RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 RANBP2P49792 3224 aaKnown RBP10.65□□□□□ -0.7
SYNPO-201ENST00000307662 Q5W150 140 aa10.65□□□□□ -0.71
SYNPO-201ENST00000307662 DMAC1Q96GE9 116 aa10.64□□□□□ -0.71
SYNPO-201ENST00000307662 ZCCHC13Q8WW36 166 aaKnown RBP10.63□□□□□ -0.71
SYNPO-201ENST00000307662 CENPEQ02224 2701 aa10.62□□□□□ -0.71
SYNPO-201ENST00000307662 CFAP46Q8IYW2 2715 aa10.61□□□□□ -0.71
SYNPO-201ENST00000307662 MAST4O15021 2626 aa10.58□□□□□ -0.72
SYNPO-201ENST00000307662 TNP2Q05952 138 aa10.56□□□□□ -0.72
SYNPO-201ENST00000307662 PLAC8Q9NZF1 115 aa10.55□□□□□ -0.72
SYNPO-201ENST00000307662 ZNF292O60281 2723 aa10.54□□□□□ -0.72
SYNPO-201ENST00000307662 KRTAP26-1Q6PEX3 210 aa10.52□□□□□ -0.73
SYNPO-201ENST00000307662 MGAQ8IWI9 3026 aa10.51□□□□□ -0.73
SYNPO-201ENST00000307662 CAMK2N1Q7Z7J9 78 aa10.51□□□□□ -0.73
SYNPO-201ENST00000307662 LINC00483Q53H64 154 aa10.5□□□□□ -0.73
SYNPO-201ENST00000307662 CFAP54Q96N23 3096 aa10.5□□□□□ -0.73
SYNPO-201ENST00000307662 Q6ZSA8 131 aa10.5□□□□□ -0.73
SYNPO-201ENST00000307662 A0A0C4DFX4 3053 aa10.49□□□□□ -0.73
SYNPO-201ENST00000307662 S4R3F8 94 aa10.45□□□□□ -0.74
SYNPO-201ENST00000307662 ASB16-AS1Q495Z4 193 aa10.45□□□□□ -0.74
SYNPO-201ENST00000307662 LAMA3Q16787 3333 aa10.44□□□□□ -0.74
SYNPO-201ENST00000307662 Q6ZR54 194 aa10.44□□□□□ -0.74
SYNPO-201ENST00000307662 KRTAP29-1A8MX34 341 aaPredicted RBP10.42□□□□□ -0.74
SYNPO-201ENST00000307662 MKI67P46013 3256 aaKnown RBP10.42□□□□□ -0.74
SYNPO-201ENST00000307662 A0A0A0MQY5 61 aa10.41□□□□□ -0.74
SYNPO-201ENST00000307662 ROMO1P60602 79 aa10.4□□□□□ -0.74
SYNPO-201ENST00000307662 CHD6Q8TD26 2715 aa10.39□□□□□ -0.75
SYNPO-201ENST00000307662 AKAP13Q12802 2813 aa10.39□□□□□ -0.75
SYNPO-201ENST00000307662 RPL37P61927 97 aaKnown RBP10.38□□□□□ -0.75
SYNPO-201ENST00000307662 KRTAP4-16G5E9R7 235 aaPredicted RBP10.37□□□□□ -0.75
SYNPO-201ENST00000307662 H1FX-AS1Q4G0G2 97 aa10.35□□□□□ -0.75
SYNPO-201ENST00000307662 LAMA2P24043 3122 aaKnown RBP10.34□□□□□ -0.75
SYNPO-201ENST00000307662 KRTAP1-5Q9BYS1 174 aa10.32□□□□□ -0.76
SYNPO-201ENST00000307662 WDFY4Q6ZS81 3184 aa10.3□□□□□ -0.76
SYNPO-201ENST00000307662 BRCA2P51587 3418 aa10.28□□□□□ -0.76
SYNPO-201ENST00000307662 SPATA8Q6RVD6 105 aa10.27□□□□□ -0.77
SYNPO-201ENST00000307662 TEX15Q9BXT5 2789 aa10.26□□□□□ -0.77
SYNPO-201ENST00000307662 A6NN06 94 aa10.26□□□□□ -0.77
SYNPO-201ENST00000307662 R4GN34 69 aa10.25□□□□□ -0.77
SYNPO-201ENST00000307662 GCN1Q92616 2671 aaKnown RBP10.23□□□□□ -0.77
SYNPO-201ENST00000307662 LCE6AA0A183 80 aa10.21□□□□□ -0.77
SYNPO-201ENST00000307662 TEP1Q99973 2627 aaKnown RBP10.2□□□□□ -0.78
SYNPO-201ENST00000307662 STAB1Q9NY15 2570 aa10.19□□□□□ -0.78
SYNPO-201ENST00000307662 DSPP15924 2871 aaKnown RBP10.19□□□□□ -0.78
SYNPO-201ENST00000307662 PRUNE2Q8WUY3 3088 aa10.19□□□□□ -0.78
SYNPO-201ENST00000307662 UNC79Q9P2D8 2635 aa10.18□□□□□ -0.78
SYNPO-201ENST00000307662 UNC80Q8N2C7 3258 aa10.15□□□□□ -0.79
SYNPO-201ENST00000307662 COL6A5A8TX70 2615 aa10.15□□□□□ -0.79
SYNPO-201ENST00000307662 TRIOO75962 3097 aa10.14□□□□□ -0.79
SYNPO-201ENST00000307662 IGSF10Q6WRI0 2623 aa10.14□□□□□ -0.79
SYNPO-201ENST00000307662 A0A087X002 238 aa10.11□□□□□ -0.79
SYNPO-201ENST00000307662 NOTCH2NLQ7Z3S9 236 aa10.11□□□□□ -0.79
SYNPO-201ENST00000307662 NBEAL1Q6ZS30 2694 aa10.11□□□□□ -0.79
SYNPO-201ENST00000307662 MAP1AP78559 2803 aaPredicted RBP10.11□□□□□ -0.79
SYNPO-201ENST00000307662 PANO1I0J062 215 aa10.1□□□□□ -0.79
SYNPO-201ENST00000307662 NOTCH1P46531 2555 aa10.1□□□□□ -0.79
SYNPO-201ENST00000307662 KRTAP25-1Q3LHN0 102 aa10.09□□□□□ -0.79
SYNPO-201ENST00000307662 VPS13AQ96RL7 3174 aa10.08□□□□□ -0.8
SYNPO-201ENST00000307662 M0QZ58 72 aa10.08□□□□□ -0.8
SYNPO-201ENST00000307662 SETXQ7Z333 2677 aaKnown RBP10.07□□□□□ -0.8
SYNPO-201ENST00000307662 FRYQ5TBA9 3013 aa10.07□□□□□ -0.8
SYNPO-201ENST00000307662 NBEAL2Q6ZNJ1 2754 aa10.06□□□□□ -0.8
SYNPO-201ENST00000307662 M0R2T5 61 aa10.06□□□□□ -0.8
SYNPO-201ENST00000307662 KRTAP10-1P60331 282 aa10.05□□□□□ -0.8
SYNPO-201ENST00000307662 XIRP2A4UGR9 3374 aa10.04□□□□□ -0.8
SYNPO-201ENST00000307662 KRTAP16-1A8MUX0 517 aa10.02□□□□□ -0.81
SYNPO-201ENST00000307662 ADM2Q7Z4H4 148 aa10.02□□□□□ -0.81
SYNPO-201ENST00000307662 KRTAP10-2P60368 255 aa10.01□□□□□ -0.81
SYNPO-201ENST00000307662 A8MU10 97 aa10□□□□□ -0.81
SYNPO-201ENST00000307662 UBR5O95071 2799 aaPredicted RBP10□□□□□ -0.81
SYNPO-201ENST00000307662 SEC61BP60468 96 aaKnown RBP9.97□□□□□ -0.81
SYNPO-201ENST00000307662 KRTAP11-1Q8IUC1 163 aa9.96□□□□□ -0.81
SYNPO-201ENST00000307662 KRTAP7-1Q8IUC3 87 aa9.94□□□□□ -0.82
SYNPO-201ENST00000307662 CDH23Q9H251 3354 aa9.94□□□□□ -0.82
SYNPO-201ENST00000307662 Q5VSD8 79 aa9.88□□□□□ -0.83
SYNPO-201ENST00000307662 FLG2Q5D862 2391 aaPredicted RBP9.86□□□□□ -0.83
SYNPO-201ENST00000307662 DMBT1Q9UGM3 2413 aaPredicted RBP9.86□□□□□ -0.83
SYNPO-201ENST00000307662 ITPR1Q14643 2758 aa9.84□□□□□ -0.83
SYNPO-201ENST00000307662 FLNCQ14315 2725 aa9.82□□□□□ -0.84
SYNPO-201ENST00000307662 RPS29P62273 56 aaKnown RBP9.81□□□□□ -0.84
SYNPO-201ENST00000307662 NSD1Q96L73 2696 aaPredicted RBP9.81□□□□□ -0.84
SYNPO-201ENST00000307662 KRTAP13-1Q8IUC0 172 aa9.8□□□□□ -0.84
SYNPO-201ENST00000307662 KALRNO60229 2985 aa9.8□□□□□ -0.84
SYNPO-201ENST00000307662 NDUFAF8A1L188 74 aa9.8□□□□□ -0.84
SYNPO-201ENST00000307662 Q6ZRN7 208 aaPredicted RBP9.8□□□□□ -0.84
SYNPO-201ENST00000307662 CELSR3Q9NYQ7 3312 aa9.79□□□□□ -0.84
SYNPO-201ENST00000307662 ITPR2Q14571 2701 aa9.79□□□□□ -0.84
SYNPO-201ENST00000307662 LAMA1P25391 3075 aa9.78□□□□□ -0.84
SYNPO-201ENST00000307662 ATMQ13315 3056 aa9.77□□□□□ -0.85
SYNPO-201ENST00000307662 NBEAQ8NFP9 2946 aa9.75□□□□□ -0.85
SYNPO-201ENST00000307662 STAB2Q8WWQ8 2551 aa9.74□□□□□ -0.85
SYNPO-201ENST00000307662 PLAC4Q8WY50 150 aa9.73□□□□□ -0.85
SYNPO-201ENST00000307662 SZT2Q5T011 3432 aa9.73□□□□□ -0.85
SYNPO-201ENST00000307662 BAHCC1Q9P281 2608 aa9.73□□□□□ -0.85
SYNPO-201ENST00000307662 KRTAP13-2Q52LG2 175 aa9.71□□□□□ -0.86
SYNPO-201ENST00000307662 VCANP13611 3396 aa9.71□□□□□ -0.86
SYNPO-201ENST00000307662 FREM2Q5SZK8 3169 aa9.7□□□□□ -0.86
SYNPO-201ENST00000307662 TACC2O95359 2948 aa9.7□□□□□ -0.86
SYNPO-201ENST00000307662 ADGRG4Q8IZF6 3080 aa9.69□□□□□ -0.86
SYNPO-201ENST00000307662 A8MUU9 505 aa9.68□□□□□ -0.86
SYNPO-201ENST00000307662 COL12A1Q99715 3063 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms