RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 PRLHP81277 87 aa2.63□□□□□ -1.99
USH2A-201ENST00000307340 FAM218AQ96MZ4 157 aa2.63□□□□□ -1.99
USH2A-201ENST00000307340 RTL8CO15255 209 aa2.63□□□□□ -1.99
USH2A-201ENST00000307340 COL12A1Q99715 3063 aa2.63□□□□□ -1.99
USH2A-201ENST00000307340 A0A087WVE0 104 aa2.63□□□□□ -1.99
USH2A-201ENST00000307340 A0A1W2PPR1 153 aa2.63□□□□□ -1.99
USH2A-201ENST00000307340 KRTAP16-1A8MUX0 517 aa2.63□□□□□ -1.99
USH2A-201ENST00000307340 HRES1P13985 223 aa2.63□□□□□ -1.99
USH2A-201ENST00000307340 ZNF575Q86XF7 245 aa2.63□□□□□ -1.99
USH2A-201ENST00000307340 CRYBG3Q68DQ2 2970 aa2.62□□□□□ -1.99
USH2A-201ENST00000307340 NIPBLQ6KC79 2804 aaeCLIP2.62□□□□□ -1.99
USH2A-201ENST00000307340 LINC00304Q8N9R0 145 aa2.62□□□□□ -1.99
USH2A-201ENST00000307340 LINC00483Q53H64 154 aa2.62□□□□□ -1.99
USH2A-201ENST00000307340 UNC80Q8N2C7 3258 aa2.62□□□□□ -1.99
USH2A-201ENST00000307340 FLNBO75369 2602 aaKnown RBP2.62□□□□□ -1.99
USH2A-201ENST00000307340 C10orf99Q6UWK7 81 aa2.61□□□□□ -1.99
USH2A-201ENST00000307340 PRR3P79522 188 aaKnown RBP2.61□□□□□ -1.99
USH2A-201ENST00000307340 SETXQ7Z333 2677 aaKnown RBP2.61□□□□□ -1.99
USH2A-201ENST00000307340 NOTCH2NLQ7Z3S9 236 aa2.61□□□□□ -1.99
USH2A-201ENST00000307340 PHF5AQ7RTV0 110 aaKnown RBP2.61□□□□□ -1.99
USH2A-201ENST00000307340 STAB1Q9NY15 2570 aa2.61□□□□□ -1.99
USH2A-201ENST00000307340 HECTD1Q9ULT8 2610 aa2.6□□□□□ -1.99
USH2A-201ENST00000307340 IGSF10Q6WRI0 2623 aa2.6□□□□□ -1.99
USH2A-201ENST00000307340 C18orf65Q6ZTR6 163 aa2.6□□□□□ -1.99
USH2A-201ENST00000307340 FP248Q71RG6 208 aaPredicted RBP2.6□□□□□ -1.99
USH2A-201ENST00000307340 COL6A3P12111 3177 aa2.59□□□□□ -1.99
USH2A-201ENST00000307340 Q6ZR54 194 aa2.59□□□□□ -1.99
USH2A-201ENST00000307340 STAB2Q8WWQ8 2551 aa2.59□□□□□ -1.99
USH2A-201ENST00000307340 NDUFAF8A1L188 74 aa2.59□□□□□ -1.99
USH2A-201ENST00000307340 FLNCQ14315 2725 aa2.59□□□□□ -2
USH2A-201ENST00000307340 IGKV2D-30A0A075B6S6 120 aa2.59□□□□□ -2
USH2A-201ENST00000307340 IGKV2-30P06310 120 aa2.59□□□□□ -2
USH2A-201ENST00000307340 SZT2Q5T011 3432 aa2.59□□□□□ -2
USH2A-201ENST00000307340 PRB1P04280 392 aa2.59□□□□□ -2
USH2A-201ENST00000307340 DEFB116Q30KQ4 102 aa2.58□□□□□ -2
USH2A-201ENST00000307340 PLAC8Q9NZF1 115 aa2.58□□□□□ -2
USH2A-201ENST00000307340 A0A096LNI7 61 aa2.58□□□□□ -2
USH2A-201ENST00000307340 A0A087WTM6 91 aa2.58□□□□□ -2
USH2A-201ENST00000307340 GIG44P09565 113 aaPredicted RBP2.58□□□□□ -2
USH2A-201ENST00000307340 PCOTHQ58A44 107 aa2.58□□□□□ -2
USH2A-201ENST00000307340 PRB2P02812 416 aaPredicted RBP2.57□□□□□ -2
USH2A-201ENST00000307340 MXRA5Q9NR99 2828 aa2.57□□□□□ -2
USH2A-201ENST00000307340 LINC01558Q9Y6Z2 57 aa2.57□□□□□ -2
USH2A-201ENST00000307340 LRCOL1A6NCL2 159 aa2.57□□□□□ -2
USH2A-201ENST00000307340 CELSR1Q9NYQ6 3014 aa2.57□□□□□ -2
USH2A-201ENST00000307340 SPACA4Q8TDM5 124 aa2.57□□□□□ -2
USH2A-201ENST00000307340 COL6A5A8TX70 2615 aa2.57□□□□□ -2
USH2A-201ENST00000307340 C9orf129Q5T035 196 aaKnown RBP2.57□□□□□ -2
USH2A-201ENST00000307340 EYSQ5T1H1 3165 aa2.57□□□□□ -2
USH2A-201ENST00000307340 NF1P21359 2839 aa2.56□□□□□ -2
USH2A-201ENST00000307340 CFAP47Q6ZTR5 3102 aa2.56□□□□□ -2
USH2A-201ENST00000307340 NOTCH1P46531 2555 aa2.56□□□□□ -2
USH2A-201ENST00000307340 KRTAP21-3Q3LHN1 58 aa2.56□□□□□ -2
USH2A-201ENST00000307340 LCE6AA0A183 80 aa2.56□□□□□ -2
USH2A-201ENST00000307340 LOC400499M0QZD8 3231 aa2.56□□□□□ -2
USH2A-201ENST00000307340 Q96NJ1 140 aa2.55□□□□□ -2
USH2A-201ENST00000307340 LINC00472Q9H8W2 130 aa2.55□□□□□ -2
USH2A-201ENST00000307340 NBEAL2Q6ZNJ1 2754 aa2.55□□□□□ -2
USH2A-201ENST00000307340 ANAPC11Q9NYG5 84 aa2.54□□□□□ -2
USH2A-201ENST00000307340 DSCR10P59022 87 aa2.54□□□□□ -2
USH2A-201ENST00000307340 UBR5O95071 2799 aaPredicted RBP2.53□□□□□ -2
USH2A-201ENST00000307340 APLNQ9ULZ1 77 aa2.53□□□□□ -2
USH2A-201ENST00000307340 M0QZ58 72 aa2.52□□□□□ -2.01
USH2A-201ENST00000307340 Q8N9P0 234 aaPredicted RBP2.52□□□□□ -2.01
USH2A-201ENST00000307340 CSAG1Q6PB30 78 aa2.52□□□□□ -2.01
USH2A-201ENST00000307340 A0A1B0GU33 70 aa2.51□□□□□ -2.01
USH2A-201ENST00000307340 A0A1W2PNM2 257 aa2.51□□□□□ -2.01
USH2A-201ENST00000307340 CELSR2Q9HCU4 2923 aa2.51□□□□□ -2.01
USH2A-201ENST00000307340 DCHS2Q6V1P9 2916 aa2.5□□□□□ -2.01
USH2A-201ENST00000307340 K7EIL1 84 aa2.5□□□□□ -2.01
USH2A-201ENST00000307340 OXTP01178 125 aa2.5□□□□□ -2.01
USH2A-201ENST00000307340 KRTAP4-16G5E9R7 235 aaPredicted RBP2.5□□□□□ -2.01
USH2A-201ENST00000307340 KRTAP24-1Q3LI83 254 aa2.5□□□□□ -2.01
USH2A-201ENST00000307340 ZCCHC13Q8WW36 166 aaKnown RBP2.5□□□□□ -2.01
USH2A-201ENST00000307340 PRR26Q8N8Z3 221 aa2.5□□□□□ -2.01
USH2A-201ENST00000307340 PP632Q6XCG6 107 aa2.49□□□□□ -2.01
USH2A-201ENST00000307340 DMBT1Q9UGM3 2413 aaPredicted RBP2.49□□□□□ -2.01
USH2A-201ENST00000307340 HRNRQ86YZ3 2850 aaPredicted RBP2.48□□□□□ -2.01
USH2A-201ENST00000307340 KRTAP10-9P60411 292 aa2.48□□□□□ -2.01
USH2A-201ENST00000307340 RPL37P61927 97 aaKnown RBP2.48□□□□□ -2.01
USH2A-201ENST00000307340 KRTAP1-3Q8IUG1 177 aa2.48□□□□□ -2.01
USH2A-201ENST00000307340 ZANQ9Y493 2812 aa2.48□□□□□ -2.01
USH2A-201ENST00000307340 Q6ZSA8 131 aa2.48□□□□□ -2.01
USH2A-201ENST00000307340 MMP24-AS1A0A0U1RRL7 71 aa2.47□□□□□ -2.01
USH2A-201ENST00000307340 SPATA8Q6RVD6 105 aa2.46□□□□□ -2.02
USH2A-201ENST00000307340 FAM168BA1KXE4 195 aa2.46□□□□□ -2.02
USH2A-201ENST00000307340 WDFY3Q8IZQ1 3526 aa2.46□□□□□ -2.02
USH2A-201ENST00000307340 KRTAP1-1Q07627 177 aa2.45□□□□□ -2.02
USH2A-201ENST00000307340 CASC10Q5T4H9 136 aa2.45□□□□□ -2.02
USH2A-201ENST00000307340 SMR3AQ99954 134 aa2.45□□□□□ -2.02
USH2A-201ENST00000307340 ROMO1P60602 79 aa2.45□□□□□ -2.02
USH2A-201ENST00000307340 Q5VV11 94 aa2.45□□□□□ -2.02
USH2A-201ENST00000307340 SPEGQ15772 3267 aa2.45□□□□□ -2.02
USH2A-201ENST00000307340 KRTAP29-1A8MX34 341 aaPredicted RBP2.45□□□□□ -2.02
USH2A-201ENST00000307340 SPTBN5Q9NRC6 3674 aaKnown RBP2.45□□□□□ -2.02
USH2A-201ENST00000307340 KRTAP10-11P60412 298 aa2.44□□□□□ -2.02
USH2A-201ENST00000307340 J3QL48 77 aa2.44□□□□□ -2.02
USH2A-201ENST00000307340 S4R3F8 94 aa2.44□□□□□ -2.02
USH2A-201ENST00000307340 VWFP04275 2813 aa2.44□□□□□ -2.02
USH2A-201ENST00000307340 FBN2P35556 2912 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms