RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 KRTAP19-2Q3LHN2 52 aa-1.95□□□□□ -2.72
SS18-214ENST00000580003 CCDC58Q4VC31 144 aa-1.95□□□□□ -2.72
SS18-214ENST00000580003 NCOA3Q9Y6Q9 1424 aa-1.95□□□□□ -2.72
SS18-214ENST00000580003 SHROOM2Q13796 1616 aa-1.95□□□□□ -2.72
SS18-214ENST00000580003 SMARCA2P51531 1590 aa-1.96□□□□□ -2.72
SS18-214ENST00000580003 LOC100130705A0A1B0GUX0 176 aa-1.96□□□□□ -2.72
SS18-214ENST00000580003 TRAPPC2P0DI81 140 aa-1.96□□□□□ -2.72
SS18-214ENST00000580003 TRAPPC2BP0DI82 140 aa-1.96□□□□□ -2.72
SS18-214ENST00000580003 GNG11P61952 73 aa-1.96□□□□□ -2.72
SS18-214ENST00000580003 XRN1Q8IZH2 1706 aaKnown RBP-1.97□□□□□ -2.72
SS18-214ENST00000580003 I3L3M4 83 aa-1.97□□□□□ -2.72
SS18-214ENST00000580003 ABCC10Q5T3U5 1492 aa-1.97□□□□□ -2.72
SS18-214ENST00000580003 MBD5Q9P267 1494 aa-1.98□□□□□ -2.73
SS18-214ENST00000580003 MMP24-AS1A0A0U1RRL7 71 aa-1.98□□□□□ -2.73
SS18-214ENST00000580003 LCE6AA0A183 80 aa-1.98□□□□□ -2.73
SS18-214ENST00000580003 FAM223BA6NKX1 122 aa-1.98□□□□□ -2.73
SS18-214ENST00000580003 MANBALQ9NQG1 85 aa-1.98□□□□□ -2.73
SS18-214ENST00000580003 CDKN2A-AS1Q9UH64 79 aa-1.98□□□□□ -2.73
SS18-214ENST00000580003 DNAH12Q6ZR08 3092 aa-1.98□□□□□ -2.73
SS18-214ENST00000580003 CEP170BQ9Y4F5 1589 aaPredicted RBP-1.98□□□□□ -2.73
SS18-214ENST00000580003 ASPMQ8IZT6 3477 aa-1.98□□□□□ -2.73
SS18-214ENST00000580003 ZNF831Q5JPB2 1677 aa-1.99□□□□□ -2.73
SS18-214ENST00000580003 QRICH2Q9H0J4 1663 aa-1.99□□□□□ -2.73
SS18-214ENST00000580003 C4AP0C0L4 1744 aa-1.99□□□□□ -2.73
SS18-214ENST00000580003 C4BP0C0L5 1744 aa-1.99□□□□□ -2.73
SS18-214ENST00000580003 AKAIN1P0CW23 69 aa-1.99□□□□□ -2.73
SS18-214ENST00000580003 SAA2P0DJI9 122 aaPredicted RBP-1.99□□□□□ -2.73
SS18-214ENST00000580003 DEFB136Q30KP8 78 aa-1.99□□□□□ -2.73
SS18-214ENST00000580003 LCN9Q8WX39 176 aa-1.99□□□□□ -2.73
SS18-214ENST00000580003 ADGRL2O95490 1459 aa-2□□□□□ -2.73
SS18-214ENST00000580003 DIP2CQ9Y2E4 1556 aa-2□□□□□ -2.73
SS18-214ENST00000580003 FAM24AA6NFZ4 105 aa-2□□□□□ -2.73
SS18-214ENST00000580003 PP6455Q8WZ26 134 aa-2□□□□□ -2.73
SS18-214ENST00000580003 HIGD1BQ9P298 99 aa-2□□□□□ -2.73
SS18-214ENST00000580003 LINC01546A6NGU7 62 aa-2.01□□□□□ -2.73
SS18-214ENST00000580003 A8MTW9 85 aa-2.01□□□□□ -2.73
SS18-214ENST00000580003 OOSP1A8MZH6 123 aa-2.01□□□□□ -2.73
SS18-214ENST00000580003 HEPN1Q6WQI6 88 aa-2.01□□□□□ -2.73
SS18-214ENST00000580003 C12orf57Q99622 126 aa-2.01□□□□□ -2.73
SS18-214ENST00000580003 PRO1854Q9UHT4 67 aa-2.01□□□□□ -2.73
SS18-214ENST00000580003 MAST1Q9Y2H9 1570 aa-2.02□□□□□ -2.73
SS18-214ENST00000580003 Q0VG73 95 aa-2.02□□□□□ -2.73
SS18-214ENST00000580003 C1orf54Q8WWF1 131 aa-2.02□□□□□ -2.73
SS18-214ENST00000580003 PLEKHH2Q8IVE3 1493 aa-2.02□□□□□ -2.73
SS18-214ENST00000580003 PHLPP1O60346 1717 aa-2.03□□□□□ -2.73
SS18-214ENST00000580003 A0A1B0GU69 56 aa-2.03□□□□□ -2.73
SS18-214ENST00000580003 NAP1L6A6NFF2 107 aa-2.03□□□□□ -2.73
SS18-214ENST00000580003 DPH3P1Q9H4G8 78 aa-2.03□□□□□ -2.73
SS18-214ENST00000580003 A2ML1A8K2U0 1454 aa-2.03□□□□□ -2.73
SS18-214ENST00000580003 MRC2Q9UBG0 1479 aa-2.03□□□□□ -2.73
SS18-214ENST00000580003 RGPD2P0DJD1 1756 aa-2.03□□□□□ -2.73
SS18-214ENST00000580003 CEP250Q9BV73 2442 aa-2.03□□□□□ -2.74
SS18-214ENST00000580003 TRAV30A0A087WSZ9 112 aa-2.04□□□□□ -2.74
SS18-214ENST00000580003 ANKRD36A6QL64 1941 aa-2.04□□□□□ -2.74
SS18-214ENST00000580003 TSC22D3Q99576 134 aa-2.04□□□□□ -2.74
SS18-214ENST00000580003 UBE2D4Q9Y2X8 147 aa-2.04□□□□□ -2.74
SS18-214ENST00000580003 ANKRD36CQ5JPF3 1778 aa-2.05□□□□□ -2.74
SS18-214ENST00000580003 KIAA1551Q9HCM1 1747 aa-2.05□□□□□ -2.74
SS18-214ENST00000580003 NDUFA2O43678 99 aa-2.05□□□□□ -2.74
SS18-214ENST00000580003 DEFB106AQ8N104 65 aa-2.05□□□□□ -2.74
SS18-214ENST00000580003 FOCADQ5VW36 1801 aa-2.05□□□□□ -2.74
SS18-214ENST00000580003 PKD1L3Q7Z443 1732 aa-2.05□□□□□ -2.74
SS18-214ENST00000580003 ROBO1Q9Y6N7 1651 aa-2.06□□□□□ -2.74
SS18-214ENST00000580003 PLXNC1O60486 1568 aa-2.06□□□□□ -2.74
SS18-214ENST00000580003 CENPFP49454 3210 aa-2.06□□□□□ -2.74
SS18-214ENST00000580003 IGLV5-48A0A075B6I7 105 aa-2.06□□□□□ -2.74
SS18-214ENST00000580003 CCL22O00626 93 aa-2.06□□□□□ -2.74
SS18-214ENST00000580003 NDUFA3O95167 84 aa-2.06□□□□□ -2.74
SS18-214ENST00000580003 TOGARAM1Q9Y4F4 1720 aa-2.06□□□□□ -2.74
SS18-214ENST00000580003 TNRC6CQ9HCJ0 1690 aaKnown RBP-2.06□□□□□ -2.74
SS18-214ENST00000580003 EDC4Q6P2E9 1401 aaKnown RBP-2.07□□□□□ -2.74
SS18-214ENST00000580003 SCAPERQ9BY12 1400 aa-2.07□□□□□ -2.74
SS18-214ENST00000580003 LY75O60449 1722 aa-2.07□□□□□ -2.74
SS18-214ENST00000580003 PIK3C2BO00750 1634 aa-2.07□□□□□ -2.74
SS18-214ENST00000580003 CUX1P39880 1505 aa-2.07□□□□□ -2.74
SS18-214ENST00000580003 NLRP1Q9C000 1473 aa-2.07□□□□□ -2.74
SS18-214ENST00000580003 NUP188Q5SRE5 1749 aa-2.08□□□□□ -2.74
SS18-214ENST00000580003 K7EP13 123 aa-2.08□□□□□ -2.74
SS18-214ENST00000580003 SNCAP37840 140 aa-2.08□□□□□ -2.74
SS18-214ENST00000580003 SFTA2Q6UW10 78 aa-2.08□□□□□ -2.74
SS18-214ENST00000580003 UNC13AQ9UPW8 1703 aa-2.08□□□□□ -2.74
SS18-214ENST00000580003 USP32Q8NFA0 1604 aa-2.09□□□□□ -2.74
SS18-214ENST00000580003 CDH23Q9H251 3354 aa-2.09□□□□□ -2.74
SS18-214ENST00000580003 DEFB130BP0DP73 79 aa-2.09□□□□□ -2.74
SS18-214ENST00000580003 DEFB130AP0DP74 79 aa-2.09□□□□□ -2.74
SS18-214ENST00000580003 ATP7BP35670 1465 aa-2.09□□□□□ -2.74
SS18-214ENST00000580003 DNMBPQ6XZF7 1577 aa-2.1□□□□□ -2.75
SS18-214ENST00000580003 CRYBG1Q9Y4K1 1723 aa-2.1□□□□□ -2.75
SS18-214ENST00000580003 M0QZ58 72 aa-2.1□□□□□ -2.75
SS18-214ENST00000580003 LEAP2Q969E1 77 aa-2.1□□□□□ -2.75
SS18-214ENST00000580003 WIZO95785 1651 aa-2.1□□□□□ -2.75
SS18-214ENST00000580003 SCN7AQ01118 1682 aa-2.1□□□□□ -2.75
SS18-214ENST00000580003 CLIP1P30622 1438 aa-2.1□□□□□ -2.75
SS18-214ENST00000580003 LRRC37AA6NMS7 1700 aa-2.11□□□□□ -2.75
SS18-214ENST00000580003 C6orf201Q7Z4U5 140 aa-2.11□□□□□ -2.75
SS18-214ENST00000580003 VAMP8Q9BV40 100 aa-2.11□□□□□ -2.75
SS18-214ENST00000580003 RGPD3A6NKT7 1758 aaPredicted RBP-2.11□□□□□ -2.75
SS18-214ENST00000580003 RGPD4Q7Z3J3 1758 aa-2.11□□□□□ -2.75
SS18-214ENST00000580003 BRCA2P51587 3418 aa-2.11□□□□□ -2.75
SS18-214ENST00000580003 CUL7Q14999 1698 aa-2.12□□□□□ -2.75
Retrieved 100 of 20,778 RNA–protein pairs in 85.4 ms