RNA–Protein interactions for RNA: ENST00000330687.8

CMTM4-201, Transcript of CKLF like MARVEL transmembrane domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene CMTM4, Length 3,414 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM4-201ENST00000330687 SPRR4Q96PI1 79 aa13.16□□□□□ -0.3
CMTM4-201ENST00000330687 TNP2Q05952 138 aa13.14□□□□□ -0.31
CMTM4-201ENST00000330687 COA5Q86WW8 74 aa13.14□□□□□ -0.31
CMTM4-201ENST00000330687 IGLV1-50A0A075B6I6 118 aa13.13□□□□□ -0.31
CMTM4-201ENST00000330687 KRTAP26-1Q6PEX3 210 aa13.13□□□□□ -0.31
CMTM4-201ENST00000330687 TENM3Q9P273 2699 aa13.13□□□□□ -0.31
CMTM4-201ENST00000330687 MAST4O15021 2626 aa13.13□□□□□ -0.31
CMTM4-201ENST00000330687 CASC10Q5T4H9 136 aa13.13□□□□□ -0.31
CMTM4-201ENST00000330687 NOTCH1P46531 2555 aa13.13□□□□□ -0.31
CMTM4-201ENST00000330687 KRTAP1-3Q8IUG1 177 aa13.12□□□□□ -0.31
CMTM4-201ENST00000330687 OTOGQ6ZRI0 2925 aa13.11□□□□□ -0.31
CMTM4-201ENST00000330687 TRRAPQ9Y4A5 3859 aa13.1□□□□□ -0.31
CMTM4-201ENST00000330687 COL6A5A8TX70 2615 aa13.1□□□□□ -0.31
CMTM4-201ENST00000330687 NDUFS5O43920 106 aa13.09□□□□□ -0.31
CMTM4-201ENST00000330687 A0A1B0GW54 56 aa13.07□□□□□ -0.32
CMTM4-201ENST00000330687 REG3GQ6UW15 175 aa13.07□□□□□ -0.32
CMTM4-201ENST00000330687 FBN1P35555 2871 aaKnown RBP13.07□□□□□ -0.32
CMTM4-201ENST00000330687 ATP11AUNQ6ZP68 121 aa13.06□□□□□ -0.32
CMTM4-201ENST00000330687 STAB1Q9NY15 2570 aa13.04□□□□□ -0.32
CMTM4-201ENST00000330687 KRTAP4-16G5E9R7 235 aaPredicted RBP13.02□□□□□ -0.32
CMTM4-201ENST00000330687 LOC101927531A0A1B0GV80 90 aa12.99□□□□□ -0.33
CMTM4-201ENST00000330687 DEFB131BA0A096LNP1 70 aa12.99□□□□□ -0.33
CMTM4-201ENST00000330687 KRTAP7-1Q8IUC3 87 aa12.99□□□□□ -0.33
CMTM4-201ENST00000330687 CNBPP62633 177 aaKnown RBP12.98□□□□□ -0.33
CMTM4-201ENST00000330687 MGAM2Q2M2H8 2515 aa12.97□□□□□ -0.33
CMTM4-201ENST00000330687 NSD1Q96L73 2696 aaPredicted RBP12.96□□□□□ -0.33
CMTM4-201ENST00000330687 SPINK7P58062 85 aa12.95□□□□□ -0.34
CMTM4-201ENST00000330687 SPANXA2-OT1Q8N9U9 137 aa12.95□□□□□ -0.34
CMTM4-201ENST00000330687 C11orf45Q8TAV5 145 aa12.95□□□□□ -0.34
CMTM4-201ENST00000330687 Q75L30 129 aa12.95□□□□□ -0.34
CMTM4-201ENST00000330687 OXLD1Q5BKU9 147 aa12.94□□□□□ -0.34
CMTM4-201ENST00000330687 CSMD3Q7Z407 3707 aa12.94□□□□□ -0.34
CMTM4-201ENST00000330687 SPRR1AP35321 89 aa12.94□□□□□ -0.34
CMTM4-201ENST00000330687 PRAC1Q96KF2 57 aa12.94□□□□□ -0.34
CMTM4-201ENST00000330687 MOBPQ13875 183 aa12.93□□□□□ -0.34
CMTM4-201ENST00000330687 KRTAP29-1A8MX34 341 aaPredicted RBP12.93□□□□□ -0.34
CMTM4-201ENST00000330687 COL7A1Q02388 2944 aa12.92□□□□□ -0.34
CMTM4-201ENST00000330687 A6NN06 94 aa12.92□□□□□ -0.34
CMTM4-201ENST00000330687 LINC01556Q5JQF7 62 aa12.92□□□□□ -0.34
CMTM4-201ENST00000330687 CDC42SE1Q9NRR8 79 aa12.92□□□□□ -0.34
CMTM4-201ENST00000330687 KRTAP1-1Q07627 177 aa12.91□□□□□ -0.34
CMTM4-201ENST00000330687 C7orf65Q6ZTY9 151 aa12.9□□□□□ -0.34
CMTM4-201ENST00000330687 A8MWP4 228 aa12.88□□□□□ -0.35
CMTM4-201ENST00000330687 C9orf163Q8N9P6 203 aa12.87□□□□□ -0.35
CMTM4-201ENST00000330687 IGLV9-49A0A0B4J1Y8 123 aa12.84□□□□□ -0.35
CMTM4-201ENST00000330687 H3BPC8 53 aa12.84□□□□□ -0.35
CMTM4-201ENST00000330687 IGHV6-1A0A0B4J1U7 121 aa12.83□□□□□ -0.36
CMTM4-201ENST00000330687 CHTF8P0CG12 524 aa12.83□□□□□ -0.36
CMTM4-201ENST00000330687 PRR26Q8N8Z3 221 aa12.83□□□□□ -0.36
CMTM4-201ENST00000330687 IGLV7-46A0A075B6I9 117 aa12.82□□□□□ -0.36
CMTM4-201ENST00000330687 PHF5AQ7RTV0 110 aaKnown RBP12.8□□□□□ -0.36
CMTM4-201ENST00000330687 TLX1NBP0CAT3 122 aa12.8□□□□□ -0.36
CMTM4-201ENST00000330687 PLA2G2DQ9UNK4 145 aa12.79□□□□□ -0.36
CMTM4-201ENST00000330687 ADM2Q7Z4H4 148 aa12.78□□□□□ -0.36
CMTM4-201ENST00000330687 INAFM1C9JVW0 142 aa12.78□□□□□ -0.36
CMTM4-201ENST00000330687 MMP24-AS1A0A0U1RRL7 71 aa12.76□□□□□ -0.37
CMTM4-201ENST00000330687 LINC00472Q9H8W2 130 aa12.75□□□□□ -0.37
CMTM4-201ENST00000330687 IGLV5-37A0A075B6J1 123 aa12.74□□□□□ -0.37
CMTM4-201ENST00000330687 LINC00313P59037 77 aa12.74□□□□□ -0.37
CMTM4-201ENST00000330687 HRES1P13985 223 aa12.74□□□□□ -0.37
CMTM4-201ENST00000330687 J3QKU1 62 aa12.73□□□□□ -0.37
CMTM4-201ENST00000330687 LINC01558Q9Y6Z2 57 aa12.73□□□□□ -0.37
CMTM4-201ENST00000330687 CDK2AP2O75956 126 aa12.72□□□□□ -0.37
CMTM4-201ENST00000330687 H3BNG1 76 aa12.71□□□□□ -0.37
CMTM4-201ENST00000330687 C8orf87E5RJ46 101 aa12.71□□□□□ -0.38
CMTM4-201ENST00000330687 DNAH10OSP0CZ25 163 aa12.71□□□□□ -0.38
CMTM4-201ENST00000330687 C4orf48Q5BLP8 95 aa12.7□□□□□ -0.38
CMTM4-201ENST00000330687 SPINK6Q6UWN8 80 aa12.7□□□□□ -0.38
CMTM4-201ENST00000330687 ANK3Q12955 4377 aaKnown RBP12.7□□□□□ -0.38
CMTM4-201ENST00000330687 KRTAP11-1Q8IUC1 163 aa12.69□□□□□ -0.38
CMTM4-201ENST00000330687 K7EIL1 84 aa12.68□□□□□ -0.38
CMTM4-201ENST00000330687 MDFIQ99750 246 aa12.65□□□□□ -0.39
CMTM4-201ENST00000330687 RETNLBQ9BQ08 111 aa12.63□□□□□ -0.39
CMTM4-201ENST00000330687 TENM2Q9NT68 2774 aa12.63□□□□□ -0.39
CMTM4-201ENST00000330687 KRTAP10-11P60412 298 aa12.61□□□□□ -0.39
CMTM4-201ENST00000330687 C8orf17Q9NRJ1 99 aa12.61□□□□□ -0.39
CMTM4-201ENST00000330687 IGLV8-61A0A075B6I0 122 aa12.61□□□□□ -0.39
CMTM4-201ENST00000330687 ANAPC11Q9NYG5 84 aa12.58□□□□□ -0.4
CMTM4-201ENST00000330687 TP53AIP1Q9HCN2 124 aa12.57□□□□□ -0.4
CMTM4-201ENST00000330687 A0A087X002 238 aa12.56□□□□□ -0.4
CMTM4-201ENST00000330687 NOTCH2NLQ7Z3S9 236 aa12.56□□□□□ -0.4
CMTM4-201ENST00000330687 STAB2Q8WWQ8 2551 aa12.55□□□□□ -0.4
CMTM4-201ENST00000330687 H3BS24 57 aa12.54□□□□□ -0.4
CMTM4-201ENST00000330687 MRPL34Q9BQ48 92 aaKnown RBP12.49□□□□□ -0.41
CMTM4-201ENST00000330687 UBE2DNLQ8IWF7 75 aa12.49□□□□□ -0.41
CMTM4-201ENST00000330687 A0A1B0GU69 56 aa12.47□□□□□ -0.41
CMTM4-201ENST00000330687 LINC01554Q52M75 96 aa12.47□□□□□ -0.41
CMTM4-201ENST00000330687 PLAC8Q9NZF1 115 aa12.46□□□□□ -0.41
CMTM4-201ENST00000330687 A0A1B0GVX0 72 aa12.46□□□□□ -0.42
CMTM4-201ENST00000330687 KRTAP1-5Q9BYS1 174 aa12.44□□□□□ -0.42
CMTM4-201ENST00000330687 KMT2BQ9UMN6 2715 aaPredicted RBP12.44□□□□□ -0.42
CMTM4-201ENST00000330687 Q5W150 140 aa12.42□□□□□ -0.42
CMTM4-201ENST00000330687 Q6ZR54 194 aa12.41□□□□□ -0.42
CMTM4-201ENST00000330687 Q96NJ1 140 aa12.4□□□□□ -0.42
CMTM4-201ENST00000330687 ACYP2P14621 99 aa12.4□□□□□ -0.42
CMTM4-201ENST00000330687 PANO1I0J062 215 aa12.37□□□□□ -0.43
CMTM4-201ENST00000330687 SPRR1BP22528 89 aa12.36□□□□□ -0.43
CMTM4-201ENST00000330687 DNAH10Q8IVF4 4471 aa12.34□□□□□ -0.43
CMTM4-201ENST00000330687 CSAG1Q6PB30 78 aa12.34□□□□□ -0.43
CMTM4-201ENST00000330687 MIR22HGQ0VDD5 57 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms