RNA–Protein interactions for RNA: ENST00000622183.1

CPNE3-213, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 156 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-213ENST00000622183 FXYD4P59646 89 aa1.31□□□□□ -2.2
CPNE3-213ENST00000622183 DEFB112Q30KQ8 113 aa1.31□□□□□ -2.2
CPNE3-213ENST00000622183 SMIM2Q9BVW6 85 aa1.31□□□□□ -2.2
CPNE3-213ENST00000622183 LY6G6CO95867 125 aa1.3□□□□□ -2.2
CPNE3-213ENST00000622183 LINC01590Q5TEZ4 76 aa1.3□□□□□ -2.2
CPNE3-213ENST00000622183 CADP27708 2225 aa1.3□□□□□ -2.2
CPNE3-213ENST00000622183 NCR3O14931 201 aa1.29□□□□□ -2.2
CPNE3-213ENST00000622183 MRPL33O75394 65 aaKnown RBP1.29□□□□□ -2.2
CPNE3-213ENST00000622183 RPL38P63173 70 aaKnown RBP1.29□□□□□ -2.2
CPNE3-213ENST00000622183 TFF3Q07654 80 aa1.29□□□□□ -2.2
CPNE3-213ENST00000622183 C10orf99Q6UWK7 81 aa1.29□□□□□ -2.2
CPNE3-213ENST00000622183 ANKRD17O75179 2603 aaKnown RBP1.28□□□□□ -2.2
CPNE3-213ENST00000622183 A0A096LNT2 108 aa1.28□□□□□ -2.2
CPNE3-213ENST00000622183 A0A1B0GU69 56 aa1.28□□□□□ -2.2
CPNE3-213ENST00000622183 NDUFA1O15239 70 aa1.28□□□□□ -2.2
CPNE3-213ENST00000622183 LINC00308Q8TCZ7 52 aa1.28□□□□□ -2.2
CPNE3-213ENST00000622183 LYNX1G3V0Z9 82 aa1.27□□□□□ -2.21
CPNE3-213ENST00000622183 G3V318 75 aa1.27□□□□□ -2.21
CPNE3-213ENST00000622183 HAMPP81172 84 aa1.27□□□□□ -2.21
CPNE3-213ENST00000622183 ARHGAP5-AS1Q96IT6 56 aa1.27□□□□□ -2.21
CPNE3-213ENST00000622183 TIMM8BQ9Y5J9 83 aaPredicted RBP1.27□□□□□ -2.21
CPNE3-213ENST00000622183 ROS1P08922 2347 aa1.27□□□□□ -2.21
CPNE3-213ENST00000622183 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.26□□□□□ -2.21
CPNE3-213ENST00000622183 Q6ZQY7 126 aa1.26□□□□□ -2.21
CPNE3-213ENST00000622183 RPS27LQ71UM5 84 aaKnown RBP1.26□□□□□ -2.21
CPNE3-213ENST00000622183 CCL19Q99731 98 aa1.26□□□□□ -2.21
CPNE3-213ENST00000622183 KRTAP4-1Q9BYQ7 146 aa1.26□□□□□ -2.21
CPNE3-213ENST00000622183 ALMS1Q8TCU4 4167 aa1.25□□□□□ -2.21
CPNE3-213ENST00000622183 IAPPP10997 89 aa1.25□□□□□ -2.21
CPNE3-213ENST00000622183 KNTC1P50748 2209 aa1.25□□□□□ -2.21
CPNE3-213ENST00000622183 ACYP2P14621 99 aa1.24□□□□□ -2.21
CPNE3-213ENST00000622183 CRIP1P50238 77 aa1.24□□□□□ -2.21
CPNE3-213ENST00000622183 LINC00158P58513 81 aa1.24□□□□□ -2.21
CPNE3-213ENST00000622183 Q8IZM0 81 aa1.24□□□□□ -2.21
CPNE3-213ENST00000622183 SMIM11BQ8TCY0 68 aa1.24□□□□□ -2.21
CPNE3-213ENST00000622183 PTPRQQ9UMZ3 2332 aa1.23□□□□□ -2.21
CPNE3-213ENST00000622183 URB1O60287 2271 aaKnown RBP1.23□□□□□ -2.21
CPNE3-213ENST00000622183 ASXL3Q9C0F0 2248 aa1.23□□□□□ -2.21
CPNE3-213ENST00000622183 GVQW2A0A096LPI5 108 aaPredicted RBP1.23□□□□□ -2.21
CPNE3-213ENST00000622183 POLR2KP53803 58 aaKnown RBP1.23□□□□□ -2.21
CPNE3-213ENST00000622183 PDE4DIPQ5VU43 2346 aa1.23□□□□□ -2.21
CPNE3-213ENST00000622183 CNOT1A5YKK6 2376 aaKnown RBP1.22□□□□□ -2.21
CPNE3-213ENST00000622183 COX6B2Q6YFQ2 88 aa1.22□□□□□ -2.21
CPNE3-213ENST00000622183 PLAC4Q8WY50 150 aa1.22□□□□□ -2.21
CPNE3-213ENST00000622183 ABCA1O95477 2261 aa1.21□□□□□ -2.22
CPNE3-213ENST00000622183 Q6ZRX8 168 aa1.21□□□□□ -2.22
CPNE3-213ENST00000622183 CDKN2A-AS1Q9UH64 79 aa1.21□□□□□ -2.22
CPNE3-213ENST00000622183 SPTY2D1-AS1A0A0U1RR47 76 aa1.2□□□□□ -2.22
CPNE3-213ENST00000622183 LOC730098B7Z3J9 87 aa1.2□□□□□ -2.22
CPNE3-213ENST00000622183 LINC00575Q6W349 94 aa1.2□□□□□ -2.22
CPNE3-213ENST00000622183 AHCTF1Q8WYP5 2266 aa1.19□□□□□ -2.22
CPNE3-213ENST00000622183 USF3Q68DE3 2245 aa1.19□□□□□ -2.22
CPNE3-213ENST00000622183 IGLV5-48A0A075B6I7 105 aa1.19□□□□□ -2.22
CPNE3-213ENST00000622183 K7EQZ3 153 aa1.19□□□□□ -2.22
CPNE3-213ENST00000622183 TTTY10Q9BZA0 68 aa1.19□□□□□ -2.22
CPNE3-213ENST00000622183 TP53AIP1Q9HCN2 124 aa1.19□□□□□ -2.22
CPNE3-213ENST00000622183 I3L2K1 104 aa1.18□□□□□ -2.22
CPNE3-213ENST00000622183 RPL37P61927 97 aaKnown RBP1.18□□□□□ -2.22
CPNE3-213ENST00000622183 SSBP3-AS1Q7Z2R9 100 aa1.18□□□□□ -2.22
CPNE3-213ENST00000622183 DEFB123Q8N688 67 aa1.18□□□□□ -2.22
CPNE3-213ENST00000622183 PRO3102Q9H379 93 aa1.18□□□□□ -2.22
CPNE3-213ENST00000622183 PRB3Q04118 309 aaPredicted RBP1.17□□□□□ -2.22
CPNE3-213ENST00000622183 SPINK13Q1W4C9 94 aa1.17□□□□□ -2.22
CPNE3-213ENST00000622183 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.17□□□□□ -2.226e-10■□□□□ 10.9
CPNE3-213ENST00000622183 DOPEY2Q9Y3R5 2298 aa1.16□□□□□ -2.22
CPNE3-213ENST00000622183 H0YAA0 97 aa1.16□□□□□ -2.22
CPNE3-213ENST00000622183 PRCDQ00LT1 54 aa1.16□□□□□ -2.22
CPNE3-213ENST00000622183 RPL39P62891 51 aaKnown RBP1.15□□□□□ -2.23
CPNE3-213ENST00000622183 HMCN1Q96RW7 5635 aa1.14□□□□□ -2.23
CPNE3-213ENST00000622183 MRPL34Q9BQ48 92 aaKnown RBP1.14□□□□□ -2.23
CPNE3-213ENST00000622183 C6orf48Q9UBA6 75 aa1.14□□□□□ -2.23
CPNE3-213ENST00000622183 CACNA1EQ15878 2313 aa1.14□□□□□ -2.23
CPNE3-213ENST00000622183 CCL22O00626 93 aa1.13□□□□□ -2.23
CPNE3-213ENST00000622183 RPL39LQ96EH5 51 aaKnown RBP1.13□□□□□ -2.23
CPNE3-213ENST00000622183 FCGBPQ9Y6R7 5405 aaPredicted RBP1.12□□□□□ -2.23
CPNE3-213ENST00000622183 RPS27P42677 84 aaKnown RBP1.12□□□□□ -2.23
CPNE3-213ENST00000622183 USMG5Q96IX5 58 aa1.12□□□□□ -2.23
CPNE3-213ENST00000622183 CRIPTQ9P021 101 aa1.12□□□□□ -2.23
CPNE3-213ENST00000622183 ASCC3Q8N3C0 2202 aaKnown RBP1.12□□□□□ -2.23
CPNE3-213ENST00000622183 FAM208BQ5VWN6 2430 aa1.11□□□□□ -2.23
CPNE3-213ENST00000622183 CNTRLQ7Z7A1 2325 aa1.11□□□□□ -2.23
CPNE3-213ENST00000622183 KNL1Q8NG31 2342 aa1.11□□□□□ -2.23
CPNE3-213ENST00000622183 K7EIL1 84 aa1.11□□□□□ -2.23
CPNE3-213ENST00000622183 M0QY20 66 aa1.11□□□□□ -2.23
CPNE3-213ENST00000622183 DEFB131AP59861 70 aa1.11□□□□□ -2.23
CPNE3-213ENST00000622183 PIGYQ3MUY2 71 aa1.11□□□□□ -2.23
CPNE3-213ENST00000622183 MINOS1Q5TGZ0 78 aa1.11□□□□□ -2.23
CPNE3-213ENST00000622183 PIEZO2Q9H5I5 2752 aa1.11□□□□□ -2.23
CPNE3-213ENST00000622183 PLCE1Q9P212 2302 aa1.1□□□□□ -2.23
CPNE3-213ENST00000622183 NAV3Q8IVL0 2385 aa1.1□□□□□ -2.23
CPNE3-213ENST00000622183 MMP24-AS1A0A0U1RRL7 71 aa1.1□□□□□ -2.23
CPNE3-213ENST00000622183 H3BSH0 61 aa1.1□□□□□ -2.23
CPNE3-213ENST00000622183 UBE2DNLQ8IWF7 75 aa1.1□□□□□ -2.23
CPNE3-213ENST00000622183 TPRP12270 2363 aaKnown RBP1.1□□□□□ -2.23
CPNE3-213ENST00000622183 COX6A2Q02221 97 aa1.09□□□□□ -2.23
CPNE3-213ENST00000622183 IGF2RP11717 2491 aa1.09□□□□□ -2.24
CPNE3-213ENST00000622183 KLK9Q2XQG4 91 aa1.08□□□□□ -2.24
CPNE3-213ENST00000622183 H1FX-AS1Q4G0G2 97 aa1.08□□□□□ -2.24
CPNE3-213ENST00000622183 SPINK9Q5DT21 86 aa1.08□□□□□ -2.24
CPNE3-213ENST00000622183 TMEM167AQ8TBQ9 72 aa1.08□□□□□ -2.24
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms