RNA–Protein interactions for RNA: ENST00000372195.5

RAPGEF1-203, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 1 (best) BASIC

Gene RAPGEF1, Length 6,256 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-203ENST00000372195 LINC00472Q9H8W2 130 aa14.51□□□□□ -0.09
RAPGEF1-203ENST00000372195 EPG5Q9HCE0 2579 aa14.45□□□□□ -0.1
RAPGEF1-203ENST00000372195 MGAM2Q2M2H8 2515 aa14.44□□□□□ -0.1
RAPGEF1-203ENST00000372195 DMAC1Q96GE9 116 aa14.4□□□□□ -0.1
RAPGEF1-203ENST00000372195 FLNAP21333 2647 aaKnown RBP14.39□□□□□ -0.11
RAPGEF1-203ENST00000372195 BRCA2P51587 3418 aa14.39□□□□□ -0.11
RAPGEF1-203ENST00000372195 LINC00483Q53H64 154 aa14.39□□□□□ -0.11
RAPGEF1-203ENST00000372195 KRTAP26-1Q6PEX3 210 aa14.39□□□□□ -0.11
RAPGEF1-203ENST00000372195 HTTP42858 3142 aa14.37□□□□□ -0.11
RAPGEF1-203ENST00000372195 LAMA3Q16787 3333 aa14.36□□□□□ -0.11
RAPGEF1-203ENST00000372195 ITPR3Q14573 2671 aa14.32□□□□□ -0.12
RAPGEF1-203ENST00000372195 SPRR1BP22528 89 aa14.31□□□□□ -0.12
RAPGEF1-203ENST00000372195 LAMA2P24043 3122 aaKnown RBP14.29□□□□□ -0.12
RAPGEF1-203ENST00000372195 KRTAP10-2P60368 255 aa14.29□□□□□ -0.12
RAPGEF1-203ENST00000372195 KRTAP10-1P60331 282 aa14.26□□□□□ -0.13
RAPGEF1-203ENST00000372195 XIRP2A4UGR9 3374 aa14.26□□□□□ -0.13
RAPGEF1-203ENST00000372195 CHD9Q3L8U1 2897 aa14.26□□□□□ -0.13
RAPGEF1-203ENST00000372195 PANO1I0J062 215 aa14.24□□□□□ -0.13
RAPGEF1-203ENST00000372195 RANBP2P49792 3224 aaKnown RBP14.24□□□□□ -0.13
RAPGEF1-203ENST00000372195 TRIOO75962 3097 aa14.21□□□□□ -0.13
RAPGEF1-203ENST00000372195 R4GN34 69 aa14.2□□□□□ -0.14
RAPGEF1-203ENST00000372195 Q5VSD8 79 aa14.18□□□□□ -0.14
RAPGEF1-203ENST00000372195 FLNBO75369 2602 aaKnown RBP14.16□□□□□ -0.14
RAPGEF1-203ENST00000372195 ATRQ13535 2644 aa14.16□□□□□ -0.14
RAPGEF1-203ENST00000372195 SPATA8Q6RVD6 105 aa14.15□□□□□ -0.14
RAPGEF1-203ENST00000372195 MGAQ8IWI9 3026 aa14.14□□□□□ -0.15
RAPGEF1-203ENST00000372195 UNC80Q8N2C7 3258 aa14.14□□□□□ -0.15
RAPGEF1-203ENST00000372195 ROMO1P60602 79 aa14.12□□□□□ -0.15
RAPGEF1-203ENST00000372195 CELSR3Q9NYQ7 3312 aa14.1□□□□□ -0.15
RAPGEF1-203ENST00000372195 H1FX-AS1Q4G0G2 97 aa14.1□□□□□ -0.15
RAPGEF1-203ENST00000372195 RPL37P61927 97 aaKnown RBP14.06□□□□□ -0.16
RAPGEF1-203ENST00000372195 Q6ZR54 194 aa14.05□□□□□ -0.16
RAPGEF1-203ENST00000372195 CDH23Q9H251 3354 aa14.05□□□□□ -0.16
RAPGEF1-203ENST00000372195 KRTAP4-16G5E9R7 235 aaPredicted RBP14.04□□□□□ -0.16
RAPGEF1-203ENST00000372195 PRUNE2Q8WUY3 3088 aa14.04□□□□□ -0.16
RAPGEF1-203ENST00000372195 A0A087X002 238 aa14.04□□□□□ -0.16
RAPGEF1-203ENST00000372195 NOTCH2NLQ7Z3S9 236 aa14.04□□□□□ -0.16
RAPGEF1-203ENST00000372195 DNAH14Q0VDD8 3507 aa14.03□□□□□ -0.16
RAPGEF1-203ENST00000372195 M0QZ58 72 aa14.03□□□□□ -0.16
RAPGEF1-203ENST00000372195 A0A0A0MQY5 61 aa13.99□□□□□ -0.17
RAPGEF1-203ENST00000372195 WDFY4Q6ZS81 3184 aa13.99□□□□□ -0.17
RAPGEF1-203ENST00000372195 ADM2Q7Z4H4 148 aa13.99□□□□□ -0.17
RAPGEF1-203ENST00000372195 CFAP46Q8IYW2 2715 aa13.96□□□□□ -0.17
RAPGEF1-203ENST00000372195 KRTAP29-1A8MX34 341 aaPredicted RBP13.96□□□□□ -0.18
RAPGEF1-203ENST00000372195 KRTAP11-1Q8IUC1 163 aa13.95□□□□□ -0.18
RAPGEF1-203ENST00000372195 FREM2Q5SZK8 3169 aa13.95□□□□□ -0.18
RAPGEF1-203ENST00000372195 MAST4O15021 2626 aa13.94□□□□□ -0.18
RAPGEF1-203ENST00000372195 CHD6Q8TD26 2715 aa13.93□□□□□ -0.18
RAPGEF1-203ENST00000372195 SEC61BP60468 96 aaKnown RBP13.92□□□□□ -0.18
RAPGEF1-203ENST00000372195 HELZ2Q9BYK8 2649 aaKnown RBP13.89□□□□□ -0.19
RAPGEF1-203ENST00000372195 AKAP13Q12802 2813 aa13.87□□□□□ -0.19
RAPGEF1-203ENST00000372195 LCE6AA0A183 80 aa13.84□□□□□ -0.19
RAPGEF1-203ENST00000372195 TRANK1O15050 2925 aa13.82□□□□□ -0.2
RAPGEF1-203ENST00000372195 CENPEQ02224 2701 aa13.8□□□□□ -0.2
RAPGEF1-203ENST00000372195 A8MU10 97 aa13.77□□□□□ -0.2
RAPGEF1-203ENST00000372195 VPS13AQ96RL7 3174 aa13.76□□□□□ -0.21
RAPGEF1-203ENST00000372195 KRTAP7-1Q8IUC3 87 aa13.73□□□□□ -0.21
RAPGEF1-203ENST00000372195 SZT2Q5T011 3432 aa13.73□□□□□ -0.21
RAPGEF1-203ENST00000372195 FRYQ5TBA9 3013 aa13.73□□□□□ -0.21
RAPGEF1-203ENST00000372195 TEX15Q9BXT5 2789 aa13.7□□□□□ -0.22
RAPGEF1-203ENST00000372195 GCN1Q92616 2671 aaKnown RBP13.67□□□□□ -0.22
RAPGEF1-203ENST00000372195 A6NN06 94 aa13.66□□□□□ -0.22
RAPGEF1-203ENST00000372195 VCANP13611 3396 aa13.64□□□□□ -0.23
RAPGEF1-203ENST00000372195 PLAC4Q8WY50 150 aa13.63□□□□□ -0.23
RAPGEF1-203ENST00000372195 NBEAL1Q6ZS30 2694 aa13.6□□□□□ -0.23
RAPGEF1-203ENST00000372195 NBEAL2Q6ZNJ1 2754 aa13.6□□□□□ -0.23
RAPGEF1-203ENST00000372195 COL6A3P12111 3177 aa13.59□□□□□ -0.23
RAPGEF1-203ENST00000372195 KRTAP25-1Q3LHN0 102 aa13.58□□□□□ -0.24
RAPGEF1-203ENST00000372195 ASB16-AS1Q495Z4 193 aa13.56□□□□□ -0.24
RAPGEF1-203ENST00000372195 Q6ZRN7 208 aaPredicted RBP13.53□□□□□ -0.24
RAPGEF1-203ENST00000372195 UNC79Q9P2D8 2635 aa13.51□□□□□ -0.25
RAPGEF1-203ENST00000372195 KRTAP13-2Q52LG2 175 aa13.5□□□□□ -0.25
RAPGEF1-203ENST00000372195 KALRNO60229 2985 aa13.49□□□□□ -0.25
RAPGEF1-203ENST00000372195 LAMA1P25391 3075 aa13.47□□□□□ -0.25
RAPGEF1-203ENST00000372195 TEP1Q99973 2627 aaKnown RBP13.44□□□□□ -0.26
RAPGEF1-203ENST00000372195 A8MUU9 505 aa13.43□□□□□ -0.26
RAPGEF1-203ENST00000372195 KRTAP16-1A8MUX0 517 aa13.42□□□□□ -0.26
RAPGEF1-203ENST00000372195 DSPP15924 2871 aaKnown RBP13.39□□□□□ -0.27
RAPGEF1-203ENST00000372195 MAP1AP78559 2803 aaPredicted RBP13.39□□□□□ -0.27
RAPGEF1-203ENST00000372195 STAB1Q9NY15 2570 aa13.38□□□□□ -0.27
RAPGEF1-203ENST00000372195 FLG2Q5D862 2391 aaPredicted RBP13.37□□□□□ -0.27
RAPGEF1-203ENST00000372195 KRTAP13-1Q8IUC0 172 aa13.35□□□□□ -0.27
RAPGEF1-203ENST00000372195 C20orf166-AS1Q96NR2 134 aa13.35□□□□□ -0.27
RAPGEF1-203ENST00000372195 ZNF292O60281 2723 aa13.34□□□□□ -0.27
RAPGEF1-203ENST00000372195 NDUFAF8A1L188 74 aa13.34□□□□□ -0.27
RAPGEF1-203ENST00000372195 DMBT1Q9UGM3 2413 aaPredicted RBP13.34□□□□□ -0.27
RAPGEF1-203ENST00000372195 REV3LO60673 3130 aa13.29□□□□□ -0.28
RAPGEF1-203ENST00000372195 LRBAP50851 2863 aa13.27□□□□□ -0.28
RAPGEF1-203ENST00000372195 SETXQ7Z333 2677 aaKnown RBP13.26□□□□□ -0.29
RAPGEF1-203ENST00000372195 CFAP47Q6ZTR5 3102 aa13.26□□□□□ -0.29
RAPGEF1-203ENST00000372195 RPS29P62273 56 aaKnown RBP13.25□□□□□ -0.29
RAPGEF1-203ENST00000372195 SPTBN5Q9NRC6 3674 aaKnown RBP13.22□□□□□ -0.29
RAPGEF1-203ENST00000372195 COL6A5A8TX70 2615 aa13.2□□□□□ -0.3
RAPGEF1-203ENST00000372195 NOTCH1P46531 2555 aa13.19□□□□□ -0.3
RAPGEF1-203ENST00000372195 BOD1L1Q8NFC6 3051 aa13.18□□□□□ -0.3
RAPGEF1-203ENST00000372195 IGSF10Q6WRI0 2623 aa13.11□□□□□ -0.31
RAPGEF1-203ENST00000372195 FRYLO94915 3013 aa13.11□□□□□ -0.31
RAPGEF1-203ENST00000372195 SPEGQ15772 3267 aa13.1□□□□□ -0.31
RAPGEF1-203ENST00000372195 DMXL2Q8TDJ6 3036 aa13.09□□□□□ -0.31
RAPGEF1-203ENST00000372195 NBEAQ8NFP9 2946 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms