RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 C16orf90A8MZG2 172 aa3.02□□□□□ -1.93
PTPN13-201ENST00000316707 F8P00451 2351 aa3.02□□□□□ -1.93
PTPN13-201ENST00000316707 LINC00483Q53H64 154 aa3.01□□□□□ -1.93
PTPN13-201ENST00000316707 PSORS1C2Q9UIG4 136 aa3.01□□□□□ -1.93
PTPN13-201ENST00000316707 ZNF706Q9Y5V0 76 aaPredicted RBP3.01□□□□□ -1.93
PTPN13-201ENST00000316707 TEP1Q99973 2627 aaKnown RBP3.01□□□□□ -1.93
PTPN13-201ENST00000316707 CNBPP62633 177 aaKnown RBP3.01□□□□□ -1.93
PTPN13-201ENST00000316707 C7orf65Q6ZTY9 151 aa3□□□□□ -1.93
PTPN13-201ENST00000316707 USP24Q9UPU5 2620 aa3□□□□□ -1.93
PTPN13-201ENST00000316707 FAM168BA1KXE4 195 aa3□□□□□ -1.93
PTPN13-201ENST00000316707 PLAC4Q8WY50 150 aa3□□□□□ -1.93
PTPN13-201ENST00000316707 MMP24-AS1A0A0U1RRL7 71 aa3□□□□□ -1.93
PTPN13-201ENST00000316707 CSMD2Q7Z408 3487 aa3□□□□□ -1.93
PTPN13-201ENST00000316707 PRLHP81277 87 aa3□□□□□ -1.93
PTPN13-201ENST00000316707 ATRQ13535 2644 aa3□□□□□ -1.93
PTPN13-201ENST00000316707 DEFB116Q30KQ4 102 aa2.99□□□□□ -1.93
PTPN13-201ENST00000316707 KRTAP7-1Q8IUC3 87 aa2.99□□□□□ -1.93
PTPN13-201ENST00000316707 LCA10Q71F78 164 aa2.99□□□□□ -1.93
PTPN13-201ENST00000316707 NIPBLQ6KC79 2804 aaeCLIP2.99□□□□□ -1.93
PTPN13-201ENST00000316707 RBM12B-AS1Q9P1G2 102 aa2.99□□□□□ -1.93
PTPN13-201ENST00000316707 IGKV2-24A0A0C4DH68 120 aa2.98□□□□□ -1.93
PTPN13-201ENST00000316707 A0A087X002 238 aa2.98□□□□□ -1.93
PTPN13-201ENST00000316707 UBR5O95071 2799 aaPredicted RBP2.98□□□□□ -1.93
PTPN13-201ENST00000316707 A6NN06 94 aa2.98□□□□□ -1.93
PTPN13-201ENST00000316707 FASNP49327 2511 aaKnown RBP2.98□□□□□ -1.93
PTPN13-201ENST00000316707 COL12A1Q99715 3063 aa2.98□□□□□ -1.93
PTPN13-201ENST00000316707 ASB16-AS1Q495Z4 193 aa2.98□□□□□ -1.93
PTPN13-201ENST00000316707 Q6ZR54 194 aa2.98□□□□□ -1.93
PTPN13-201ENST00000316707 CRIPTQ9P021 101 aa2.98□□□□□ -1.93
PTPN13-201ENST00000316707 LAMA5O15230 3695 aa2.98□□□□□ -1.93
PTPN13-201ENST00000316707 J3QKU1 62 aa2.98□□□□□ -1.93
PTPN13-201ENST00000316707 A0A0A0MQY5 61 aa2.97□□□□□ -1.93
PTPN13-201ENST00000316707 CR1P17927 2039 aa2.97□□□□□ -1.93
PTPN13-201ENST00000316707 ASH1LQ9NR48 2969 aaKnown RBP2.97□□□□□ -1.93
PTPN13-201ENST00000316707 DMXL1Q9Y485 3027 aa2.97□□□□□ -1.93
PTPN13-201ENST00000316707 A0A096LNI7 61 aa2.97□□□□□ -1.93
PTPN13-201ENST00000316707 PLAC8Q9NZF1 115 aa2.96□□□□□ -1.94
PTPN13-201ENST00000316707 C8orf87E5RJ46 101 aa2.96□□□□□ -1.94
PTPN13-201ENST00000316707 NF1P21359 2839 aa2.96□□□□□ -1.94
PTPN13-201ENST00000316707 PCOTHQ58A44 107 aa2.96□□□□□ -1.94
PTPN13-201ENST00000316707 SSBP3-AS1Q7Z2R9 100 aa2.96□□□□□ -1.94
PTPN13-201ENST00000316707 MRPL34Q9BQ48 92 aaKnown RBP2.95□□□□□ -1.94
PTPN13-201ENST00000316707 CASC10Q5T4H9 136 aa2.95□□□□□ -1.94
PTPN13-201ENST00000316707 A0A0G2JQZ4 141 aa2.95□□□□□ -1.94
PTPN13-201ENST00000316707 A0A1W2PNN7 141 aa2.95□□□□□ -1.94
PTPN13-201ENST00000316707 A0A1B0GVX0 72 aa2.95□□□□□ -1.94
PTPN13-201ENST00000316707 INAFM1C9JVW0 142 aa2.95□□□□□ -1.94
PTPN13-201ENST00000316707 VPS13CQ709C8 3753 aa2.95□□□□□ -1.94
PTPN13-201ENST00000316707 HELZ2Q9BYK8 2649 aaKnown RBP2.95□□□□□ -1.94
PTPN13-201ENST00000316707 CFAP47Q6ZTR5 3102 aa2.94□□□□□ -1.94
PTPN13-201ENST00000316707 RETNLBQ9BQ08 111 aa2.94□□□□□ -1.94
PTPN13-201ENST00000316707 APCP25054 2843 aa2.94□□□□□ -1.94
PTPN13-201ENST00000316707 SVEP1Q4LDE5 3571 aa2.94□□□□□ -1.94
PTPN13-201ENST00000316707 BSNQ9UPA5 3926 aa2.94□□□□□ -1.94
PTPN13-201ENST00000316707 AKAP9Q99996 3911 aa2.93□□□□□ -1.94
PTPN13-201ENST00000316707 SMR3AQ99954 134 aa2.93□□□□□ -1.94
PTPN13-201ENST00000316707 SPINK1P00995 79 aa2.93□□□□□ -1.94
PTPN13-201ENST00000316707 HRES1P13985 223 aa2.93□□□□□ -1.94
PTPN13-201ENST00000316707 HECTD1Q9ULT8 2610 aa2.93□□□□□ -1.94
PTPN13-201ENST00000316707 A8MU10 97 aa2.93□□□□□ -1.94
PTPN13-201ENST00000316707 FAM229AH3BQW9 127 aa2.93□□□□□ -1.94
PTPN13-201ENST00000316707 IGHV6-1A0A0B4J1U7 121 aa2.92□□□□□ -1.94
PTPN13-201ENST00000316707 KRTAP10-11P60412 298 aa2.92□□□□□ -1.94
PTPN13-201ENST00000316707 FBN2P35556 2912 aa2.92□□□□□ -1.94
PTPN13-201ENST00000316707 DCHS1Q96JQ0 3298 aa2.92□□□□□ -1.94
PTPN13-201ENST00000316707 SPINK6Q6UWN8 80 aa2.92□□□□□ -1.94
PTPN13-201ENST00000316707 NSD1Q96L73 2696 aaPredicted RBP2.91□□□□□ -1.94
PTPN13-201ENST00000316707 MAST4O15021 2626 aa2.91□□□□□ -1.94
PTPN13-201ENST00000316707 KRTAP13-1Q8IUC0 172 aa2.91□□□□□ -1.94
PTPN13-201ENST00000316707 A0A1B0GU69 56 aa2.91□□□□□ -1.94
PTPN13-201ENST00000316707 BAHCC1Q9P281 2608 aa2.91□□□□□ -1.94
PTPN13-201ENST00000316707 SPINK7P58062 85 aa2.9□□□□□ -1.95
PTPN13-201ENST00000316707 C1orf134Q5TEV5 83 aa2.9□□□□□ -1.95
PTPN13-201ENST00000316707 NOTCH1P46531 2555 aa2.89□□□□□ -1.95
PTPN13-201ENST00000316707 PRR26Q8N8Z3 221 aa2.89□□□□□ -1.95
PTPN13-201ENST00000316707 Q96NJ1 140 aa2.89□□□□□ -1.95
PTPN13-201ENST00000316707 HIVEP1P15822 2718 aa2.89□□□□□ -1.95
PTPN13-201ENST00000316707 IGLV9-49A0A0B4J1Y8 123 aa2.89□□□□□ -1.95
PTPN13-201ENST00000316707 DMAC1Q96GE9 116 aa2.89□□□□□ -1.95
PTPN13-201ENST00000316707 CELSR1Q9NYQ6 3014 aa2.89□□□□□ -1.95
PTPN13-201ENST00000316707 ITPR2Q14571 2701 aa2.89□□□□□ -1.95
PTPN13-201ENST00000316707 UQCR11O14957 56 aa2.89□□□□□ -1.95
PTPN13-201ENST00000316707 MGAM2Q2M2H8 2515 aa2.88□□□□□ -1.95
PTPN13-201ENST00000316707 STAB2Q8WWQ8 2551 aa2.88□□□□□ -1.95
PTPN13-201ENST00000316707 SPATA8Q6RVD6 105 aa2.88□□□□□ -1.95
PTPN13-201ENST00000316707 CHTF8P0CG12 524 aa2.88□□□□□ -1.95
PTPN13-201ENST00000316707 WWC2-AS2Q96NR7 200 aa2.88□□□□□ -1.95
PTPN13-201ENST00000316707 IGLV7-43P04211 117 aa2.87□□□□□ -1.95
PTPN13-201ENST00000316707 CUBNO60494 3623 aa2.87□□□□□ -1.95
PTPN13-201ENST00000316707 KRTAP1-5Q9BYS1 174 aa2.86□□□□□ -1.95
PTPN13-201ENST00000316707 APLNQ9ULZ1 77 aa2.86□□□□□ -1.95
PTPN13-201ENST00000316707 ZNF861PO60384 105 aa2.86□□□□□ -1.95
PTPN13-201ENST00000316707 KRTAP11-1Q8IUC1 163 aa2.85□□□□□ -1.95
PTPN13-201ENST00000316707 NBDYA0A0U1RRE5 68 aa2.85□□□□□ -1.95
PTPN13-201ENST00000316707 VWFP04275 2813 aa2.85□□□□□ -1.95
PTPN13-201ENST00000316707 FLNBO75369 2602 aaKnown RBP2.85□□□□□ -1.95
PTPN13-201ENST00000316707 LINC00313P59037 77 aa2.85□□□□□ -1.95
PTPN13-201ENST00000316707 CELSR2Q9HCU4 2923 aa2.85□□□□□ -1.95
PTPN13-201ENST00000316707 MIR22HGQ0VDD5 57 aa2.85□□□□□ -1.95
PTPN13-201ENST00000316707 TENM3Q9P273 2699 aa2.85□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms