RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 REG3GQ6UW15 175 aa12.74□□□□□ -0.37
CLN3-245ENST00000636172 PSORS1C2Q9UIG4 136 aa12.74□□□□□ -0.37
CLN3-245ENST00000636172 CBY1Q9Y3M2 126 aa12.74□□□□□ -0.37
CLN3-245ENST00000636172 PCLOQ9Y6V0 5065 aa12.74□□□□□ -0.37
CLN3-245ENST00000636172 ZNF73O43830 326 aaPredicted RBP12.73□□□□□ -0.37
CLN3-245ENST00000636172 HSPG2P98160 4391 aa12.73□□□□□ -0.37
CLN3-245ENST00000636172 RYR1P21817 5038 aa12.73□□□□□ -0.37
CLN3-245ENST00000636172 SMR3BP02814 79 aaPredicted RBP12.72□□□□□ -0.37
CLN3-245ENST00000636172 SPRR1AP35321 89 aa12.72□□□□□ -0.37
CLN3-245ENST00000636172 RPL28P46779 137 aaKnown RBP12.72□□□□□ -0.37
CLN3-245ENST00000636172 C6orf99Q4VX62 202 aa12.71□□□□□ -0.38
CLN3-245ENST00000636172 KRTAP4-16G5E9R7 235 aaPredicted RBP12.7□□□□□ -0.38
CLN3-245ENST00000636172 COL5A1-AS1Q5SY13 56 aa12.7□□□□□ -0.38
CLN3-245ENST00000636172 LINC00528Q8N1L1 170 aa12.7□□□□□ -0.38
CLN3-245ENST00000636172 DIRC1Q969H9 104 aa12.7□□□□□ -0.38
CLN3-245ENST00000636172 FAT1Q14517 4588 aa12.7□□□□□ -0.38
CLN3-245ENST00000636172 TAX1BP3O14907 124 aa12.68□□□□□ -0.38
CLN3-245ENST00000636172 BCE1O60756 84 aa12.67□□□□□ -0.38
CLN3-245ENST00000636172 C1orf137Q5JT78 98 aa12.67□□□□□ -0.38
CLN3-245ENST00000636172 TRIAP1O43715 76 aa12.67□□□□□ -0.38
CLN3-245ENST00000636172 ETDCA0A1B0GVM5 59 aa12.66□□□□□ -0.38
CLN3-245ENST00000636172 NAA38Q9BRA0 125 aaKnown RBP12.66□□□□□ -0.38
CLN3-245ENST00000636172 VPS13BQ7Z7G8 4022 aa12.65□□□□□ -0.38
CLN3-245ENST00000636172 TRBV7-6A0A0J9YX20 115 aa12.64□□□□□ -0.39
CLN3-245ENST00000636172 B5MCH6 92 aa12.64□□□□□ -0.39
CLN3-245ENST00000636172 PSMB2P49721 201 aa12.64□□□□□ -0.39
CLN3-245ENST00000636172 FAM19A1Q7Z5A9 133 aa12.64□□□□□ -0.39
CLN3-245ENST00000636172 C9orf118A6NHY6 69 aa12.62□□□□□ -0.39
CLN3-245ENST00000636172 COX7BP24311 80 aa12.62□□□□□ -0.39
CLN3-245ENST00000636172 ELOF1P60002 83 aaKnown RBP12.62□□□□□ -0.39
CLN3-245ENST00000636172 RPL37AP61513 92 aaKnown RBP12.62□□□□□ -0.39
CLN3-245ENST00000636172 PRLHP81277 87 aa12.62□□□□□ -0.39
CLN3-245ENST00000636172 Q6ZRX8 168 aa12.62□□□□□ -0.39
CLN3-245ENST00000636172 KRTAP13-1Q8IUC0 172 aa12.62□□□□□ -0.39
CLN3-245ENST00000636172 ABCA13Q86UQ4 5058 aa12.61□□□□□ -0.39
CLN3-245ENST00000636172 H3BUT2 72 aa12.61□□□□□ -0.39
CLN3-245ENST00000636172 VAMP3Q15836 100 aa12.61□□□□□ -0.39
CLN3-245ENST00000636172 IGLV7-43P04211 117 aa12.6□□□□□ -0.39
CLN3-245ENST00000636172 UBE2AP49459 152 aa12.6□□□□□ -0.39
CLN3-245ENST00000636172 H0Y9J4 135 aa12.58□□□□□ -0.4
CLN3-245ENST00000636172 COX6CP09669 75 aa12.58□□□□□ -0.4
CLN3-245ENST00000636172 Q9BRP9 147 aa12.58□□□□□ -0.4
CLN3-245ENST00000636172 KRTAP10-4P60372 401 aaPredicted RBP12.57□□□□□ -0.4
CLN3-245ENST00000636172 H0YGX0 51 aa12.57□□□□□ -0.4
CLN3-245ENST00000636172 SCGB1C2P0DMR2 95 aa12.56□□□□□ -0.4
CLN3-245ENST00000636172 FAM229AH3BQW9 127 aa12.55□□□□□ -0.4
CLN3-245ENST00000636172 ZNF861PO60384 105 aa12.55□□□□□ -0.4
CLN3-245ENST00000636172 SMCR5Q8TEV8 140 aa12.55□□□□□ -0.4
CLN3-245ENST00000636172 CLEC2BQ92478 149 aa12.55□□□□□ -0.4
CLN3-245ENST00000636172 FAM218AQ96MZ4 157 aa12.55□□□□□ -0.4
CLN3-245ENST00000636172 SRRM2Q9UQ35 2752 aaKnown RBP12.55□□□□□ -0.4
CLN3-245ENST00000636172 LINC00575Q6W349 94 aa12.54□□□□□ -0.4
CLN3-245ENST00000636172 A0A1W2PPM0 123 aa12.53□□□□□ -0.4
CLN3-245ENST00000636172 Q5VSD8 79 aa12.53□□□□□ -0.4
CLN3-245ENST00000636172 HIGD2AQ9BW72 106 aa12.53□□□□□ -0.4
CLN3-245ENST00000636172 DHRS4-AS1Q9P1J3 65 aa12.52□□□□□ -0.4
CLN3-245ENST00000636172 PLA2G1BP04054 148 aaKnown RBP12.52□□□□□ -0.41
CLN3-245ENST00000636172 INAFM2P0DMQ5 153 aa12.52□□□□□ -0.41
CLN3-245ENST00000636172 Q8N1X5 172 aa12.52□□□□□ -0.41
CLN3-245ENST00000636172 ERC2-IT1O76042 136 aa12.51□□□□□ -0.41
CLN3-245ENST00000636172 LYRM7Q5U5X0 104 aa12.5□□□□□ -0.41
CLN3-245ENST00000636172 KRTAP4-5Q9BYR2 181 aa12.5□□□□□ -0.41
CLN3-245ENST00000636172 FABP2P12104 132 aa12.49□□□□□ -0.41
CLN3-245ENST00000636172 hADV29S1A0JD25 119 aa12.48□□□□□ -0.41
CLN3-245ENST00000636172 SLC25A20O43772 301 aa12.48□□□□□ -0.41
CLN3-245ENST00000636172 TCL1BO95988 128 aa12.47□□□□□ -0.41
CLN3-245ENST00000636172 LST1O00453 97 aa12.47□□□□□ -0.41
CLN3-245ENST00000636172 A0A1B0GX51 115 aa12.45□□□□□ -0.42
CLN3-245ENST00000636172 TRBV20-1A0A075B6N2 111 aa12.43□□□□□ -0.42
CLN3-245ENST00000636172 ATXN8Q156A1 80 aa12.43□□□□□ -0.42
CLN3-245ENST00000636172 ST20-AS1Q8NBB2 130 aa12.43□□□□□ -0.42
CLN3-245ENST00000636172 SNCGO76070 127 aa12.42□□□□□ -0.42
CLN3-245ENST00000636172 SPINK6Q6UWN8 80 aa12.42□□□□□ -0.42
CLN3-245ENST00000636172 SPCS1Q9Y6A9 102 aa12.42□□□□□ -0.42
CLN3-245ENST00000636172 TRACP01848 142 aa12.42□□□□□ -0.42
CLN3-245ENST00000636172 Q6ZQY7 126 aa12.42□□□□□ -0.42
CLN3-245ENST00000636172 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP12.4□□□□□ -0.42
CLN3-245ENST00000636172 PKHD1L1Q86WI1 4243 aa12.39□□□□□ -0.43
CLN3-245ENST00000636172 DNAL4O96015 105 aa12.37□□□□□ -0.43
CLN3-245ENST00000636172 SPRR4Q96PI1 79 aa12.37□□□□□ -0.43
CLN3-245ENST00000636172 K7EP34 96 aa12.37□□□□□ -0.43
CLN3-245ENST00000636172 LINC01547P58512 204 aaPredicted RBP12.37□□□□□ -0.43
CLN3-245ENST00000636172 H3BMG7 143 aa12.36□□□□□ -0.43
CLN3-245ENST00000636172 DEFB105AQ8NG35 78 aa12.36□□□□□ -0.43
CLN3-245ENST00000636172 ZNF706Q9Y5V0 76 aaPredicted RBP12.36□□□□□ -0.43
CLN3-245ENST00000636172 IGLV5-48A0A075B6I7 105 aa12.35□□□□□ -0.43
CLN3-245ENST00000636172 GAGE2AQ6NT46 116 aa12.34□□□□□ -0.43
CLN3-245ENST00000636172 A0A1B0GV90 55 aa12.33□□□□□ -0.44
CLN3-245ENST00000636172 Q8N377 158 aa12.32□□□□□ -0.44
CLN3-245ENST00000636172 KRTAP1-4P0C5Y4 121 aa12.32□□□□□ -0.44
CLN3-245ENST00000636172 LINC00483Q53H64 154 aa12.32□□□□□ -0.44
CLN3-245ENST00000636172 OCIAD2Q56VL3 154 aa12.32□□□□□ -0.44
CLN3-245ENST00000636172 ORMDL1Q9P0S3 153 aa12.32□□□□□ -0.44
CLN3-245ENST00000636172 TEX49A0A1B0GTD5 131 aa12.31□□□□□ -0.44
CLN3-245ENST00000636172 SPRR1BP22528 89 aa12.31□□□□□ -0.44
CLN3-245ENST00000636172 ANAPC11Q9NYG5 84 aa12.31□□□□□ -0.44
CLN3-245ENST00000636172 C9JAW5 83 aa12.3□□□□□ -0.44
CLN3-245ENST00000636172 GTF2H5Q6ZYL4 71 aa12.3□□□□□ -0.44
CLN3-245ENST00000636172 MTURNQ8N3F0 131 aa12.27□□□□□ -0.44
CLN3-245ENST00000636172 PPDPFLQ8WWR9 84 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms