RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 BOD1L1Q8NFC6 3051 aa12.43□□□□□ -0.42
CCDC88B-202ENST00000356786 APLNQ9ULZ1 77 aa12.43□□□□□ -0.42
CCDC88B-202ENST00000356786 IGLV5-37A0A075B6J1 123 aa12.42□□□□□ -0.42
CCDC88B-202ENST00000356786 IGLV7-46A0A075B6I9 117 aa12.41□□□□□ -0.42
CCDC88B-202ENST00000356786 OXTP01178 125 aa12.41□□□□□ -0.42
CCDC88B-202ENST00000356786 SPEGQ15772 3267 aa12.4□□□□□ -0.42
CCDC88B-202ENST00000356786 Q8N9P0 234 aaPredicted RBP12.4□□□□□ -0.42
CCDC88B-202ENST00000356786 Q8NDZ9 215 aa12.4□□□□□ -0.42
CCDC88B-202ENST00000356786 FRYLO94915 3013 aa12.4□□□□□ -0.42
CCDC88B-202ENST00000356786 Q75L30 129 aa12.38□□□□□ -0.43
CCDC88B-202ENST00000356786 PSORS1C2Q9UIG4 136 aa12.38□□□□□ -0.43
CCDC88B-202ENST00000356786 CNBPP62633 177 aaKnown RBP12.36□□□□□ -0.43
CCDC88B-202ENST00000356786 K7EIL1 84 aa12.36□□□□□ -0.43
CCDC88B-202ENST00000356786 NOTCH1P46531 2555 aa12.36□□□□□ -0.43
CCDC88B-202ENST00000356786 Q8N1X5 172 aa12.35□□□□□ -0.43
CCDC88B-202ENST00000356786 FREM2Q5SZK8 3169 aa12.34□□□□□ -0.43
CCDC88B-202ENST00000356786 A0A087WTM6 91 aa12.34□□□□□ -0.43
CCDC88B-202ENST00000356786 DMXL2Q8TDJ6 3036 aa12.34□□□□□ -0.43
CCDC88B-202ENST00000356786 UNC79Q9P2D8 2635 aa12.33□□□□□ -0.43
CCDC88B-202ENST00000356786 ATMQ13315 3056 aa12.32□□□□□ -0.44
CCDC88B-202ENST00000356786 NBEAQ8NFP9 2946 aa12.32□□□□□ -0.44
CCDC88B-202ENST00000356786 STAB1Q9NY15 2570 aa12.32□□□□□ -0.44
CCDC88B-202ENST00000356786 ADGRG4Q8IZF6 3080 aa12.3□□□□□ -0.44
CCDC88B-202ENST00000356786 GCN1Q92616 2671 aaKnown RBP12.3□□□□□ -0.44
CCDC88B-202ENST00000356786 C9orf92A6NGG3 77 aa12.3□□□□□ -0.44
CCDC88B-202ENST00000356786 IGLV7-43P04211 117 aa12.3□□□□□ -0.44
CCDC88B-202ENST00000356786 LINC00304Q8N9R0 145 aa12.29□□□□□ -0.44
CCDC88B-202ENST00000356786 TEP1Q99973 2627 aaKnown RBP12.29□□□□□ -0.44
CCDC88B-202ENST00000356786 LINC01558Q9Y6Z2 57 aa12.28□□□□□ -0.44
CCDC88B-202ENST00000356786 NBEAL1Q6ZS30 2694 aa12.28□□□□□ -0.44
CCDC88B-202ENST00000356786 Q5VV11 94 aa12.27□□□□□ -0.45
CCDC88B-202ENST00000356786 FLNCQ14315 2725 aa12.26□□□□□ -0.45
CCDC88B-202ENST00000356786 A0A0D9SG42 100 aa12.24□□□□□ -0.45
CCDC88B-202ENST00000356786 LINC01554Q52M75 96 aa12.24□□□□□ -0.45
CCDC88B-202ENST00000356786 PRAC1Q96KF2 57 aa12.24□□□□□ -0.45
CCDC88B-202ENST00000356786 HRES1P13985 223 aa12.23□□□□□ -0.45
CCDC88B-202ENST00000356786 MMP24-AS1A0A0U1RRL7 71 aa12.21□□□□□ -0.45
CCDC88B-202ENST00000356786 COL12A1Q99715 3063 aa12.2□□□□□ -0.46
CCDC88B-202ENST00000356786 FLG2Q5D862 2391 aaPredicted RBP12.18□□□□□ -0.46
CCDC88B-202ENST00000356786 TEX15Q9BXT5 2789 aa12.17□□□□□ -0.46
CCDC88B-202ENST00000356786 SPRR1AP35321 89 aa12.17□□□□□ -0.46
CCDC88B-202ENST00000356786 DMXL1Q9Y485 3027 aa12.15□□□□□ -0.46
CCDC88B-202ENST00000356786 WWC2-AS2Q96NR7 200 aa12.14□□□□□ -0.47
CCDC88B-202ENST00000356786 NBEAL2Q6ZNJ1 2754 aa12.13□□□□□ -0.47
CCDC88B-202ENST00000356786 SPINK7P58062 85 aa12.13□□□□□ -0.47
CCDC88B-202ENST00000356786 COL6A5A8TX70 2615 aa12.12□□□□□ -0.47
CCDC88B-202ENST00000356786 KALRNO60229 2985 aa12.11□□□□□ -0.47
CCDC88B-202ENST00000356786 A0A1B0GU33 70 aa12.1□□□□□ -0.47
CCDC88B-202ENST00000356786 H3BS24 57 aa12.08□□□□□ -0.47
CCDC88B-202ENST00000356786 LRBAP50851 2863 aa12.08□□□□□ -0.48
CCDC88B-202ENST00000356786 LINC00472Q9H8W2 130 aa12.08□□□□□ -0.48
CCDC88B-202ENST00000356786 SMR3BP02814 79 aaPredicted RBP12.06□□□□□ -0.48
CCDC88B-202ENST00000356786 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.05□□□□□ -0.48
CCDC88B-202ENST00000356786 MYO15AQ9UKN7 3530 aa12.05□□□□□ -0.48
CCDC88B-202ENST00000356786 ZZEF1O43149 2961 aa12.03□□□□□ -0.48
CCDC88B-202ENST00000356786 SETXQ7Z333 2677 aaKnown RBP12.03□□□□□ -0.48
CCDC88B-202ENST00000356786 LOC400499M0QZD8 3231 aa12.01□□□□□ -0.49
CCDC88B-202ENST00000356786 USP34Q70CQ2 3546 aa12.01□□□□□ -0.49
CCDC88B-202ENST00000356786 CSAG1Q6PB30 78 aa12□□□□□ -0.49
CCDC88B-202ENST00000356786 TACC2O95359 2948 aa12□□□□□ -0.49
CCDC88B-202ENST00000356786 UBR5O95071 2799 aaPredicted RBP12□□□□□ -0.49
CCDC88B-202ENST00000356786 SPRR1BP22528 89 aa11.97□□□□□ -0.49
CCDC88B-202ENST00000356786 DMBT1Q9UGM3 2413 aaPredicted RBP11.96□□□□□ -0.5
CCDC88B-202ENST00000356786 ITPR1Q14643 2758 aa11.96□□□□□ -0.5
CCDC88B-202ENST00000356786 Q5W150 140 aa11.93□□□□□ -0.5
CCDC88B-202ENST00000356786 TNP2Q05952 138 aa11.92□□□□□ -0.5
CCDC88B-202ENST00000356786 LUZP6Q538Z0 58 aa11.91□□□□□ -0.5
CCDC88B-202ENST00000356786 CFAP47Q6ZTR5 3102 aa11.91□□□□□ -0.5
CCDC88B-202ENST00000356786 COX6B2Q6YFQ2 88 aa11.9□□□□□ -0.51
CCDC88B-202ENST00000356786 KRTAP26-1Q6PEX3 210 aa11.88□□□□□ -0.51
CCDC88B-202ENST00000356786 UTP20O75691 2785 aaKnown RBP11.87□□□□□ -0.51
CCDC88B-202ENST00000356786 STAB2Q8WWQ8 2551 aa11.86□□□□□ -0.51
CCDC88B-202ENST00000356786 ITPR2Q14571 2701 aa11.83□□□□□ -0.51
CCDC88B-202ENST00000356786 ZCCHC13Q8WW36 166 aaKnown RBP11.83□□□□□ -0.52
CCDC88B-202ENST00000356786 BAHCC1Q9P281 2608 aa11.83□□□□□ -0.52
CCDC88B-202ENST00000356786 KRTAP29-1A8MX34 341 aaPredicted RBP11.79□□□□□ -0.52
CCDC88B-202ENST00000356786 DMAC1Q96GE9 116 aa11.79□□□□□ -0.52
CCDC88B-202ENST00000356786 PLAC8Q9NZF1 115 aa11.77□□□□□ -0.53
CCDC88B-202ENST00000356786 KRTAP4-16G5E9R7 235 aaPredicted RBP11.76□□□□□ -0.53
CCDC88B-202ENST00000356786 KRTAP1-5Q9BYS1 174 aa11.72□□□□□ -0.53
CCDC88B-202ENST00000356786 ZANQ9Y493 2812 aa11.72□□□□□ -0.53
CCDC88B-202ENST00000356786 Q6ZR54 194 aa11.71□□□□□ -0.53
CCDC88B-202ENST00000356786 APCP25054 2843 aa11.71□□□□□ -0.54
CCDC88B-202ENST00000356786 J3QL48 77 aa11.7□□□□□ -0.54
CCDC88B-202ENST00000356786 NSD1Q96L73 2696 aaPredicted RBP11.7□□□□□ -0.54
CCDC88B-202ENST00000356786 ASH1LQ9NR48 2969 aaKnown RBP11.7□□□□□ -0.54
CCDC88B-202ENST00000356786 HRNRQ86YZ3 2850 aaPredicted RBP11.65□□□□□ -0.54
CCDC88B-202ENST00000356786 CAMK2N1Q7Z7J9 78 aa11.64□□□□□ -0.55
CCDC88B-202ENST00000356786 HIVEP1P15822 2718 aa11.62□□□□□ -0.55
CCDC88B-202ENST00000356786 Q6ZSA8 131 aa11.6□□□□□ -0.55
CCDC88B-202ENST00000356786 ASB16-AS1Q495Z4 193 aa11.59□□□□□ -0.55
CCDC88B-202ENST00000356786 RPL37P61927 97 aaKnown RBP11.58□□□□□ -0.56
CCDC88B-202ENST00000356786 MUC3AQ02505 3323 aa11.58□□□□□ -0.56
CCDC88B-202ENST00000356786 A6NN06 94 aa11.57□□□□□ -0.56
CCDC88B-202ENST00000356786 LCE6AA0A183 80 aa11.55□□□□□ -0.56
CCDC88B-202ENST00000356786 ROMO1P60602 79 aa11.54□□□□□ -0.56
CCDC88B-202ENST00000356786 A8MU10 97 aa11.53□□□□□ -0.56
CCDC88B-202ENST00000356786 LINC00483Q53H64 154 aa11.53□□□□□ -0.56
CCDC88B-202ENST00000356786 SPATA8Q6RVD6 105 aa11.53□□□□□ -0.56
CCDC88B-202ENST00000356786 S4R3F8 94 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 113.7 ms