 NBEAL1Q6ZS30 2694 aa3.87□□□□□ -1.79
UBR4-204ENST00000375254 A8MU10 97 aa3.87□□□□□ -1.79
UBR4-204ENST00000375254 MAST4O15021 2626 aa3.86□□□□□ -1.79
UBR4-204ENST00000375254 RAI1Q7Z5J4 1906 aaPredicted RBP3.86□□□□□ -1.79
UBR4-204ENST00000375254 K7EIL1 84 aa3.86□□□□□ -1.79
UBR4-204ENST00000375254 ANKRD11Q6UB99 2663 aaPredicted RBP3.86□□□□□ -1.79
UBR4-204ENST00000375254 KIAA1549LQ6ZVL6 1849 aa3.86□□□□□ -1.79
UBR4-204ENST00000375254 RPS29P62273 56 aaKnown RBP3.85□□□□□ -1.79
UBR4-204ENST00000375254 LTBP2Q14767 1821 aa3.85□□□□□ -1.79
UBR4-204ENST00000375254 CEP295Q9C0D2 2601 aa3.85□□□□□ -1.79
UBR4-204ENST00000375254 P0C880 135 aa3.85□□□□□ -1.79
UBR4-204ENST00000375254 KRTAP10-9P60411 292 aa3.85□□□□□ -1.79
UBR4-204ENST00000375254 BAHCC1Q9P281 2608 aa3.84□□□□□ -1.79
UBR4-204ENST00000375254 WWC2-AS2Q96NR7 200 aa3.84□□□□□ -1.79
UBR4-204ENST00000375254 FREM2Q5SZK8 3169 aa3.83□□□□□ -1.8
UBR4-204ENST00000375254 EP400Q96L91 3159 aa3.83□□□□□ -1.8
UBR4-204ENST00000375254 PRRC2CQ9Y520 2896 aaKnown RBP3.83□□□□□ -1.8
UBR4-204ENST00000375254 HELZ2Q9BYK8 2649 aaKnown RBP3.82□□□□□ -1.8
UBR4-204ENST00000375254 SMR3AQ99954 134 aa3.8□□□□□ -1.8
UBR4-204ENST00000375254 IGSF10Q6WRI0 2623 aa3.8□□□□□ -1.8
UBR4-204ENST00000375254 NOTCH1P46531 2555 aa3.8□□□□□ -1.8
UBR4-204ENST00000375254 CENPEQ02224 2701 aa3.79□□□□□ -1.8
UBR4-204ENST00000375254 TNP1P09430 55 aa3.78□□□□□ -1.8
UBR4-204ENST00000375254 KRTAP10-11P60412 298 aa3.78□□□□□ -1.8
UBR4-204ENST00000375254 CHD6Q8TD26 2715 aa3.77□□□□□ -1.81
UBR4-204ENST00000375254 UNC79Q9P2D8 2635 aa3.76□□□□□ -1.81
UBR4-204ENST00000375254 UTRNP46939 3433 aa3.76□□□□□ -1.81
UBR4-204ENST00000375254 J3QL48 77 aa3.74□□□□□ -1.81
UBR4-204ENST00000375254 COL6A5A8TX70 2615 aa3.73□□□□□ -1.81
UBR4-204ENST00000375254 HTTP42858 3142 aa3.72□□□□□ -1.81
UBR4-204ENST00000375254 KRTAP24-1Q3LI83 254 aa3.72□□□□□ -1.81
UBR4-204ENST00000375254 UNC80Q8N2C7 3258 aa3.72□□□□□ -1.81
UBR4-204ENST00000375254 LAMA2P24043 3122 aaKnown RBP3.71□□□□□ -1.81
UBR4-204ENST00000375254 MUC22E2RYF6 1773 aaPredicted RBP3.71□□□□□ -1.82
UBR4-204ENST00000375254 H0YAA0 97 aa3.69□□□□□ -1.82
UBR4-204ENST00000375254 INE1O15225 51 aa3.69□□□□□ -1.82
UBR4-204ENST00000375254 CHD7Q9P2D1 2997 aa3.69□□□□□ -1.82
UBR4-204ENST00000375254 CFAP54Q96N23 3096 aa3.69□□□□□ -1.82
UBR4-204ENST00000375254 C10orf95Q9H7T3 257 aa3.69□□□□□ -1.82
UBR4-204ENST00000375254 RANBP2P49792 3224 aaKnown RBP3.69□□□□□ -1.82
UBR4-204ENST00000375254 FLNBO75369 2602 aaKnown RBP3.68□□□□□ -1.82
UBR4-204ENST00000375254 DNAH12Q6ZR08 3092 aa3.68□□□□□ -1.82
UBR4-204ENST00000375254 PCSK5Q92824 1860 aa3.67□□□□□ -1.82
UBR4-204ENST00000375254 ITPR3Q14573 2671 aa3.67□□□□□ -1.82
UBR4-204ENST00000375254 PRUNE2Q8WUY3 3088 aa3.65□□□□□ -1.82
UBR4-204ENST00000375254 COL27A1Q8IZC6 1860 aaPredicted RBP3.65□□□□□ -1.82
UBR4-204ENST00000375254 KRTAP10-3P60369 221 aa3.65□□□□□ -1.82
UBR4-204ENST00000375254 NSD1Q96L73 2696 aaPredicted RBP3.65□□□□□ -1.83
UBR4-204ENST00000375254 COL4A2P08572 1712 aa3.65□□□□□ -1.83
UBR4-204ENST00000375254 KRTAP13-1Q8IUC0 172 aa3.64□□□□□ -1.83
UBR4-204ENST00000375254 MAP1AP78559 2803 aaPredicted RBP3.63□□□□□ -1.83
UBR4-204ENST00000375254 CHD9Q3L8U1 2897 aa3.63□□□□□ -1.83
UBR4-204ENST00000375254 LAMA3Q16787 3333 aa3.63□□□□□ -1.83
UBR4-204ENST00000375254 CDH23Q9H251 3354 aa3.6□□□□□ -1.83
UBR4-204ENST00000375254 SMR3BP02814 79 aaPredicted RBP3.6□□□□□ -1.83
UBR4-204ENST00000375254 Q6ZRN7 208 aaPredicted RBP3.59□□□□□ -1.83
UBR4-204ENST00000375254 MKI67P46013 3256 aaKnown RBP3.59□□□□□ -1.83
UBR4-204ENST00000375254 M0R2T5 61 aa3.59□□□□□ -1.83
UBR4-204ENST00000375254 BRCA2P51587 3418 aa3.59□□□□□ -1.84
UBR4-204ENST00000375254 NBEAL2Q6ZNJ1 2754 aa3.58□□□□□ -1.84
UBR4-204ENST00000375254 SETXQ7Z333 2677 aaKnown RBP3.58□□□□□ -1.84
UBR4-204ENST00000375254 CFAP46Q8IYW2 2715 aa3.58□□□□□ -1.84
UBR4-204ENST00000375254 UBR5O95071 2799 aaPredicted RBP3.56□□□□□ -1.84
UBR4-204ENST00000375254 UTP20O75691 2785 aaKnown RBP3.56□□□□□ -1.84
UBR4-204ENST00000375254 KRTAP7-1Q8IUC3 87 aa3.56□□□□□ -1.84
UBR4-204ENST00000375254 C5orf42Q9H799 3197 aa3.56□□□□□ -1.84
UBR4-204ENST00000375254 KRTAP10-8P60410 259 aa3.55□□□□□ -1.84
UBR4-204ENST00000375254 ITPR1Q14643 2758 aa3.55□□□□□ -1.84
UBR4-204ENST00000375254 PRO2289Q9P1D8 64 aa3.55□□□□□ -1.84
UBR4-204ENST00000375254 XIRP2A4UGR9 3374 aa3.54□□□□□ -1.84
UBR4-204ENST00000375254 DMXL2Q8TDJ6 3036 aa3.54□□□□□ -1.84
UBR4-204ENST00000375254 KRTAP15-1Q3LI76 137 aa3.54□□□□□ -1.84
UBR4-204ENST00000375254 ASH1LQ9NR48 2969 aaKnown RBP3.54□□□□□ -1.84
UBR4-204ENST00000375254 WDFY4Q6ZS81 3184 aa3.53□□□□□ -1.84
UBR4-204ENST00000375254 NBEAQ8NFP9 2946 aa3.52□□□□□ -1.85
UBR4-204ENST00000375254 KRTAP1-3Q8IUG1 177 aa3.52□□□□□ -1.85
UBR4-204ENST00000375254 MGAQ8IWI9 3026 aa3.5□□□□□ -1.85
UBR4-204ENST00000375254 FRYQ5TBA9 3013 aa3.5□□□□□ -1.85
UBR4-204ENST00000375254 TEX15Q9BXT5 2789 aa3.49□□□□□ -1.85
UBR4-204ENST00000375254 VCANP13611 3396 aa3.49□□□□□ -1.85
UBR4-204ENST00000375254 REV3LO60673 3130 aa3.49□□□□□ -1.85
UBR4-204ENST00000375254 KRTAP1-5Q9BYS1 174 aa3.48□□□□□ -1.85
UBR4-204ENST00000375254 KRTAP23-1A1A580 65 aa3.48□□□□□ -1.85
UBR4-204ENST00000375254 KRTAP10-1P60331 282 aa3.48□□□□□ -1.85
UBR4-204ENST00000375254 TRIOO75962 3097 aa3.48□□□□□ -1.85
UBR4-204ENST00000375254 CELSR2Q9HCU4 2923 aa3.47□□□□□ -1.85
UBR4-204ENST00000375254 KRTAP1-1Q07627 177 aa3.47□□□□□ -1.85
UBR4-204ENST00000375254 GCN1Q92616 2671 aaKnown RBP3.46□□□□□ -1.85
UBR4-204ENST00000375254 Q5VSD8 79 aa3.46□□□□□ -1.86
UBR4-204ENST00000375254 DSPP15924 2871 aaKnown RBP3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms