RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 DNAL4O96015 105 aa13.03□□□□□ -0.32
SDC3-202ENST00000339394 OCIAD2Q56VL3 154 aa13.03□□□□□ -0.32
SDC3-202ENST00000339394 SMIM29Q86T20 159 aa13.03□□□□□ -0.32
SDC3-202ENST00000339394 TCL1BO95988 128 aa13.03□□□□□ -0.32
SDC3-202ENST00000339394 LAMTOR3Q9UHA4 124 aa13.03□□□□□ -0.32
SDC3-202ENST00000339394 TRACP01848 142 aa13.02□□□□□ -0.33
SDC3-202ENST00000339394 LYRM7Q5U5X0 104 aa13.02□□□□□ -0.33
SDC3-202ENST00000339394 A0A1W2PPM0 123 aa13.01□□□□□ -0.33
SDC3-202ENST00000339394 PPDPFLQ8WWR9 84 aa13□□□□□ -0.33
SDC3-202ENST00000339394 MOBPQ13875 183 aa12.99□□□□□ -0.33
SDC3-202ENST00000339394 ATXN8Q156A1 80 aa12.99□□□□□ -0.33
SDC3-202ENST00000339394 DMBT1Q9UGM3 2413 aaPredicted RBP12.97□□□□□ -0.33
SDC3-202ENST00000339394 TRBV20-1A0A075B6N2 111 aa12.97□□□□□ -0.33
SDC3-202ENST00000339394 GHRHP01286 108 aa12.97□□□□□ -0.33
SDC3-202ENST00000339394 FABP2P12104 132 aa12.97□□□□□ -0.33
SDC3-202ENST00000339394 C9orf153Q5TBE3 101 aa12.97□□□□□ -0.33
SDC3-202ENST00000339394 ORMDL1Q9P0S3 153 aa12.97□□□□□ -0.33
SDC3-202ENST00000339394 SSBP3-AS1Q7Z2R9 100 aa12.94□□□□□ -0.34
SDC3-202ENST00000339394 Q8NBF4 154 aa12.93□□□□□ -0.34
SDC3-202ENST00000339394 H3BQ85 93 aa12.9□□□□□ -0.34
SDC3-202ENST00000339394 TMEM256-PLSCR3K7ERE1 68 aa12.9□□□□□ -0.34
SDC3-202ENST00000339394 HERC1Q15751 4861 aa12.9□□□□□ -0.34
SDC3-202ENST00000339394 F8WEM9 126 aa12.9□□□□□ -0.35
SDC3-202ENST00000339394 LINC00304Q8N9R0 145 aa12.9□□□□□ -0.35
SDC3-202ENST00000339394 NDUFV3P56181 108 aaKnown RBP12.89□□□□□ -0.35
SDC3-202ENST00000339394 SPCS1Q9Y6A9 102 aa12.88□□□□□ -0.35
SDC3-202ENST00000339394 BAALC-AS2P0C853 105 aa12.87□□□□□ -0.35
SDC3-202ENST00000339394 H3BMG7 143 aa12.86□□□□□ -0.35
SDC3-202ENST00000339394 IGLV8-61A0A075B6I0 122 aa12.85□□□□□ -0.35
SDC3-202ENST00000339394 C9JAW5 83 aa12.83□□□□□ -0.36
SDC3-202ENST00000339394 UBE2V1Q13404 147 aa12.83□□□□□ -0.36
SDC3-202ENST00000339394 C4orf48Q5BLP8 95 aa12.83□□□□□ -0.36
SDC3-202ENST00000339394 A0A0G2JQZ4 141 aa12.82□□□□□ -0.36
SDC3-202ENST00000339394 SPAG11AQ6PDA7 123 aa12.82□□□□□ -0.36
SDC3-202ENST00000339394 Q6JHZ5 121 aa12.8□□□□□ -0.36
SDC3-202ENST00000339394 ANKRD29Q8N6D5 301 aa12.79□□□□□ -0.36
SDC3-202ENST00000339394 K7EP34 96 aa12.78□□□□□ -0.36
SDC3-202ENST00000339394 IGFL1Q6UW32 110 aa12.78□□□□□ -0.36
SDC3-202ENST00000339394 A0A1B0GV72 72 aa12.77□□□□□ -0.36
SDC3-202ENST00000339394 SPINK1P00995 79 aa12.77□□□□□ -0.36
SDC3-202ENST00000339394 HRCT1Q6UXD1 115 aa12.77□□□□□ -0.37
SDC3-202ENST00000339394 MTURNQ8N3F0 131 aa12.77□□□□□ -0.37
SDC3-202ENST00000339394 CD164Q04900 197 aa12.73□□□□□ -0.37
SDC3-202ENST00000339394 H3BT86 120 aa12.73□□□□□ -0.37
SDC3-202ENST00000339394 GTF2H5Q6ZYL4 71 aa12.72□□□□□ -0.37
SDC3-202ENST00000339394 RPS29P62273 56 aaKnown RBP12.7□□□□□ -0.38
SDC3-202ENST00000339394 RBM3P98179 157 aaKnown RBP12.7□□□□□ -0.38
SDC3-202ENST00000339394 JMJD7-PLA2G4BH0Y9G9 81 aa12.66□□□□□ -0.38
SDC3-202ENST00000339394 PRO0461Q9UI25 63 aa12.66□□□□□ -0.38
SDC3-202ENST00000339394 SMCPP49901 116 aaPredicted RBP12.65□□□□□ -0.38
SDC3-202ENST00000339394 TRBV7-4A0A0J9YYF1 115 aa12.64□□□□□ -0.39
SDC3-202ENST00000339394 DSCR8Q96T75 97 aa12.64□□□□□ -0.39
SDC3-202ENST00000339394 Q6Q795 121 aa12.64□□□□□ -0.39
SDC3-202ENST00000339394 TEN1Q86WV5 123 aa12.64□□□□□ -0.39
SDC3-202ENST00000339394 A0A1W2PNM2 257 aa12.63□□□□□ -0.39
SDC3-202ENST00000339394 OBSCN-AS1Q96MR7 158 aa12.63□□□□□ -0.39
SDC3-202ENST00000339394 TRBV7-7A0A0K0K1E9 115 aa12.62□□□□□ -0.39
SDC3-202ENST00000339394 RETNLBQ9BQ08 111 aa12.62□□□□□ -0.39
SDC3-202ENST00000339394 LIMD2Q9BT23 127 aa12.62□□□□□ -0.39
SDC3-202ENST00000339394 Q5XG85 94 aa12.6□□□□□ -0.39
SDC3-202ENST00000339394 CCKP06307 115 aa12.59□□□□□ -0.39
SDC3-202ENST00000339394 HMCN2Q8NDA2 5059 aa12.59□□□□□ -0.39
SDC3-202ENST00000339394 A0A1B0GV90 55 aa12.58□□□□□ -0.4
SDC3-202ENST00000339394 C14orf132Q9NPU4 83 aa12.58□□□□□ -0.4
SDC3-202ENST00000339394 F8W1H4 67 aa12.57□□□□□ -0.4
SDC3-202ENST00000339394 LOC110117498A0A087WWA1 95 aa12.55□□□□□ -0.4
SDC3-202ENST00000339394 VPS25Q9BRG1 176 aa12.55□□□□□ -0.4
SDC3-202ENST00000339394 A0A087WSZ3 146 aa12.54□□□□□ -0.4
SDC3-202ENST00000339394 Q6ZQT0 140 aa12.54□□□□□ -0.4
SDC3-202ENST00000339394 PDE6GP18545 87 aa12.53□□□□□ -0.4
SDC3-202ENST00000339394 PRR4Q16378 134 aa12.53□□□□□ -0.4
SDC3-202ENST00000339394 ASB16-AS1Q495Z4 193 aa12.48□□□□□ -0.41
SDC3-202ENST00000339394 SS18L2Q9UHA2 77 aa12.48□□□□□ -0.41
SDC3-202ENST00000339394 C1orf195Q5TG92 126 aa12.47□□□□□ -0.41
SDC3-202ENST00000339394 FP248Q71RG6 208 aaPredicted RBP12.46□□□□□ -0.42
SDC3-202ENST00000339394 ETDBQ3ZM63 59 aa12.45□□□□□ -0.42
SDC3-202ENST00000339394 LPAP08519 4548 aa12.44□□□□□ -0.42
SDC3-202ENST00000339394 IGLV7-46A0A075B6I9 117 aa12.43□□□□□ -0.42
SDC3-202ENST00000339394 C21orf62-AS1Q17RA5 79 aa12.42□□□□□ -0.42
SDC3-202ENST00000339394 A0A1B0GW54 56 aa12.4□□□□□ -0.42
SDC3-202ENST00000339394 LRP2P98164 4655 aa12.36□□□□□ -0.43
SDC3-202ENST00000339394 Q96NJ1 140 aa12.36□□□□□ -0.43
SDC3-202ENST00000339394 LINC00472Q9H8W2 130 aa12.33□□□□□ -0.44
SDC3-202ENST00000339394 TPRXLQ17RH7 258 aa12.31□□□□□ -0.44
SDC3-202ENST00000339394 DEFB116Q30KQ4 102 aa12.3□□□□□ -0.44
SDC3-202ENST00000339394 KRTAP13-3Q3SY46 172 aa12.29□□□□□ -0.44
SDC3-202ENST00000339394 IGKV4-1P06312 121 aa12.26□□□□□ -0.45
SDC3-202ENST00000339394 NREPQ16612 68 aa12.26□□□□□ -0.45
SDC3-202ENST00000339394 SIGMAR1Q99720 223 aa12.22□□□□□ -0.45
SDC3-202ENST00000339394 CDIP1Q9H305 208 aa12.22□□□□□ -0.45
SDC3-202ENST00000339394 C9orf92A6NGG3 77 aa12.21□□□□□ -0.46
SDC3-202ENST00000339394 LINC00846Q9NV44 126 aa12.2□□□□□ -0.46
SDC3-202ENST00000339394 J3KT08 172 aa12.18□□□□□ -0.46
SDC3-202ENST00000339394 Q6ZVQ6 151 aa12.17□□□□□ -0.46
SDC3-202ENST00000339394 UBR4Q5T4S7 5183 aa12.14□□□□□ -0.47
SDC3-202ENST00000339394 UBL5Q9BZL1 73 aa12.13□□□□□ -0.47
SDC3-202ENST00000339394 XP32Q5T750 250 aa12.11□□□□□ -0.47
SDC3-202ENST00000339394 IGHV6-1A0A0B4J1U7 121 aa12.09□□□□□ -0.47
SDC3-202ENST00000339394 A8MWP4 228 aa12.09□□□□□ -0.47
SDC3-202ENST00000339394 BPY2O14599 106 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 107.3 ms