RNA–Protein interactions for RNA: ENST00000239243.6

MSX2-201, Transcript of msh homeobox 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX2, Length 2,241 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2-201ENST00000239243 NREPQ16612 68 aa14.4□□□□□ -0.1
MSX2-201ENST00000239243 TGP01266 2768 aa14.39□□□□□ -0.11
MSX2-201ENST00000239243 KRTAP13-1Q8IUC0 172 aa14.39□□□□□ -0.11
MSX2-201ENST00000239243 IGLV8-61A0A075B6I0 122 aa14.38□□□□□ -0.11
MSX2-201ENST00000239243 DNAH17Q9UFH2 4485 aa14.38□□□□□ -0.11
MSX2-201ENST00000239243 SPRR4Q96PI1 79 aa14.38□□□□□ -0.11
MSX2-201ENST00000239243 ALMS1Q8TCU4 4167 aa14.34□□□□□ -0.11
MSX2-201ENST00000239243 HECTD4Q9Y4D8 3996 aa14.34□□□□□ -0.11
MSX2-201ENST00000239243 CRYGAP11844 174 aa14.31□□□□□ -0.12
MSX2-201ENST00000239243 IGFL1Q6UW32 110 aa14.31□□□□□ -0.12
MSX2-201ENST00000239243 CCDC179H3BU77 68 aa14.3□□□□□ -0.12
MSX2-201ENST00000239243 SCXQ7RTU7 201 aa14.29□□□□□ -0.12
MSX2-201ENST00000239243 BPY2O14599 106 aa14.28□□□□□ -0.12
MSX2-201ENST00000239243 PSORS1C2Q9UIG4 136 aa14.28□□□□□ -0.12
MSX2-201ENST00000239243 UQCRQO14949 82 aa14.26□□□□□ -0.13
MSX2-201ENST00000239243 COX7CP15954 63 aa14.25□□□□□ -0.13
MSX2-201ENST00000239243 ZNF706Q9Y5V0 76 aaPredicted RBP14.25□□□□□ -0.13
MSX2-201ENST00000239243 SERP2Q8N6R1 65 aa14.22□□□□□ -0.13
MSX2-201ENST00000239243 KRTAP10-2P60368 255 aa14.22□□□□□ -0.13
MSX2-201ENST00000239243 ZNF861PO60384 105 aa14.19□□□□□ -0.14
MSX2-201ENST00000239243 LINC00483Q53H64 154 aa14.18□□□□□ -0.14
MSX2-201ENST00000239243 A0A0G2JQZ4 141 aa14.18□□□□□ -0.14
MSX2-201ENST00000239243 IGKV4-1P06312 121 aa14.17□□□□□ -0.14
MSX2-201ENST00000239243 SMIM20Q8N5G0 67 aa14.15□□□□□ -0.14
MSX2-201ENST00000239243 C9orf153Q5TBE3 101 aa14.14□□□□□ -0.15
MSX2-201ENST00000239243 A0A087WSZ3 146 aa14.14□□□□□ -0.15
MSX2-201ENST00000239243 FRAS1Q86XX4 4008 aa14.13□□□□□ -0.15
MSX2-201ENST00000239243 Q8N9L7 120 aa14.13□□□□□ -0.15
MSX2-201ENST00000239243 RPL37AP61513 92 aaKnown RBP14.13□□□□□ -0.15
MSX2-201ENST00000239243 CIRBP-AS1Q8TBR5 109 aa14.12□□□□□ -0.15
MSX2-201ENST00000239243 Q6ZSA8 131 aa14.11□□□□□ -0.15
MSX2-201ENST00000239243 FAM30AQ9NZY2 134 aa14.11□□□□□ -0.15
MSX2-201ENST00000239243 IGLV7-43P04211 117 aa14.1□□□□□ -0.15
MSX2-201ENST00000239243 SRRM2Q9UQ35 2752 aaKnown RBP14.1□□□□□ -0.15
MSX2-201ENST00000239243 DNAH8Q96JB1 4490 aa14.1□□□□□ -0.15
MSX2-201ENST00000239243 TRAV7A0A075B6U4 112 aa14.07□□□□□ -0.16
MSX2-201ENST00000239243 DNAH11Q96DT5 4516 aa14.07□□□□□ -0.16
MSX2-201ENST00000239243 IGLV9-49A0A0B4J1Y8 123 aa14.07□□□□□ -0.16
MSX2-201ENST00000239243 DSCR10P59022 87 aa14.06□□□□□ -0.16
MSX2-201ENST00000239243 KRTAP10-1P60331 282 aa14.05□□□□□ -0.16
MSX2-201ENST00000239243 DNAH5Q8TE73 4624 aa14.04□□□□□ -0.16
MSX2-201ENST00000239243 HYDINQ4G0P3 5121 aa13.99□□□□□ -0.17
MSX2-201ENST00000239243 FAT2Q9NYQ8 4349 aa13.99□□□□□ -0.17
MSX2-201ENST00000239243 K7EQZ3 153 aa13.99□□□□□ -0.17
MSX2-201ENST00000239243 LCE6AA0A183 80 aa13.97□□□□□ -0.17
MSX2-201ENST00000239243 MOBPQ13875 183 aa13.96□□□□□ -0.17
MSX2-201ENST00000239243 PKD1P98161 4303 aa13.96□□□□□ -0.17
MSX2-201ENST00000239243 LINC00336Q6ZUF6 198 aa13.95□□□□□ -0.18
MSX2-201ENST00000239243 DEFB116Q30KQ4 102 aa13.94□□□□□ -0.18
MSX2-201ENST00000239243 LINC00472Q9H8W2 130 aa13.94□□□□□ -0.18
MSX2-201ENST00000239243 ANAPC11Q9NYG5 84 aa13.92□□□□□ -0.18
MSX2-201ENST00000239243 SS18L2Q9UHA2 77 aa13.92□□□□□ -0.18
MSX2-201ENST00000239243 J3KT08 172 aa13.91□□□□□ -0.18
MSX2-201ENST00000239243 C20orf197Q8N268 126 aa13.9□□□□□ -0.18
MSX2-201ENST00000239243 HCG22E2RYF7 251 aa13.89□□□□□ -0.19
MSX2-201ENST00000239243 OCR1Q9BZK8 76 aa13.88□□□□□ -0.19
MSX2-201ENST00000239243 A8MWP4 228 aa13.86□□□□□ -0.19
MSX2-201ENST00000239243 HRCT1Q6UXD1 115 aa13.84□□□□□ -0.19
MSX2-201ENST00000239243 SACSQ9NZJ4 4579 aa13.84□□□□□ -0.19
MSX2-201ENST00000239243 PRR15Q8IV56 129 aa13.84□□□□□ -0.19
MSX2-201ENST00000239243 CYSTM1Q9H1C7 97 aa13.83□□□□□ -0.2
MSX2-201ENST00000239243 KLKP1Q107X0 134 aa13.83□□□□□ -0.2
MSX2-201ENST00000239243 SSBP3-AS1Q7Z2R9 100 aa13.82□□□□□ -0.2
MSX2-201ENST00000239243 TMEM258P61165 79 aa13.8□□□□□ -0.2
MSX2-201ENST00000239243 NDUFB1O75438 58 aa13.79□□□□□ -0.2
MSX2-201ENST00000239243 CD164Q04900 197 aa13.79□□□□□ -0.2
MSX2-201ENST00000239243 Q96NJ1 140 aa13.78□□□□□ -0.2
MSX2-201ENST00000239243 FAM229BQ4G0N7 80 aa13.77□□□□□ -0.21
MSX2-201ENST00000239243 TMEM254Q8TBM7 123 aa13.75□□□□□ -0.21
MSX2-201ENST00000239243 WFDC13Q8IUB5 93 aa13.75□□□□□ -0.21
MSX2-201ENST00000239243 LRP1BQ9NZR2 4599 aa13.72□□□□□ -0.21
MSX2-201ENST00000239243 SNURFQ9Y675 71 aa13.72□□□□□ -0.21
MSX2-201ENST00000239243 CASC2Q6XLA1 102 aa13.72□□□□□ -0.21
MSX2-201ENST00000239243 A0A1B0GVY2 172 aa13.71□□□□□ -0.21
MSX2-201ENST00000239243 KRTAP29-1A8MX34 341 aaPredicted RBP13.71□□□□□ -0.21
MSX2-201ENST00000239243 NDUFC1O43677 76 aa13.71□□□□□ -0.21
MSX2-201ENST00000239243 H7BZZ5 65 aa13.67□□□□□ -0.22
MSX2-201ENST00000239243 CDK2AP2O75956 126 aa13.67□□□□□ -0.22
MSX2-201ENST00000239243 A0A087X002 238 aa13.67□□□□□ -0.22
MSX2-201ENST00000239243 A0A0U1RQV1 116 aa13.66□□□□□ -0.22
MSX2-201ENST00000239243 C5orf47Q569G3 176 aa13.65□□□□□ -0.22
MSX2-201ENST00000239243 MMP24-AS1A0A0U1RRL7 71 aa13.64□□□□□ -0.23
MSX2-201ENST00000239243 KRTAP1-4P0C5Y4 121 aa13.63□□□□□ -0.23
MSX2-201ENST00000239243 KRTAP13-2Q52LG2 175 aa13.63□□□□□ -0.23
MSX2-201ENST00000239243 ASB16-AS1Q495Z4 193 aa13.62□□□□□ -0.23
MSX2-201ENST00000239243 A0A1B0GVX0 72 aa13.62□□□□□ -0.23
MSX2-201ENST00000239243 hDV103S1A0JD37 113 aa13.6□□□□□ -0.23
MSX2-201ENST00000239243 SPINK6Q6UWN8 80 aa13.6□□□□□ -0.23
MSX2-201ENST00000239243 PKHD1P08F94 4074 aa13.58□□□□□ -0.24
MSX2-201ENST00000239243 C8orf17Q9NRJ1 99 aa13.58□□□□□ -0.24
MSX2-201ENST00000239243 FAM236DA0A1B0GTK5 79 aa13.56□□□□□ -0.24
MSX2-201ENST00000239243 FAM236CP0DP71 79 aa13.56□□□□□ -0.24
MSX2-201ENST00000239243 IGHV6-1A0A0B4J1U7 121 aa13.56□□□□□ -0.24
MSX2-201ENST00000239243 VPS13BQ7Z7G8 4022 aa13.55□□□□□ -0.24
MSX2-201ENST00000239243 PLA2G1BP04054 148 aaKnown RBP13.55□□□□□ -0.24
MSX2-201ENST00000239243 Q5XG85 94 aa13.55□□□□□ -0.24
MSX2-201ENST00000239243 MP68P56378 58 aa13.54□□□□□ -0.24
MSX2-201ENST00000239243 RPS28P62857 69 aaKnown RBP13.51□□□□□ -0.25
MSX2-201ENST00000239243 ATP5EP56381 51 aaPredicted RBP13.5□□□□□ -0.25
MSX2-201ENST00000239243 LIMD2Q9BT23 127 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms