RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 WFDC13Q8IUB5 93 aa11.93□□□□□ -0.5
RTN4-201ENST00000317610 IGKV2-24A0A0C4DH68 120 aa11.93□□□□□ -0.5
RTN4-201ENST00000317610 SPRR1BP22528 89 aa11.92□□□□□ -0.5
RTN4-201ENST00000317610 UBE2AP49459 152 aa11.92□□□□□ -0.5
RTN4-201ENST00000317610 MP68P56378 58 aa11.91□□□□□ -0.5
RTN4-201ENST00000317610 KRTAP1-5Q9BYS1 174 aa11.9□□□□□ -0.5
RTN4-201ENST00000317610 TRAV22A0A0B4J277 110 aa11.89□□□□□ -0.51
RTN4-201ENST00000317610 H0Y9J4 135 aa11.89□□□□□ -0.51
RTN4-201ENST00000317610 RPL37AP61513 92 aaKnown RBP11.88□□□□□ -0.51
RTN4-201ENST00000317610 LRCOL1A6NCL2 159 aa11.88□□□□□ -0.51
RTN4-201ENST00000317610 MAST4O15021 2626 aa11.87□□□□□ -0.51
RTN4-201ENST00000317610 F8P00451 2351 aa11.87□□□□□ -0.51
RTN4-201ENST00000317610 DNAH10Q8IVF4 4471 aa11.87□□□□□ -0.51
RTN4-201ENST00000317610 KRTAP11-1Q8IUC1 163 aa11.86□□□□□ -0.51
RTN4-201ENST00000317610 PRR15Q8IV56 129 aa11.86□□□□□ -0.51
RTN4-201ENST00000317610 PKIGQ9Y2B9 76 aa11.86□□□□□ -0.51
RTN4-201ENST00000317610 PRB2P02812 416 aaPredicted RBP11.85□□□□□ -0.51
RTN4-201ENST00000317610 STAB1Q9NY15 2570 aa11.85□□□□□ -0.51
RTN4-201ENST00000317610 H3BPC8 53 aa11.85□□□□□ -0.51
RTN4-201ENST00000317610 LINC00472Q9H8W2 130 aa11.85□□□□□ -0.51
RTN4-201ENST00000317610 A8MWP4 228 aa11.83□□□□□ -0.51
RTN4-201ENST00000317610 PRR4Q16378 134 aa11.83□□□□□ -0.51
RTN4-201ENST00000317610 CASC2Q6XLA1 102 aa11.83□□□□□ -0.51
RTN4-201ENST00000317610 PHF5AQ7RTV0 110 aaKnown RBP11.83□□□□□ -0.52
RTN4-201ENST00000317610 LINC00208Q96KT6 92 aa11.83□□□□□ -0.52
RTN4-201ENST00000317610 K7EIL1 84 aa11.82□□□□□ -0.52
RTN4-201ENST00000317610 FBN1P35555 2871 aaKnown RBP11.82□□□□□ -0.52
RTN4-201ENST00000317610 SPANXA2-OT1Q8N9U9 137 aa11.81□□□□□ -0.52
RTN4-201ENST00000317610 H0Y9P7 68 aa11.8□□□□□ -0.52
RTN4-201ENST00000317610 C14orf177Q52M58 125 aa11.8□□□□□ -0.52
RTN4-201ENST00000317610 DNAH9Q9NYC9 4486 aa11.8□□□□□ -0.52
RTN4-201ENST00000317610 CHTF8P0CG12 524 aa11.8□□□□□ -0.52
RTN4-201ENST00000317610 B9D2Q9BPU9 175 aa11.79□□□□□ -0.52
RTN4-201ENST00000317610 NOTCH1P46531 2555 aa11.79□□□□□ -0.52
RTN4-201ENST00000317610 C1orf195Q5TG92 126 aa11.75□□□□□ -0.53
RTN4-201ENST00000317610 V9GYY9 64 aa11.75□□□□□ -0.53
RTN4-201ENST00000317610 C9orf163Q8N9P6 203 aa11.73□□□□□ -0.53
RTN4-201ENST00000317610 PSPHP1O15172 72 aa11.72□□□□□ -0.53
RTN4-201ENST00000317610 KRTAP13-1Q8IUC0 172 aa11.72□□□□□ -0.53
RTN4-201ENST00000317610 MMP24-AS1A0A0U1RRL7 71 aa11.71□□□□□ -0.53
RTN4-201ENST00000317610 UBE2DNLQ8IWF7 75 aa11.7□□□□□ -0.54
RTN4-201ENST00000317610 APLNQ9ULZ1 77 aa11.7□□□□□ -0.54
RTN4-201ENST00000317610 NBEAL1Q6ZS30 2694 aa11.68□□□□□ -0.54
RTN4-201ENST00000317610 DYNC2H1Q8NCM8 4307 aaKnown RBP11.68□□□□□ -0.54
RTN4-201ENST00000317610 LYSTQ99698 3801 aa11.68□□□□□ -0.54
RTN4-201ENST00000317610 A8MUN3 132 aa11.65□□□□□ -0.54
RTN4-201ENST00000317610 SRRM2Q9UQ35 2752 aaKnown RBP11.65□□□□□ -0.54
RTN4-201ENST00000317610 ASB16-AS1Q495Z4 193 aa11.65□□□□□ -0.54
RTN4-201ENST00000317610 Q96NJ1 140 aa11.64□□□□□ -0.55
RTN4-201ENST00000317610 PANO1I0J062 215 aa11.62□□□□□ -0.55
RTN4-201ENST00000317610 Q5VV11 94 aa11.62□□□□□ -0.55
RTN4-201ENST00000317610 Q8N9P0 234 aaPredicted RBP11.62□□□□□ -0.55
RTN4-201ENST00000317610 IGLV7-46A0A075B6I9 117 aa11.6□□□□□ -0.55
RTN4-201ENST00000317610 LIMD2Q9BT23 127 aa11.6□□□□□ -0.55
RTN4-201ENST00000317610 COL6A5A8TX70 2615 aa11.59□□□□□ -0.55
RTN4-201ENST00000317610 MOBPQ13875 183 aa11.59□□□□□ -0.55
RTN4-201ENST00000317610 TP53AIP1Q9HCN2 124 aa11.58□□□□□ -0.56
RTN4-201ENST00000317610 LINC00483Q53H64 154 aa11.57□□□□□ -0.56
RTN4-201ENST00000317610 Q6ZRN7 208 aaPredicted RBP11.57□□□□□ -0.56
RTN4-201ENST00000317610 NBDYA0A0U1RRE5 68 aa11.55□□□□□ -0.56
RTN4-201ENST00000317610 STAB2Q8WWQ8 2551 aa11.54□□□□□ -0.56
RTN4-201ENST00000317610 IGLV9-49A0A0B4J1Y8 123 aa11.54□□□□□ -0.56
RTN4-201ENST00000317610 Q6ZR54 194 aa11.54□□□□□ -0.56
RTN4-201ENST00000317610 COA5Q86WW8 74 aa11.54□□□□□ -0.56
RTN4-201ENST00000317610 SPACA4Q8TDM5 124 aa11.54□□□□□ -0.56
RTN4-201ENST00000317610 C8orf17Q9NRJ1 99 aa11.54□□□□□ -0.56
RTN4-201ENST00000317610 TENM2Q9NT68 2774 aa11.51□□□□□ -0.57
RTN4-201ENST00000317610 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.51□□□□□ -0.57
RTN4-201ENST00000317610 COL7A1Q02388 2944 aa11.5□□□□□ -0.57
RTN4-201ENST00000317610 DNAH7Q8WXX0 4024 aa11.5□□□□□ -0.57
RTN4-201ENST00000317610 CD164Q04900 197 aa11.49□□□□□ -0.57
RTN4-201ENST00000317610 PRR15LQ9BU68 103 aa11.48□□□□□ -0.57
RTN4-201ENST00000317610 PLECQ15149 4684 aaKnown RBP11.48□□□□□ -0.57
RTN4-201ENST00000317610 A0A1B0GVX0 72 aa11.48□□□□□ -0.57
RTN4-201ENST00000317610 LOC101927531A0A1B0GV80 90 aa11.47□□□□□ -0.57
RTN4-201ENST00000317610 CHKB-CPT1BH3BT56 60 aa11.47□□□□□ -0.57
RTN4-201ENST00000317610 PMAIP1Q13794 54 aa11.47□□□□□ -0.57
RTN4-201ENST00000317610 PCOTHQ58A44 107 aa11.47□□□□□ -0.57
RTN4-201ENST00000317610 ZNF706Q9Y5V0 76 aaPredicted RBP11.47□□□□□ -0.57
RTN4-201ENST00000317610 WWC2-AS2Q96NR7 200 aa11.46□□□□□ -0.57
RTN4-201ENST00000317610 Q75L30 129 aa11.46□□□□□ -0.58
RTN4-201ENST00000317610 A8MU10 97 aa11.45□□□□□ -0.58
RTN4-201ENST00000317610 MDFIQ99750 246 aa11.43□□□□□ -0.58
RTN4-201ENST00000317610 IGHV6-1A0A0B4J1U7 121 aa11.42□□□□□ -0.58
RTN4-201ENST00000317610 CSMD3Q7Z407 3707 aa11.42□□□□□ -0.58
RTN4-201ENST00000317610 MRPL34Q9BQ48 92 aaKnown RBP11.42□□□□□ -0.58
RTN4-201ENST00000317610 MGAM2Q2M2H8 2515 aa11.4□□□□□ -0.58
RTN4-201ENST00000317610 IGLV5-52A0A0A0MRZ9 124 aa11.39□□□□□ -0.59
RTN4-201ENST00000317610 NUPR2A6NF83 97 aa11.39□□□□□ -0.59
RTN4-201ENST00000317610 CDK2AP2O75956 126 aa11.38□□□□□ -0.59
RTN4-201ENST00000317610 VPS13DQ5THJ4 4388 aa11.38□□□□□ -0.59
RTN4-201ENST00000317610 NDUFS5O43920 106 aa11.38□□□□□ -0.59
RTN4-201ENST00000317610 PSORS1C2Q9UIG4 136 aa11.38□□□□□ -0.59
RTN4-201ENST00000317610 DNAH8Q96JB1 4490 aa11.38□□□□□ -0.59
RTN4-201ENST00000317610 PLAC8Q9NZF1 115 aa11.37□□□□□ -0.59
RTN4-201ENST00000317610 A0A087WTM6 91 aa11.37□□□□□ -0.59
RTN4-201ENST00000317610 LINC01558Q9Y6Z2 57 aa11.37□□□□□ -0.59
RTN4-201ENST00000317610 A0A087X002 238 aa11.35□□□□□ -0.59
RTN4-201ENST00000317610 ZNF861PO60384 105 aa11.35□□□□□ -0.59
RTN4-201ENST00000317610 NOTCH2NLQ7Z3S9 236 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms