RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 RPL13AP40429 203 aaKnown RBP11.46□□□□□ -0.57
CLN3-260ENST00000637578 C2orf91Q6ZV80 131 aa11.46□□□□□ -0.57
CLN3-260ENST00000637578 DDTP30046 118 aa11.45□□□□□ -0.58
CLN3-260ENST00000637578 TMEM126AQ9H061 195 aa11.45□□□□□ -0.58
CLN3-260ENST00000637578 SMIM6P0DI80 62 aa11.45□□□□□ -0.58
CLN3-260ENST00000637578 HIST1H4GQ99525 98 aa11.45□□□□□ -0.58
CLN3-260ENST00000637578 HIGD1BQ9P298 99 aa11.45□□□□□ -0.58
CLN3-260ENST00000637578 IGLV6-57P01721 117 aa11.44□□□□□ -0.58
CLN3-260ENST00000637578 S100A7L2Q5SY68 101 aa11.44□□□□□ -0.58
CLN3-260ENST00000637578 KCNQ1DNQ9H478 68 aa11.44□□□□□ -0.58
CLN3-260ENST00000637578 PRYO14603 147 aa11.43□□□□□ -0.58
CLN3-260ENST00000637578 LINC00337Q8N6G1 96 aa11.43□□□□□ -0.58
CLN3-260ENST00000637578 LINC00518Q8N0U6 118 aa11.42□□□□□ -0.58
CLN3-260ENST00000637578 UBE2AP49459 152 aa11.41□□□□□ -0.58
CLN3-260ENST00000637578 OR13C6PQ8NH95 151 aa11.41□□□□□ -0.58
CLN3-260ENST00000637578 A4D1N5 150 aa11.39□□□□□ -0.59
CLN3-260ENST00000637578 FAM19A1Q7Z5A9 133 aa11.39□□□□□ -0.59
CLN3-260ENST00000637578 A0A087X002 238 aa11.38□□□□□ -0.59
CLN3-260ENST00000637578 SPRR1AP35321 89 aa11.38□□□□□ -0.59
CLN3-260ENST00000637578 PRLHP81277 87 aa11.38□□□□□ -0.59
CLN3-260ENST00000637578 UQCR10Q9UDW1 63 aa11.38□□□□□ -0.59
CLN3-260ENST00000637578 TRAV23DV6A0A075B6W5 121 aa11.37□□□□□ -0.59
CLN3-260ENST00000637578 KRTAP4-16G5E9R7 235 aaPredicted RBP11.37□□□□□ -0.59
CLN3-260ENST00000637578 CRYGAP11844 174 aa11.36□□□□□ -0.59
CLN3-260ENST00000637578 A6NDN8 102 aa11.35□□□□□ -0.59
CLN3-260ENST00000637578 PRO1933Q9H354 126 aa11.35□□□□□ -0.59
CLN3-260ENST00000637578 ETDCA0A1B0GVM5 59 aa11.34□□□□□ -0.59
CLN3-260ENST00000637578 TAL2Q16559 108 aa11.34□□□□□ -0.59
CLN3-260ENST00000637578 TRAV13-2A0A0B4J235 113 aa11.33□□□□□ -0.6
CLN3-260ENST00000637578 ZNF73O43830 326 aaPredicted RBP11.33□□□□□ -0.6
CLN3-260ENST00000637578 C12orf57Q99622 126 aa11.33□□□□□ -0.6
CLN3-260ENST00000637578 ANAPC11Q9NYG5 84 aa11.33□□□□□ -0.6
CLN3-260ENST00000637578 CBY1Q9Y3M2 126 aa11.33□□□□□ -0.6
CLN3-260ENST00000637578 FAM229BQ4G0N7 80 aa11.33□□□□□ -0.6
CLN3-260ENST00000637578 CEND1Q8N111 149 aa11.32□□□□□ -0.6
CLN3-260ENST00000637578 KRTAP13-2Q52LG2 175 aa11.31□□□□□ -0.6
CLN3-260ENST00000637578 B5MCH6 92 aa11.3□□□□□ -0.6
CLN3-260ENST00000637578 HSD52Q0P140 79 aa11.3□□□□□ -0.6
CLN3-260ENST00000637578 TYMSOSQ8TAI1 123 aa11.3□□□□□ -0.6
CLN3-260ENST00000637578 HIGD2AQ9BW72 106 aa11.29□□□□□ -0.6
CLN3-260ENST00000637578 FXYD2P54710 66 aa11.28□□□□□ -0.6
CLN3-260ENST00000637578 Q6ZRX8 168 aa11.28□□□□□ -0.6
CLN3-260ENST00000637578 RNF213Q63HN8 5207 aa11.27□□□□□ -0.61
CLN3-260ENST00000637578 CFC1BP0CG36 223 aa11.27□□□□□ -0.61
CLN3-260ENST00000637578 CFC1P0CG37 223 aa11.27□□□□□ -0.61
CLN3-260ENST00000637578 C6orf99Q4VX62 202 aa11.27□□□□□ -0.61
CLN3-260ENST00000637578 LPAP08519 4548 aa11.26□□□□□ -0.61
CLN3-260ENST00000637578 HINT1P49773 126 aaPredicted RBP11.25□□□□□ -0.61
CLN3-260ENST00000637578 SMIM11BQ8TCY0 68 aa11.25□□□□□ -0.61
CLN3-260ENST00000637578 SMCR5Q8TEV8 140 aa11.25□□□□□ -0.61
CLN3-260ENST00000637578 Q9BRP9 147 aa11.25□□□□□ -0.61
CLN3-260ENST00000637578 TMEM238LA0A1B0GVL6 79 aa11.24□□□□□ -0.61
CLN3-260ENST00000637578 A6NJY4 79 aa11.24□□□□□ -0.61
CLN3-260ENST00000637578 A0A0B4J2C4 111 aa11.24□□□□□ -0.61
CLN3-260ENST00000637578 TSPAN13O95857 204 aa11.23□□□□□ -0.61
CLN3-260ENST00000637578 RAB37Q96AX2 223 aa11.23□□□□□ -0.61
CLN3-260ENST00000637578 ELOF1P60002 83 aaKnown RBP11.22□□□□□ -0.61
CLN3-260ENST00000637578 TSTD3H0UI37 97 aa11.21□□□□□ -0.61
CLN3-260ENST00000637578 ERC2-IT1O76042 136 aa11.21□□□□□ -0.61
CLN3-260ENST00000637578 COX7BP24311 80 aa11.21□□□□□ -0.61
CLN3-260ENST00000637578 SPRR4Q96PI1 79 aa11.2□□□□□ -0.62
CLN3-260ENST00000637578 TRBV7-6A0A0J9YX20 115 aa11.2□□□□□ -0.62
CLN3-260ENST00000637578 H7C2G1 150 aa11.2□□□□□ -0.62
CLN3-260ENST00000637578 PRR4Q16378 134 aa11.2□□□□□ -0.62
CLN3-260ENST00000637578 NHP2Q9NX24 153 aaKnown RBP11.19□□□□□ -0.62
CLN3-260ENST00000637578 A0A1B0GWB2 263 aa11.18□□□□□ -0.62
CLN3-260ENST00000637578 CTAG1AP78358 180 aa11.18□□□□□ -0.62
CLN3-260ENST00000637578 BVES-AS1Q5T3Y7 98 aa11.17□□□□□ -0.62
CLN3-260ENST00000637578 LINC00304Q8N9R0 145 aa11.17□□□□□ -0.62
CLN3-260ENST00000637578 K7ERJ3 54 aa11.16□□□□□ -0.62
CLN3-260ENST00000637578 PRO1854Q9UHT4 67 aa11.16□□□□□ -0.62
CLN3-260ENST00000637578 ZNF706Q9Y5V0 76 aaPredicted RBP11.16□□□□□ -0.62
CLN3-260ENST00000637578 C3orf22Q8N5N4 141 aa11.16□□□□□ -0.62
CLN3-260ENST00000637578 DHRS4-AS1Q9P1J3 65 aa11.16□□□□□ -0.62
CLN3-260ENST00000637578 VAMP3Q15836 100 aa11.13□□□□□ -0.63
CLN3-260ENST00000637578 Q1RN00 199 aa11.12□□□□□ -0.63
CLN3-260ENST00000637578 ST20-AS1Q8NBB2 130 aa11.11□□□□□ -0.63
CLN3-260ENST00000637578 M0R143 59 aa11.11□□□□□ -0.63
CLN3-260ENST00000637578 LINC00483Q53H64 154 aa11.11□□□□□ -0.63
CLN3-260ENST00000637578 GAGE2AQ6NT46 116 aa11.11□□□□□ -0.63
CLN3-260ENST00000637578 LINC00575Q6W349 94 aa11.08□□□□□ -0.64
CLN3-260ENST00000637578 SPAG11AQ6PDA7 123 aa11.07□□□□□ -0.64
CLN3-260ENST00000637578 TRIAP1O43715 76 aa11.05□□□□□ -0.64
CLN3-260ENST00000637578 SLC25A20O43772 301 aa11.05□□□□□ -0.64
CLN3-260ENST00000637578 RETNLBQ9BQ08 111 aa11.05□□□□□ -0.64
CLN3-260ENST00000637578 hADV29S1A0JD25 119 aa11.03□□□□□ -0.64
CLN3-260ENST00000637578 H0YGX0 51 aa11.02□□□□□ -0.65
CLN3-260ENST00000637578 SPRR1BP22528 89 aa11.01□□□□□ -0.65
CLN3-260ENST00000637578 PSMB2P49721 201 aa11.01□□□□□ -0.65
CLN3-260ENST00000637578 BATFQ16520 125 aa11.01□□□□□ -0.65
CLN3-260ENST00000637578 Q8NBF4 154 aa11.01□□□□□ -0.65
CLN3-260ENST00000637578 DEFB105AQ8NG35 78 aa11.01□□□□□ -0.65
CLN3-260ENST00000637578 FAM218AQ96MZ4 157 aa11.01□□□□□ -0.65
CLN3-260ENST00000637578 LINC01547P58512 204 aaPredicted RBP10.99□□□□□ -0.65
CLN3-260ENST00000637578 IGLV5-48A0A075B6I7 105 aa10.99□□□□□ -0.65
CLN3-260ENST00000637578 C4orf48Q5BLP8 95 aa10.99□□□□□ -0.65
CLN3-260ENST00000637578 Q6ZQY7 126 aa10.99□□□□□ -0.65
CLN3-260ENST00000637578 TEX49A0A1B0GTD5 131 aa10.98□□□□□ -0.65
CLN3-260ENST00000637578 IGLV9-49A0A0B4J1Y8 123 aa10.97□□□□□ -0.65
CLN3-260ENST00000637578 TPRXLQ17RH7 258 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 98.7 ms