RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 HSBP1L1C9JCN9 74 aa8.01□□□□□ -1.13
LINC00540-202ENST00000616974 ERC2-IT1O76042 136 aa8.01□□□□□ -1.13
LINC00540-202ENST00000616974 TRBV10-2A0A0K0K1G8 114 aa8□□□□□ -1.13
LINC00540-202ENST00000616974 PRYO14603 147 aa8□□□□□ -1.13
LINC00540-202ENST00000616974 S100A7L2Q5SY68 101 aa8□□□□□ -1.13
LINC00540-202ENST00000616974 SMCR5Q8TEV8 140 aa8□□□□□ -1.13
LINC00540-202ENST00000616974 Q9BRP9 147 aa8□□□□□ -1.13
LINC00540-202ENST00000616974 SPATA45Q537H7 98 aa7.99□□□□□ -1.13
LINC00540-202ENST00000616974 B5MCH6 92 aa7.99□□□□□ -1.13
LINC00540-202ENST00000616974 KRTAP13-2Q52LG2 175 aa7.99□□□□□ -1.13
LINC00540-202ENST00000616974 TRAV23DV6A0A075B6W5 121 aa7.98□□□□□ -1.13
LINC00540-202ENST00000616974 COX8AP10176 69 aa7.98□□□□□ -1.13
LINC00540-202ENST00000616974 OR13C6PQ8NH95 151 aa7.98□□□□□ -1.13
LINC00540-202ENST00000616974 AKR1D1P51857 326 aa7.97□□□□□ -1.13
LINC00540-202ENST00000616974 ETDCA0A1B0GVM5 59 aa7.96□□□□□ -1.13
LINC00540-202ENST00000616974 ZNF73O43830 326 aaPredicted RBP7.96□□□□□ -1.14
LINC00540-202ENST00000616974 C2orf91Q6ZV80 131 aa7.96□□□□□ -1.14
LINC00540-202ENST00000616974 C12orf57Q99622 126 aa7.96□□□□□ -1.14
LINC00540-202ENST00000616974 VAMP8Q9BV40 100 aa7.96□□□□□ -1.14
LINC00540-202ENST00000616974 PPDPFQ9H3Y8 114 aa7.96□□□□□ -1.14
LINC00540-202ENST00000616974 Q6ZRX8 168 aa7.94□□□□□ -1.14
LINC00540-202ENST00000616974 C3orf22Q8N5N4 141 aa7.94□□□□□ -1.14
LINC00540-202ENST00000616974 A4D1N5 150 aa7.93□□□□□ -1.14
LINC00540-202ENST00000616974 IFITM1P13164 125 aa7.93□□□□□ -1.14
LINC00540-202ENST00000616974 ST20-AS1Q8NBB2 130 aa7.93□□□□□ -1.14
LINC00540-202ENST00000616974 SPRR4Q96PI1 79 aa7.93□□□□□ -1.14
LINC00540-202ENST00000616974 C6orf99Q4VX62 202 aa7.92□□□□□ -1.14
LINC00540-202ENST00000616974 A6NDN8 102 aa7.91□□□□□ -1.14
LINC00540-202ENST00000616974 RNF213Q63HN8 5207 aa7.91□□□□□ -1.14
LINC00540-202ENST00000616974 Q6ZVH6 145 aa7.91□□□□□ -1.14
LINC00540-202ENST00000616974 HIST1H4GQ99525 98 aa7.9□□□□□ -1.15
LINC00540-202ENST00000616974 DLEU1O43261 78 aa7.89□□□□□ -1.15
LINC00540-202ENST00000616974 CRYGAP11844 174 aa7.89□□□□□ -1.15
LINC00540-202ENST00000616974 GAGE2AQ6NT46 116 aa7.89□□□□□ -1.15
LINC00540-202ENST00000616974 SLC25A34Q6PIV7 304 aa7.89□□□□□ -1.15
LINC00540-202ENST00000616974 LINC00518Q8N0U6 118 aa7.88□□□□□ -1.15
LINC00540-202ENST00000616974 SMIM11BQ8TCY0 68 aa7.88□□□□□ -1.15
LINC00540-202ENST00000616974 TYMSOSQ8TAI1 123 aa7.87□□□□□ -1.15
LINC00540-202ENST00000616974 TSPAN13O95857 204 aa7.87□□□□□ -1.15
LINC00540-202ENST00000616974 ELOF1P60002 83 aaKnown RBP7.86□□□□□ -1.15
LINC00540-202ENST00000616974 S100A12P80511 92 aa7.86□□□□□ -1.15
LINC00540-202ENST00000616974 CFC1BP0CG36 223 aa7.84□□□□□ -1.15
LINC00540-202ENST00000616974 CFC1P0CG37 223 aa7.84□□□□□ -1.15
LINC00540-202ENST00000616974 RPL13AP40429 203 aaKnown RBP7.84□□□□□ -1.15
LINC00540-202ENST00000616974 FXYD2P54710 66 aa7.84□□□□□ -1.15
LINC00540-202ENST00000616974 COX7BP24311 80 aa7.84□□□□□ -1.16
LINC00540-202ENST00000616974 FAM229BQ4G0N7 80 aa7.84□□□□□ -1.16
LINC00540-202ENST00000616974 HIGD1BQ9P298 99 aa7.84□□□□□ -1.16
LINC00540-202ENST00000616974 LINC00483Q53H64 154 aa7.83□□□□□ -1.16
LINC00540-202ENST00000616974 COPS9Q8WXC6 57 aa7.83□□□□□ -1.16
LINC00540-202ENST00000616974 IGLV9-49A0A0B4J1Y8 123 aa7.82□□□□□ -1.16
LINC00540-202ENST00000616974 TRAV13-2A0A0B4J235 113 aa7.82□□□□□ -1.16
LINC00540-202ENST00000616974 H7C2G1 150 aa7.82□□□□□ -1.16
LINC00540-202ENST00000616974 PRO1933Q9H354 126 aa7.82□□□□□ -1.16
LINC00540-202ENST00000616974 RETNLBQ9BQ08 111 aa7.81□□□□□ -1.16
LINC00540-202ENST00000616974 CEND1Q8N111 149 aa7.8□□□□□ -1.16
LINC00540-202ENST00000616974 MOBPQ13875 183 aa7.79□□□□□ -1.16
LINC00540-202ENST00000616974 MUC2Q02817 5179 aa7.79□□□□□ -1.16
LINC00540-202ENST00000616974 LOC105371267A0A1B0GV96 52 aa7.79□□□□□ -1.16
LINC00540-202ENST00000616974 HINT1P49773 126 aaPredicted RBP7.79□□□□□ -1.16
LINC00540-202ENST00000616974 LINC01547P58512 204 aaPredicted RBP7.79□□□□□ -1.16
LINC00540-202ENST00000616974 DEFB105AQ8NG35 78 aa7.79□□□□□ -1.16
LINC00540-202ENST00000616974 ZNF706Q9Y5V0 76 aaPredicted RBP7.79□□□□□ -1.16
LINC00540-202ENST00000616974 K7ERJ3 54 aa7.78□□□□□ -1.16
LINC00540-202ENST00000616974 LINC00304Q8N9R0 145 aa7.78□□□□□ -1.16
LINC00540-202ENST00000616974 Q8NBF4 154 aa7.78□□□□□ -1.16
LINC00540-202ENST00000616974 A0A0G2JQZ4 141 aa7.77□□□□□ -1.17
LINC00540-202ENST00000616974 Q1RN00 199 aa7.77□□□□□ -1.17
LINC00540-202ENST00000616974 A0A1B0GWB2 263 aa7.76□□□□□ -1.17
LINC00540-202ENST00000616974 DHRS4-AS1Q9P1J3 65 aa7.76□□□□□ -1.17
LINC00540-202ENST00000616974 TRBV7-6A0A0J9YX20 115 aa7.75□□□□□ -1.17
LINC00540-202ENST00000616974 UQCR10Q9UDW1 63 aa7.75□□□□□ -1.17
LINC00540-202ENST00000616974 CBY1Q9Y3M2 126 aa7.75□□□□□ -1.17
LINC00540-202ENST00000616974 SMIM29Q86T20 159 aa7.74□□□□□ -1.17
LINC00540-202ENST00000616974 FAM218AQ96MZ4 157 aa7.74□□□□□ -1.17
LINC00540-202ENST00000616974 TAL2Q16559 108 aa7.73□□□□□ -1.17
LINC00540-202ENST00000616974 LINC00575Q6W349 94 aa7.73□□□□□ -1.17
LINC00540-202ENST00000616974 RAB37Q96AX2 223 aa7.73□□□□□ -1.17
LINC00540-202ENST00000616974 NHP2Q9NX24 153 aaKnown RBP7.73□□□□□ -1.17
LINC00540-202ENST00000616974 A0A0B4J2C4 111 aa7.73□□□□□ -1.17
LINC00540-202ENST00000616974 C9orf153Q5TBE3 101 aa7.73□□□□□ -1.17
LINC00540-202ENST00000616974 SPRR1BP22528 89 aa7.72□□□□□ -1.17
LINC00540-202ENST00000616974 Q8N377 158 aa7.72□□□□□ -1.17
LINC00540-202ENST00000616974 HSD52Q0P140 79 aa7.72□□□□□ -1.17
LINC00540-202ENST00000616974 PRR4Q16378 134 aa7.72□□□□□ -1.17
LINC00540-202ENST00000616974 Q6ZQY7 126 aa7.71□□□□□ -1.18
LINC00540-202ENST00000616974 IGLV5-48A0A075B6I7 105 aa7.7□□□□□ -1.18
LINC00540-202ENST00000616974 SMIM6P0DI80 62 aa7.7□□□□□ -1.18
LINC00540-202ENST00000616974 PRO1854Q9UHT4 67 aa7.7□□□□□ -1.18
LINC00540-202ENST00000616974 HRCT1Q6UXD1 115 aa7.69□□□□□ -1.18
LINC00540-202ENST00000616974 TRIAP1O43715 76 aa7.69□□□□□ -1.18
LINC00540-202ENST00000616974 BVES-AS1Q5T3Y7 98 aa7.69□□□□□ -1.18
LINC00540-202ENST00000616974 TEX49A0A1B0GTD5 131 aa7.67□□□□□ -1.18
LINC00540-202ENST00000616974 hADV29S1A0JD25 119 aa7.67□□□□□ -1.18
LINC00540-202ENST00000616974 CTAG1AP78358 180 aa7.67□□□□□ -1.18
LINC00540-202ENST00000616974 CLEC2BQ92478 149 aa7.67□□□□□ -1.18
LINC00540-202ENST00000616974 VAMP3Q15836 100 aa7.66□□□□□ -1.18
LINC00540-202ENST00000616974 TMEM238LA0A1B0GVL6 79 aa7.65□□□□□ -1.18
LINC00540-202ENST00000616974 A6NJY4 79 aa7.65□□□□□ -1.18
LINC00540-202ENST00000616974 SSBP3-AS1Q7Z2R9 100 aa7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms