RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 IGSF10Q6WRI0 2623 aa6.37□□□□□ -1.39
COL6A3-201ENST00000295550 LAMA3Q16787 3333 aa6.37□□□□□ -1.39
COL6A3-201ENST00000295550 A0A0A0MQY5 61 aa6.36□□□□□ -1.39
COL6A3-201ENST00000295550 KRTAP10-3P60369 221 aa6.36□□□□□ -1.39
COL6A3-201ENST00000295550 KRTAP24-1Q3LI83 254 aa6.36□□□□□ -1.39
COL6A3-201ENST00000295550 KRTAP10-11P60412 298 aa6.36□□□□□ -1.39
COL6A3-201ENST00000295550 A0A1B0GU33 70 aa6.35□□□□□ -1.39
COL6A3-201ENST00000295550 ANAPC11Q9NYG5 84 aa6.35□□□□□ -1.39
COL6A3-201ENST00000295550 KRTAP1-1Q07627 177 aa6.33□□□□□ -1.4
COL6A3-201ENST00000295550 PRR26Q8N8Z3 221 aa6.32□□□□□ -1.4
COL6A3-201ENST00000295550 PRAC1Q96KF2 57 aa6.32□□□□□ -1.4
COL6A3-201ENST00000295550 SPRR4Q96PI1 79 aa6.32□□□□□ -1.4
COL6A3-201ENST00000295550 DMAC1Q96GE9 116 aa6.32□□□□□ -1.4
COL6A3-201ENST00000295550 FAM229BQ4G0N7 80 aa6.31□□□□□ -1.4
COL6A3-201ENST00000295550 A0A1W2PNM2 257 aa6.31□□□□□ -1.4
COL6A3-201ENST00000295550 C9orf163Q8N9P6 203 aa6.3□□□□□ -1.4
COL6A3-201ENST00000295550 CSAG1Q6PB30 78 aa6.3□□□□□ -1.4
COL6A3-201ENST00000295550 UBR5O95071 2799 aaPredicted RBP6.3□□□□□ -1.4
COL6A3-201ENST00000295550 FLNCQ14315 2725 aa6.29□□□□□ -1.4
COL6A3-201ENST00000295550 Q5XG85 94 aa6.29□□□□□ -1.4
COL6A3-201ENST00000295550 VPS13AQ96RL7 3174 aa6.29□□□□□ -1.4
COL6A3-201ENST00000295550 CAMK2N1Q7Z7J9 78 aa6.29□□□□□ -1.4
COL6A3-201ENST00000295550 IGLV7-46A0A075B6I9 117 aa6.28□□□□□ -1.4
COL6A3-201ENST00000295550 IGLV7-43P04211 117 aa6.28□□□□□ -1.4
COL6A3-201ENST00000295550 CNBPP62633 177 aaKnown RBP6.27□□□□□ -1.41
COL6A3-201ENST00000295550 PSORS1C2Q9UIG4 136 aa6.27□□□□□ -1.41
COL6A3-201ENST00000295550 LRBAP50851 2863 aa6.27□□□□□ -1.41
COL6A3-201ENST00000295550 CDH23Q9H251 3354 aa6.25□□□□□ -1.41
COL6A3-201ENST00000295550 HRES1P13985 223 aa6.25□□□□□ -1.41
COL6A3-201ENST00000295550 FRYQ5TBA9 3013 aa6.24□□□□□ -1.41
COL6A3-201ENST00000295550 K7EIL1 84 aa6.24□□□□□ -1.41
COL6A3-201ENST00000295550 A0A087WTM6 91 aa6.23□□□□□ -1.41
COL6A3-201ENST00000295550 Q5VV11 94 aa6.23□□□□□ -1.41
COL6A3-201ENST00000295550 Q8N9P0 234 aaPredicted RBP6.23□□□□□ -1.41
COL6A3-201ENST00000295550 NBEAQ8NFP9 2946 aa6.23□□□□□ -1.41
COL6A3-201ENST00000295550 FP248Q71RG6 208 aaPredicted RBP6.23□□□□□ -1.41
COL6A3-201ENST00000295550 WWC2-AS2Q96NR7 200 aa6.22□□□□□ -1.41
COL6A3-201ENST00000295550 LAMA1P25391 3075 aa6.21□□□□□ -1.41
COL6A3-201ENST00000295550 UNC80Q8N2C7 3258 aa6.21□□□□□ -1.42
COL6A3-201ENST00000295550 SMR3BP02814 79 aaPredicted RBP6.21□□□□□ -1.42
COL6A3-201ENST00000295550 LINC01558Q9Y6Z2 57 aa6.21□□□□□ -1.42
COL6A3-201ENST00000295550 SPINK7P58062 85 aa6.2□□□□□ -1.42
COL6A3-201ENST00000295550 PRUNE2Q8WUY3 3088 aa6.2□□□□□ -1.42
COL6A3-201ENST00000295550 SPTBN5Q9NRC6 3674 aaKnown RBP6.19□□□□□ -1.42
COL6A3-201ENST00000295550 CASC10Q5T4H9 136 aa6.19□□□□□ -1.42
COL6A3-201ENST00000295550 CYSTM1Q9H1C7 97 aa6.18□□□□□ -1.42
COL6A3-201ENST00000295550 S4R3F8 94 aa6.18□□□□□ -1.42
COL6A3-201ENST00000295550 WDFY4Q6ZS81 3184 aa6.18□□□□□ -1.42
COL6A3-201ENST00000295550 Q8NDZ9 215 aa6.17□□□□□ -1.42
COL6A3-201ENST00000295550 DNAH14Q0VDD8 3507 aa6.16□□□□□ -1.42
COL6A3-201ENST00000295550 Q6ZSA8 131 aa6.15□□□□□ -1.42
COL6A3-201ENST00000295550 FRYLO94915 3013 aa6.12□□□□□ -1.43
COL6A3-201ENST00000295550 HRNRQ86YZ3 2850 aaPredicted RBP6.11□□□□□ -1.43
COL6A3-201ENST00000295550 ROMO1P60602 79 aa6.11□□□□□ -1.43
COL6A3-201ENST00000295550 TACC2O95359 2948 aa6.11□□□□□ -1.43
COL6A3-201ENST00000295550 ZCCHC13Q8WW36 166 aaKnown RBP6.11□□□□□ -1.43
COL6A3-201ENST00000295550 MMP24-AS1A0A0U1RRL7 71 aa6.11□□□□□ -1.43
COL6A3-201ENST00000295550 SPRR1AP35321 89 aa6.1□□□□□ -1.43
COL6A3-201ENST00000295550 Q5W150 140 aa6.09□□□□□ -1.43
COL6A3-201ENST00000295550 SZT2Q5T011 3432 aa6.09□□□□□ -1.43
COL6A3-201ENST00000295550 XIRP2A4UGR9 3374 aa6.09□□□□□ -1.43
COL6A3-201ENST00000295550 M0R2T5 61 aa6.08□□□□□ -1.44
COL6A3-201ENST00000295550 HIVEP1P15822 2718 aa6.08□□□□□ -1.44
COL6A3-201ENST00000295550 KALRNO60229 2985 aa6.08□□□□□ -1.44
COL6A3-201ENST00000295550 R4GN34 69 aa6.05□□□□□ -1.44
COL6A3-201ENST00000295550 KRTAP16-1A8MUX0 517 aa6.04□□□□□ -1.44
COL6A3-201ENST00000295550 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.03□□□□□ -1.44
COL6A3-201ENST00000295550 VCANP13611 3396 aa6.03□□□□□ -1.44
COL6A3-201ENST00000295550 KRTAP26-1Q6PEX3 210 aa6.03□□□□□ -1.44
COL6A3-201ENST00000295550 REV3LO60673 3130 aa6.03□□□□□ -1.44
COL6A3-201ENST00000295550 RPL37P61927 97 aaKnown RBP6.03□□□□□ -1.44
COL6A3-201ENST00000295550 TNRC18O15417 2968 aaPredicted RBP6.03□□□□□ -1.44
COL6A3-201ENST00000295550 OXTP01178 125 aa6.02□□□□□ -1.45
COL6A3-201ENST00000295550 NF1P21359 2839 aa6.02□□□□□ -1.45
COL6A3-201ENST00000295550 ASB16-AS1Q495Z4 193 aa6.01□□□□□ -1.45
COL6A3-201ENST00000295550 SPRR1BP22528 89 aa6□□□□□ -1.45
COL6A3-201ENST00000295550 TENM1Q9UKZ4 2725 aa6□□□□□ -1.45
COL6A3-201ENST00000295550 H1FX-AS1Q4G0G2 97 aa6□□□□□ -1.45
COL6A3-201ENST00000295550 ASH1LQ9NR48 2969 aaKnown RBP6□□□□□ -1.45
COL6A3-201ENST00000295550 BOD1L1Q8NFC6 3051 aa6□□□□□ -1.45
COL6A3-201ENST00000295550 LINC00472Q9H8W2 130 aa5.98□□□□□ -1.45
COL6A3-201ENST00000295550 TNP2Q05952 138 aa5.97□□□□□ -1.45
COL6A3-201ENST00000295550 PLAC4Q8WY50 150 aa5.97□□□□□ -1.45
COL6A3-201ENST00000295550 ZANQ9Y493 2812 aa5.97□□□□□ -1.45
COL6A3-201ENST00000295550 USP34Q70CQ2 3546 aa5.96□□□□□ -1.45
COL6A3-201ENST00000295550 KRTAP4-16G5E9R7 235 aaPredicted RBP5.95□□□□□ -1.46
COL6A3-201ENST00000295550 M0QZ58 72 aa5.95□□□□□ -1.46
COL6A3-201ENST00000295550 PLAC8Q9NZF1 115 aa5.94□□□□□ -1.46
COL6A3-201ENST00000295550 ZZEF1O43149 2961 aa5.93□□□□□ -1.46
COL6A3-201ENST00000295550 TENM3Q9P273 2699 aa5.93□□□□□ -1.46
COL6A3-201ENST00000295550 CELSR3Q9NYQ7 3312 aa5.92□□□□□ -1.46
COL6A3-201ENST00000295550 ATMQ13315 3056 aa5.92□□□□□ -1.46
COL6A3-201ENST00000295550 KRTAP1-5Q9BYS1 174 aa5.92□□□□□ -1.46
COL6A3-201ENST00000295550 CELSR2Q9HCU4 2923 aa5.91□□□□□ -1.46
COL6A3-201ENST00000295550 ADGRG4Q8IZF6 3080 aa5.91□□□□□ -1.46
COL6A3-201ENST00000295550 NIPBLQ6KC79 2804 aaeCLIP5.91□□□□□ -1.46
COL6A3-201ENST00000295550 SPATA8Q6RVD6 105 aa5.91□□□□□ -1.46
COL6A3-201ENST00000295550 DMXL2Q8TDJ6 3036 aa5.9□□□□□ -1.46
COL6A3-201ENST00000295550 Q6ZR54 194 aa5.89□□□□□ -1.47
COL6A3-201ENST00000295550 ADM2Q7Z4H4 148 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms