RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 ST20-AS1Q8NBB2 130 aa5.69□□□□□ -1.5
SYNE1-206ENST00000367253 LINC01558Q9Y6Z2 57 aa5.69□□□□□ -1.5
SYNE1-206ENST00000367253 CHD6Q8TD26 2715 aa5.68□□□□□ -1.5
SYNE1-206ENST00000367253 IGLV6-57P01721 117 aa5.68□□□□□ -1.5
SYNE1-206ENST00000367253 C9orf92A6NGG3 77 aa5.67□□□□□ -1.5
SYNE1-206ENST00000367253 SPINK7P58062 85 aa5.67□□□□□ -1.5
SYNE1-206ENST00000367253 DNAH14Q0VDD8 3507 aa5.67□□□□□ -1.5
SYNE1-206ENST00000367253 FLNAP21333 2647 aaKnown RBP5.66□□□□□ -1.5
SYNE1-206ENST00000367253 SPANXA2-OT1Q8N9U9 137 aa5.66□□□□□ -1.5
SYNE1-206ENST00000367253 ITPR3Q14573 2671 aa5.65□□□□□ -1.51
SYNE1-206ENST00000367253 LITAFQ99732 161 aa5.64□□□□□ -1.51
SYNE1-206ENST00000367253 KLK9Q2XQG4 91 aa5.63□□□□□ -1.51
SYNE1-206ENST00000367253 CFAP54Q96N23 3096 aa5.63□□□□□ -1.51
SYNE1-206ENST00000367253 EYSQ5T1H1 3165 aa5.63□□□□□ -1.51
SYNE1-206ENST00000367253 A0A096LNT2 108 aa5.62□□□□□ -1.51
SYNE1-206ENST00000367253 FLNCQ14315 2725 aa5.62□□□□□ -1.51
SYNE1-206ENST00000367253 VCANP13611 3396 aa5.61□□□□□ -1.51
SYNE1-206ENST00000367253 ROMO1P60602 79 aa5.61□□□□□ -1.51
SYNE1-206ENST00000367253 PLAC4Q8WY50 150 aa5.61□□□□□ -1.51
SYNE1-206ENST00000367253 OBSCN-AS1Q96MR7 158 aa5.61□□□□□ -1.51
SYNE1-206ENST00000367253 ADM2Q7Z4H4 148 aa5.61□□□□□ -1.51
SYNE1-206ENST00000367253 UNC79Q9P2D8 2635 aa5.61□□□□□ -1.51
SYNE1-206ENST00000367253 A0A0D9SG42 100 aa5.61□□□□□ -1.51
SYNE1-206ENST00000367253 CNBPP62633 177 aaKnown RBP5.6□□□□□ -1.51
SYNE1-206ENST00000367253 FAM104AQ969W3 186 aa5.6□□□□□ -1.51
SYNE1-206ENST00000367253 FRYLO94915 3013 aa5.6□□□□□ -1.51
SYNE1-206ENST00000367253 A6NN06 94 aa5.6□□□□□ -1.51
SYNE1-206ENST00000367253 DMXL2Q8TDJ6 3036 aa5.59□□□□□ -1.51
SYNE1-206ENST00000367253 SPTBN5Q9NRC6 3674 aaKnown RBP5.59□□□□□ -1.51
SYNE1-206ENST00000367253 A0A1B0GVX0 72 aa5.58□□□□□ -1.52
SYNE1-206ENST00000367253 ASB16-AS1Q495Z4 193 aa5.57□□□□□ -1.52
SYNE1-206ENST00000367253 DMXL1Q9Y485 3027 aa5.56□□□□□ -1.52
SYNE1-206ENST00000367253 IGFL1Q6UW32 110 aa5.56□□□□□ -1.52
SYNE1-206ENST00000367253 LINC00612Q8N6U2 182 aa5.55□□□□□ -1.52
SYNE1-206ENST00000367253 KCNQ1DNQ9H478 68 aa5.55□□□□□ -1.52
SYNE1-206ENST00000367253 DSCR10P59022 87 aa5.54□□□□□ -1.52
SYNE1-206ENST00000367253 BAHCC1Q9P281 2608 aa5.54□□□□□ -1.52
SYNE1-206ENST00000367253 IGLV5-48A0A075B6I7 105 aa5.53□□□□□ -1.52
SYNE1-206ENST00000367253 LINC00483Q53H64 154 aa5.53□□□□□ -1.52
SYNE1-206ENST00000367253 KRTAP1-3Q8IUG1 177 aa5.53□□□□□ -1.52
SYNE1-206ENST00000367253 KRTAP1-1Q07627 177 aa5.53□□□□□ -1.52
SYNE1-206ENST00000367253 FRYQ5TBA9 3013 aa5.53□□□□□ -1.52
SYNE1-206ENST00000367253 NOTCH1P46531 2555 aa5.53□□□□□ -1.52
SYNE1-206ENST00000367253 KRTAP10-3P60369 221 aa5.51□□□□□ -1.53
SYNE1-206ENST00000367253 C20orf166-AS1Q96NR2 134 aa5.51□□□□□ -1.53
SYNE1-206ENST00000367253 MAP1AP78559 2803 aaPredicted RBP5.5□□□□□ -1.53
SYNE1-206ENST00000367253 Q8N377 158 aa5.5□□□□□ -1.53
SYNE1-206ENST00000367253 SPRR4Q96PI1 79 aa5.5□□□□□ -1.53
SYNE1-206ENST00000367253 WDFY3Q8IZQ1 3526 aa5.49□□□□□ -1.53
SYNE1-206ENST00000367253 FREM2Q5SZK8 3169 aa5.49□□□□□ -1.53
SYNE1-206ENST00000367253 BOD1L1Q8NFC6 3051 aa5.49□□□□□ -1.53
SYNE1-206ENST00000367253 A8MU10 97 aa5.48□□□□□ -1.53
SYNE1-206ENST00000367253 A0A1B0GU33 70 aa5.47□□□□□ -1.53
SYNE1-206ENST00000367253 PRR34Q9NV39 138 aa5.47□□□□□ -1.53
SYNE1-206ENST00000367253 MYO15AQ9UKN7 3530 aa5.47□□□□□ -1.53
SYNE1-206ENST00000367253 ATMQ13315 3056 aa5.47□□□□□ -1.53
SYNE1-206ENST00000367253 KRTAP25-1Q3LHN0 102 aa5.47□□□□□ -1.53
SYNE1-206ENST00000367253 C15orf56Q8N910 161 aa5.47□□□□□ -1.53
SYNE1-206ENST00000367253 FAM168BA1KXE4 195 aa5.46□□□□□ -1.54
SYNE1-206ENST00000367253 TEP1Q99973 2627 aaKnown RBP5.46□□□□□ -1.54
SYNE1-206ENST00000367253 KALRNO60229 2985 aa5.46□□□□□ -1.54
SYNE1-206ENST00000367253 Q8N1X5 172 aa5.45□□□□□ -1.54
SYNE1-206ENST00000367253 ADGRG4Q8IZF6 3080 aa5.45□□□□□ -1.54
SYNE1-206ENST00000367253 CR1P17927 2039 aa5.45□□□□□ -1.54
SYNE1-206ENST00000367253 GCN1Q92616 2671 aaKnown RBP5.45□□□□□ -1.54
SYNE1-206ENST00000367253 CELSR3Q9NYQ7 3312 aa5.45□□□□□ -1.54
SYNE1-206ENST00000367253 A0A1W2PNM2 257 aa5.44□□□□□ -1.54
SYNE1-206ENST00000367253 COL12A1Q99715 3063 aa5.44□□□□□ -1.54
SYNE1-206ENST00000367253 ITPR2Q14571 2701 aa5.43□□□□□ -1.54
SYNE1-206ENST00000367253 PLAC8Q9NZF1 115 aa5.43□□□□□ -1.54
SYNE1-206ENST00000367253 A0A0G2JQZ4 141 aa5.42□□□□□ -1.54
SYNE1-206ENST00000367253 A0A1W2PNN7 141 aa5.42□□□□□ -1.54
SYNE1-206ENST00000367253 TEX15Q9BXT5 2789 aa5.41□□□□□ -1.54
SYNE1-206ENST00000367253 SPEGQ15772 3267 aa5.41□□□□□ -1.54
SYNE1-206ENST00000367253 ITPR1Q14643 2758 aa5.4□□□□□ -1.55
SYNE1-206ENST00000367253 Q6ZR54 194 aa5.39□□□□□ -1.55
SYNE1-206ENST00000367253 MUC3AQ02505 3323 aa5.38□□□□□ -1.55
SYNE1-206ENST00000367253 LOC400499M0QZD8 3231 aa5.38□□□□□ -1.55
SYNE1-206ENST00000367253 ZZEF1O43149 2961 aa5.38□□□□□ -1.55
SYNE1-206ENST00000367253 R4GN34 69 aa5.37□□□□□ -1.55
SYNE1-206ENST00000367253 COL6A5A8TX70 2615 aa5.37□□□□□ -1.55
SYNE1-206ENST00000367253 UBR5O95071 2799 aaPredicted RBP5.37□□□□□ -1.55
SYNE1-206ENST00000367253 NBEAQ8NFP9 2946 aa5.37□□□□□ -1.55
SYNE1-206ENST00000367253 APCP25054 2843 aa5.35□□□□□ -1.55
SYNE1-206ENST00000367253 UTP20O75691 2785 aaKnown RBP5.35□□□□□ -1.55
SYNE1-206ENST00000367253 ANAPC11Q9NYG5 84 aa5.34□□□□□ -1.55
SYNE1-206ENST00000367253 S4R3F8 94 aa5.34□□□□□ -1.55
SYNE1-206ENST00000367253 SPENQ96T58 3664 aaKnown RBP5.33□□□□□ -1.56
SYNE1-206ENST00000367253 NSD1Q96L73 2696 aaPredicted RBP5.3□□□□□ -1.56
SYNE1-206ENST00000367253 DMDP11532 3685 aa5.3□□□□□ -1.56
SYNE1-206ENST00000367253 STAB2Q8WWQ8 2551 aa5.3□□□□□ -1.56
SYNE1-206ENST00000367253 A8MUU9 505 aa5.29□□□□□ -1.56
SYNE1-206ENST00000367253 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-206ENST00000367253 HIVEP1P15822 2718 aa5.29□□□□□ -1.56
SYNE1-206ENST00000367253 KRTAP10-1P60331 282 aa5.29□□□□□ -1.56
SYNE1-206ENST00000367253 LRBAP50851 2863 aa5.29□□□□□ -1.56
SYNE1-206ENST00000367253 SPATA8Q6RVD6 105 aa5.28□□□□□ -1.56
SYNE1-206ENST00000367253 KMT2BQ9UMN6 2715 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-206ENST00000367253 HRNRQ86YZ3 2850 aaPredicted RBP5.28□□□□□ -1.56
SYNE1-206ENST00000367253 ZANQ9Y493 2812 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms