RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 Q5VSD8 79 aa7.09□□□□□ -1.27
PTPN4-201ENST00000263708 Q8N9P0 234 aaPredicted RBP7.07□□□□□ -1.28
PTPN4-201ENST00000263708 FAM229BQ4G0N7 80 aa7.06□□□□□ -1.28
PTPN4-201ENST00000263708 ROMO1P60602 79 aa7.06□□□□□ -1.28
PTPN4-201ENST00000263708 STAB1Q9NY15 2570 aa7.05□□□□□ -1.28
PTPN4-201ENST00000263708 SETXQ7Z333 2677 aaKnown RBP7.04□□□□□ -1.28
PTPN4-201ENST00000263708 Q5W150 140 aa7.02□□□□□ -1.29
PTPN4-201ENST00000263708 UNC79Q9P2D8 2635 aa7.02□□□□□ -1.29
PTPN4-201ENST00000263708 LINC01558Q9Y6Z2 57 aa7.02□□□□□ -1.29
PTPN4-201ENST00000263708 KLK9Q2XQG4 91 aa7□□□□□ -1.29
PTPN4-201ENST00000263708 RPL37P61927 97 aaKnown RBP7□□□□□ -1.29
PTPN4-201ENST00000263708 ADM2Q7Z4H4 148 aa6.99□□□□□ -1.29
PTPN4-201ENST00000263708 MMP24-AS1A0A0U1RRL7 71 aa6.97□□□□□ -1.29
PTPN4-201ENST00000263708 DMBT1Q9UGM3 2413 aaPredicted RBP6.95□□□□□ -1.3
PTPN4-201ENST00000263708 BAHCC1Q9P281 2608 aa6.94□□□□□ -1.3
PTPN4-201ENST00000263708 PLAC8Q9NZF1 115 aa6.93□□□□□ -1.3
PTPN4-201ENST00000263708 Q5VV11 94 aa6.93□□□□□ -1.3
PTPN4-201ENST00000263708 C20orf166-AS1Q96NR2 134 aa6.93□□□□□ -1.3
PTPN4-201ENST00000263708 FP248Q71RG6 208 aaPredicted RBP6.92□□□□□ -1.3
PTPN4-201ENST00000263708 ITPR2Q14571 2701 aa6.92□□□□□ -1.3
PTPN4-201ENST00000263708 A0A096LNT2 108 aa6.91□□□□□ -1.3
PTPN4-201ENST00000263708 SPATA8Q6RVD6 105 aa6.91□□□□□ -1.3
PTPN4-201ENST00000263708 ZNF292O60281 2723 aa6.9□□□□□ -1.3
PTPN4-201ENST00000263708 STAB2Q8WWQ8 2551 aa6.9□□□□□ -1.31
PTPN4-201ENST00000263708 KRTAP16-1A8MUX0 517 aa6.86□□□□□ -1.31
PTPN4-201ENST00000263708 Q8NDZ9 215 aa6.85□□□□□ -1.31
PTPN4-201ENST00000263708 Q5XG85 94 aa6.83□□□□□ -1.32
PTPN4-201ENST00000263708 DNAH12Q6ZR08 3092 aa6.83□□□□□ -1.32
PTPN4-201ENST00000263708 CEP350Q5VT06 3117 aa6.82□□□□□ -1.32
PTPN4-201ENST00000263708 KRTAP1-3Q8IUG1 177 aa6.81□□□□□ -1.32
PTPN4-201ENST00000263708 LINC00472Q9H8W2 130 aa6.8□□□□□ -1.32
PTPN4-201ENST00000263708 OXTP01178 125 aa6.8□□□□□ -1.32
PTPN4-201ENST00000263708 IGSF10Q6WRI0 2623 aa6.78□□□□□ -1.32
PTPN4-201ENST00000263708 GOLGB1Q14789 3259 aaKnown RBP6.78□□□□□ -1.32
PTPN4-201ENST00000263708 NBEAL2Q6ZNJ1 2754 aa6.77□□□□□ -1.33
PTPN4-201ENST00000263708 KRTAP1-1Q07627 177 aa6.76□□□□□ -1.33
PTPN4-201ENST00000263708 KRTAP10-1P60331 282 aa6.75□□□□□ -1.33
PTPN4-201ENST00000263708 CYSTM1Q9H1C7 97 aa6.75□□□□□ -1.33
PTPN4-201ENST00000263708 PANO1I0J062 215 aa6.75□□□□□ -1.33
PTPN4-201ENST00000263708 KRTAP26-1Q6PEX3 210 aa6.74□□□□□ -1.33
PTPN4-201ENST00000263708 UTP20O75691 2785 aaKnown RBP6.74□□□□□ -1.33
PTPN4-201ENST00000263708 Q6ZR54 194 aa6.74□□□□□ -1.33
PTPN4-201ENST00000263708 KRTAP10-2P60368 255 aa6.73□□□□□ -1.33
PTPN4-201ENST00000263708 DSPP15924 2871 aaKnown RBP6.72□□□□□ -1.33
PTPN4-201ENST00000263708 NSD1Q96L73 2696 aaPredicted RBP6.71□□□□□ -1.33
PTPN4-201ENST00000263708 SPRR1AP35321 89 aa6.71□□□□□ -1.34
PTPN4-201ENST00000263708 C5orf42Q9H799 3197 aa6.71□□□□□ -1.34
PTPN4-201ENST00000263708 A0A0C4DFX4 3053 aa6.71□□□□□ -1.34
PTPN4-201ENST00000263708 A8MUU9 505 aa6.71□□□□□ -1.34
PTPN4-201ENST00000263708 LCE6AA0A183 80 aa6.7□□□□□ -1.34
PTPN4-201ENST00000263708 APCP25054 2843 aa6.69□□□□□ -1.34
PTPN4-201ENST00000263708 SPRR1BP22528 89 aa6.67□□□□□ -1.34
PTPN4-201ENST00000263708 C10orf95Q9H7T3 257 aa6.67□□□□□ -1.34
PTPN4-201ENST00000263708 KMT2BQ9UMN6 2715 aaPredicted RBP6.67□□□□□ -1.34
PTPN4-201ENST00000263708 KRTAP1-5Q9BYS1 174 aa6.65□□□□□ -1.34
PTPN4-201ENST00000263708 FLNCQ14315 2725 aa6.65□□□□□ -1.35
PTPN4-201ENST00000263708 UBR5O95071 2799 aaPredicted RBP6.64□□□□□ -1.35
PTPN4-201ENST00000263708 TRANK1O15050 2925 aa6.64□□□□□ -1.35
PTPN4-201ENST00000263708 A8MU10 97 aa6.62□□□□□ -1.35
PTPN4-201ENST00000263708 NDUFAF8A1L188 74 aa6.62□□□□□ -1.35
PTPN4-201ENST00000263708 KRTAP25-1Q3LHN0 102 aa6.61□□□□□ -1.35
PTPN4-201ENST00000263708 ITPR1Q14643 2758 aa6.6□□□□□ -1.35
PTPN4-201ENST00000263708 ASB16-AS1Q495Z4 193 aa6.6□□□□□ -1.35
PTPN4-201ENST00000263708 A0A087X002 238 aa6.58□□□□□ -1.36
PTPN4-201ENST00000263708 MGAQ8IWI9 3026 aa6.58□□□□□ -1.36
PTPN4-201ENST00000263708 TNP1P09430 55 aa6.57□□□□□ -1.36
PTPN4-201ENST00000263708 PCNTO95613 3336 aa6.57□□□□□ -1.36
PTPN4-201ENST00000263708 UTRNP46939 3433 aa6.55□□□□□ -1.36
PTPN4-201ENST00000263708 CFAP54Q96N23 3096 aa6.53□□□□□ -1.36
PTPN4-201ENST00000263708 HIVEP1P15822 2718 aa6.51□□□□□ -1.37
PTPN4-201ENST00000263708 NOTCH2NLQ7Z3S9 236 aa6.49□□□□□ -1.37
PTPN4-201ENST00000263708 CHD7Q9P2D1 2997 aa6.48□□□□□ -1.37
PTPN4-201ENST00000263708 CHD9Q3L8U1 2897 aa6.47□□□□□ -1.37
PTPN4-201ENST00000263708 KRTAP10-8P60410 259 aa6.43□□□□□ -1.38
PTPN4-201ENST00000263708 KRTAP29-1A8MX34 341 aaPredicted RBP6.41□□□□□ -1.38
PTPN4-201ENST00000263708 A6NN06 94 aa6.39□□□□□ -1.39
PTPN4-201ENST00000263708 P0C880 135 aa6.38□□□□□ -1.39
PTPN4-201ENST00000263708 RPS29P62273 56 aaKnown RBP6.38□□□□□ -1.39
PTPN4-201ENST00000263708 LRBAP50851 2863 aa6.38□□□□□ -1.39
PTPN4-201ENST00000263708 KRTAP4-16G5E9R7 235 aaPredicted RBP6.37□□□□□ -1.39
PTPN4-201ENST00000263708 A0A1B0GVY2 172 aa6.34□□□□□ -1.39
PTPN4-201ENST00000263708 FRYLO94915 3013 aa6.34□□□□□ -1.4
PTPN4-201ENST00000263708 LAMA2P24043 3122 aaKnown RBP6.31□□□□□ -1.4
PTPN4-201ENST00000263708 TENM1Q9UKZ4 2725 aa6.29□□□□□ -1.4
PTPN4-201ENST00000263708 KRTAP11-1Q8IUC1 163 aa6.28□□□□□ -1.4
PTPN4-201ENST00000263708 PP632Q6XCG6 107 aa6.26□□□□□ -1.41
PTPN4-201ENST00000263708 FRYQ5TBA9 3013 aa6.25□□□□□ -1.41
PTPN4-201ENST00000263708 KRTAP13-2Q52LG2 175 aa6.25□□□□□ -1.41
PTPN4-201ENST00000263708 XIRP2A4UGR9 3374 aa6.24□□□□□ -1.41
PTPN4-201ENST00000263708 Q6ZRN7 208 aaPredicted RBP6.24□□□□□ -1.41
PTPN4-201ENST00000263708 CRYBG3Q68DQ2 2970 aa6.24□□□□□ -1.41
PTPN4-201ENST00000263708 FREM2Q5SZK8 3169 aa6.23□□□□□ -1.41
PTPN4-201ENST00000263708 NF1P21359 2839 aa6.21□□□□□ -1.41
PTPN4-201ENST00000263708 PRO2289Q9P1D8 64 aa6.21□□□□□ -1.42
PTPN4-201ENST00000263708 CELSR2Q9HCU4 2923 aa6.2□□□□□ -1.42
PTPN4-201ENST00000263708 KALRNO60229 2985 aa6.19□□□□□ -1.42
PTPN4-201ENST00000263708 KRTAP10-10P60014 251 aa6.19□□□□□ -1.42
PTPN4-201ENST00000263708 TRIOO75962 3097 aa6.18□□□□□ -1.42
PTPN4-201ENST00000263708 ZANQ9Y493 2812 aa6.18□□□□□ -1.42
PTPN4-201ENST00000263708 PRUNE2Q8WUY3 3088 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 116.1 ms