RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 NUPR2A6NF83 97 aa6.71□□□□□ -1.34
COL3A1-202ENST00000317840 DSCR10P59022 87 aa6.71□□□□□ -1.34
COL3A1-202ENST00000317840 RPL37AP61513 92 aaKnown RBP6.71□□□□□ -1.34
COL3A1-202ENST00000317840 B9D2Q9BPU9 175 aa6.71□□□□□ -1.34
COL3A1-202ENST00000317840 FAM229BQ4G0N7 80 aa6.71□□□□□ -1.34
COL3A1-202ENST00000317840 IGFL1Q6UW32 110 aa6.7□□□□□ -1.34
COL3A1-202ENST00000317840 SPRR1AP35321 89 aa6.69□□□□□ -1.34
COL3A1-202ENST00000317840 C14orf177Q52M58 125 aa6.69□□□□□ -1.34
COL3A1-202ENST00000317840 KRTAP4-16G5E9R7 235 aaPredicted RBP6.68□□□□□ -1.34
COL3A1-202ENST00000317840 PHF5AQ7RTV0 110 aaKnown RBP6.68□□□□□ -1.34
COL3A1-202ENST00000317840 SPRR4Q96PI1 79 aa6.68□□□□□ -1.34
COL3A1-202ENST00000317840 IGLV5-37A0A075B6J1 123 aa6.67□□□□□ -1.34
COL3A1-202ENST00000317840 PSPHP1O15172 72 aa6.67□□□□□ -1.34
COL3A1-202ENST00000317840 TNP2Q05952 138 aa6.67□□□□□ -1.34
COL3A1-202ENST00000317840 KRTAP7-1Q8IUC3 87 aa6.67□□□□□ -1.34
COL3A1-202ENST00000317840 C16orf90A8MZG2 172 aa6.66□□□□□ -1.34
COL3A1-202ENST00000317840 CASC2Q6XLA1 102 aa6.66□□□□□ -1.34
COL3A1-202ENST00000317840 C1orf64Q8NEQ6 169 aa6.66□□□□□ -1.34
COL3A1-202ENST00000317840 NDUFB1O75438 58 aa6.65□□□□□ -1.34
COL3A1-202ENST00000317840 NBDYA0A0U1RRE5 68 aa6.64□□□□□ -1.35
COL3A1-202ENST00000317840 IGLV9-49A0A0B4J1Y8 123 aa6.63□□□□□ -1.35
COL3A1-202ENST00000317840 NDUFS5O43920 106 aa6.63□□□□□ -1.35
COL3A1-202ENST00000317840 H0Y9P7 68 aa6.63□□□□□ -1.35
COL3A1-202ENST00000317840 APLNQ9ULZ1 77 aa6.62□□□□□ -1.35
COL3A1-202ENST00000317840 KRTAP1-5Q9BYS1 174 aa6.62□□□□□ -1.35
COL3A1-202ENST00000317840 TGP01266 2768 aa6.61□□□□□ -1.35
COL3A1-202ENST00000317840 hDV103S1A0JD37 113 aa6.61□□□□□ -1.35
COL3A1-202ENST00000317840 CDK2AP2O75956 126 aa6.61□□□□□ -1.35
COL3A1-202ENST00000317840 C1orf134Q5TEV5 83 aa6.59□□□□□ -1.35
COL3A1-202ENST00000317840 SRRM2Q9UQ35 2752 aaKnown RBP6.59□□□□□ -1.35
COL3A1-202ENST00000317840 C1orf195Q5TG92 126 aa6.59□□□□□ -1.35
COL3A1-202ENST00000317840 IGLV5-52A0A0A0MRZ9 124 aa6.58□□□□□ -1.36
COL3A1-202ENST00000317840 PCOTHQ58A44 107 aa6.57□□□□□ -1.36
COL3A1-202ENST00000317840 PRR15Q8IV56 129 aa6.56□□□□□ -1.36
COL3A1-202ENST00000317840 TRAV22A0A0B4J277 110 aa6.55□□□□□ -1.36
COL3A1-202ENST00000317840 A8MWP4 228 aa6.55□□□□□ -1.36
COL3A1-202ENST00000317840 CNBPP62633 177 aaKnown RBP6.55□□□□□ -1.36
COL3A1-202ENST00000317840 A8MUN3 132 aa6.54□□□□□ -1.36
COL3A1-202ENST00000317840 IGHV6-1A0A0B4J1U7 121 aa6.53□□□□□ -1.36
COL3A1-202ENST00000317840 CHKB-CPT1BH3BT56 60 aa6.53□□□□□ -1.36
COL3A1-202ENST00000317840 KRTAP11-1Q8IUC1 163 aa6.53□□□□□ -1.36
COL3A1-202ENST00000317840 ZCCHC13Q8WW36 166 aaKnown RBP6.52□□□□□ -1.36
COL3A1-202ENST00000317840 SPINK6Q6UWN8 80 aa6.52□□□□□ -1.37
COL3A1-202ENST00000317840 V9GYY9 64 aa6.52□□□□□ -1.37
COL3A1-202ENST00000317840 RTL8CO15255 209 aa6.52□□□□□ -1.37
COL3A1-202ENST00000317840 C9orf163Q8N9P6 203 aa6.51□□□□□ -1.37
COL3A1-202ENST00000317840 PRR15LQ9BU68 103 aa6.51□□□□□ -1.37
COL3A1-202ENST00000317840 LCE6AA0A183 80 aa6.5□□□□□ -1.37
COL3A1-202ENST00000317840 SPTSSBQ8NFR3 76 aa6.5□□□□□ -1.37
COL3A1-202ENST00000317840 IGLV8-61A0A075B6I0 122 aa6.5□□□□□ -1.37
COL3A1-202ENST00000317840 CSMD3Q7Z407 3707 aa6.49□□□□□ -1.37
COL3A1-202ENST00000317840 CYP4F30PQ9H0H9 118 aa6.49□□□□□ -1.37
COL3A1-202ENST00000317840 A0A087WTM6 91 aa6.48□□□□□ -1.37
COL3A1-202ENST00000317840 MOBPQ13875 183 aa6.48□□□□□ -1.37
COL3A1-202ENST00000317840 Q1T7F1 81 aa6.48□□□□□ -1.37
COL3A1-202ENST00000317840 ANAPC11Q9NYG5 84 aa6.48□□□□□ -1.37
COL3A1-202ENST00000317840 LINC00472Q9H8W2 130 aa6.48□□□□□ -1.37
COL3A1-202ENST00000317840 H3BPC8 53 aa6.47□□□□□ -1.37
COL3A1-202ENST00000317840 A6NED7 52 aa6.46□□□□□ -1.37
COL3A1-202ENST00000317840 PANO1I0J062 215 aa6.46□□□□□ -1.37
COL3A1-202ENST00000317840 WWC2-AS2Q96NR7 200 aa6.46□□□□□ -1.37
COL3A1-202ENST00000317840 KRTAP29-1A8MX34 341 aaPredicted RBP6.46□□□□□ -1.38
COL3A1-202ENST00000317840 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.45□□□□□ -1.38
COL3A1-202ENST00000317840 PMAIP1Q13794 54 aa6.45□□□□□ -1.38
COL3A1-202ENST00000317840 CIRBP-AS1Q8TBR5 109 aa6.44□□□□□ -1.38
COL3A1-202ENST00000317840 COL7A1Q02388 2944 aa6.44□□□□□ -1.38
COL3A1-202ENST00000317840 SPRR1BP22528 89 aa6.44□□□□□ -1.38
COL3A1-202ENST00000317840 ZNF706Q9Y5V0 76 aaPredicted RBP6.44□□□□□ -1.38
COL3A1-202ENST00000317840 LIMD2Q9BT23 127 aa6.43□□□□□ -1.38
COL3A1-202ENST00000317840 COA5Q86WW8 74 aa6.43□□□□□ -1.38
COL3A1-202ENST00000317840 MMP24-AS1A0A0U1RRL7 71 aa6.43□□□□□ -1.38
COL3A1-202ENST00000317840 SPANXA2-OT1Q8N9U9 137 aa6.42□□□□□ -1.38
COL3A1-202ENST00000317840 SPAG11AQ6PDA7 123 aa6.42□□□□□ -1.38
COL3A1-202ENST00000317840 C8orf17Q9NRJ1 99 aa6.42□□□□□ -1.38
COL3A1-202ENST00000317840 TP53AIP1Q9HCN2 124 aa6.41□□□□□ -1.38
COL3A1-202ENST00000317840 ANK2Q01484 3957 aa6.4□□□□□ -1.38
COL3A1-202ENST00000317840 PSORS1C2Q9UIG4 136 aa6.39□□□□□ -1.39
COL3A1-202ENST00000317840 Q8N9P0 234 aaPredicted RBP6.38□□□□□ -1.39
COL3A1-202ENST00000317840 A0A1B0GVX0 72 aa6.38□□□□□ -1.39
COL3A1-202ENST00000317840 MRPL34Q9BQ48 92 aaKnown RBP6.37□□□□□ -1.39
COL3A1-202ENST00000317840 C4orf48Q5BLP8 95 aa6.36□□□□□ -1.39
COL3A1-202ENST00000317840 Q5VV11 94 aa6.36□□□□□ -1.39
COL3A1-202ENST00000317840 RETNLBQ9BQ08 111 aa6.36□□□□□ -1.39
COL3A1-202ENST00000317840 SPACA4Q8TDM5 124 aa6.35□□□□□ -1.39
COL3A1-202ENST00000317840 SMR3BP02814 79 aaPredicted RBP6.35□□□□□ -1.39
COL3A1-202ENST00000317840 IGLV7-46A0A075B6I9 117 aa6.35□□□□□ -1.39
COL3A1-202ENST00000317840 A8MU10 97 aa6.35□□□□□ -1.39
COL3A1-202ENST00000317840 CD164Q04900 197 aa6.34□□□□□ -1.39
COL3A1-202ENST00000317840 ZNF861PO60384 105 aa6.34□□□□□ -1.39
COL3A1-202ENST00000317840 SEC61GP60059 68 aa6.32□□□□□ -1.4
COL3A1-202ENST00000317840 KRTAP13-1Q8IUC0 172 aa6.31□□□□□ -1.4
COL3A1-202ENST00000317840 A0A087X002 238 aa6.3□□□□□ -1.4
COL3A1-202ENST00000317840 NOTCH2NLQ7Z3S9 236 aa6.3□□□□□ -1.4
COL3A1-202ENST00000317840 KRTAP10-2P60368 255 aa6.3□□□□□ -1.4
COL3A1-202ENST00000317840 LOC101927531A0A1B0GV80 90 aa6.29□□□□□ -1.4
COL3A1-202ENST00000317840 Q6ZRN7 208 aaPredicted RBP6.29□□□□□ -1.4
COL3A1-202ENST00000317840 Q96NJ1 140 aa6.29□□□□□ -1.4
COL3A1-202ENST00000317840 DNAH10Q8IVF4 4471 aa6.29□□□□□ -1.4
COL3A1-202ENST00000317840 PRR26Q8N8Z3 221 aa6.28□□□□□ -1.4
COL3A1-202ENST00000317840 HUWE1Q7Z6Z7 4374 aaKnown RBP6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms