RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 A6NJY4 79 aa10.48□□□□□ -0.73
NUP88-210ENST00000574867 SPRR1AP35321 89 aa10.47□□□□□ -0.73
NUP88-210ENST00000574867 KRTAP4-5Q9BYR2 181 aa10.47□□□□□ -0.73
NUP88-210ENST00000574867 A6NDN8 102 aa10.46□□□□□ -0.73
NUP88-210ENST00000574867 SRRM2Q9UQ35 2752 aaKnown RBP10.45□□□□□ -0.74
NUP88-210ENST00000574867 RPL28P46779 137 aaKnown RBP10.45□□□□□ -0.74
NUP88-210ENST00000574867 UBE2AP49459 152 aa10.45□□□□□ -0.74
NUP88-210ENST00000574867 SPINK6Q6UWN8 80 aa10.45□□□□□ -0.74
NUP88-210ENST00000574867 FAM19A1Q7Z5A9 133 aa10.45□□□□□ -0.74
NUP88-210ENST00000574867 ZNF73O43830 326 aaPredicted RBP10.44□□□□□ -0.74
NUP88-210ENST00000574867 ZNF861PO60384 105 aa10.44□□□□□ -0.74
NUP88-210ENST00000574867 BATFQ16520 125 aa10.44□□□□□ -0.74
NUP88-210ENST00000574867 ETDCA0A1B0GVM5 59 aa10.43□□□□□ -0.74
NUP88-210ENST00000574867 COL5A1-AS1Q5SY13 56 aa10.43□□□□□ -0.74
NUP88-210ENST00000574867 A0A0B4J2C4 111 aa10.43□□□□□ -0.74
NUP88-210ENST00000574867 KRTAP4-16G5E9R7 235 aaPredicted RBP10.43□□□□□ -0.74
NUP88-210ENST00000574867 C21orf62-AS1Q17RA5 79 aa10.43□□□□□ -0.74
NUP88-210ENST00000574867 KRTAP13-1Q8IUC0 172 aa10.43□□□□□ -0.74
NUP88-210ENST00000574867 H0Y9J4 135 aa10.42□□□□□ -0.74
NUP88-210ENST00000574867 PCP4P48539 62 aa10.42□□□□□ -0.74
NUP88-210ENST00000574867 FXYD2P54710 66 aa10.42□□□□□ -0.74
NUP88-210ENST00000574867 INAFM2P0DMQ5 153 aa10.42□□□□□ -0.74
NUP88-210ENST00000574867 CFC1BP0CG36 223 aa10.41□□□□□ -0.74
NUP88-210ENST00000574867 CFC1P0CG37 223 aa10.41□□□□□ -0.74
NUP88-210ENST00000574867 PRLHP81277 87 aa10.41□□□□□ -0.74
NUP88-210ENST00000574867 DIRC1Q969H9 104 aa10.41□□□□□ -0.74
NUP88-210ENST00000574867 RAB37Q96AX2 223 aa10.41□□□□□ -0.74
NUP88-210ENST00000574867 HINT1P49773 126 aaPredicted RBP10.4□□□□□ -0.74
NUP88-210ENST00000574867 RPL13AP40429 203 aaKnown RBP10.4□□□□□ -0.75
NUP88-210ENST00000574867 B5MCH6 92 aa10.38□□□□□ -0.75
NUP88-210ENST00000574867 Q6ZRX8 168 aa10.38□□□□□ -0.75
NUP88-210ENST00000574867 C6orf99Q4VX62 202 aa10.37□□□□□ -0.75
NUP88-210ENST00000574867 SMIM11BQ8TCY0 68 aa10.37□□□□□ -0.75
NUP88-210ENST00000574867 TRBV7-6A0A0J9YX20 115 aa10.36□□□□□ -0.75
NUP88-210ENST00000574867 NHP2Q9NX24 153 aaKnown RBP10.36□□□□□ -0.75
NUP88-210ENST00000574867 BVES-AS1Q5T3Y7 98 aa10.35□□□□□ -0.75
NUP88-210ENST00000574867 PRO1854Q9UHT4 67 aa10.35□□□□□ -0.75
NUP88-210ENST00000574867 ABCA13Q86UQ4 5058 aa10.35□□□□□ -0.75
NUP88-210ENST00000574867 HIGD2AQ9BW72 106 aa10.35□□□□□ -0.75
NUP88-210ENST00000574867 PKHD1L1Q86WI1 4243 aa10.34□□□□□ -0.75
NUP88-210ENST00000574867 A0A1B0GWB2 263 aa10.34□□□□□ -0.75
NUP88-210ENST00000574867 ELOF1P60002 83 aaKnown RBP10.34□□□□□ -0.75
NUP88-210ENST00000574867 COX7BP24311 80 aa10.34□□□□□ -0.75
NUP88-210ENST00000574867 SMCR5Q8TEV8 140 aa10.32□□□□□ -0.76
NUP88-210ENST00000574867 H7C2G1 150 aa10.31□□□□□ -0.76
NUP88-210ENST00000574867 VAMP3Q15836 100 aa10.31□□□□□ -0.76
NUP88-210ENST00000574867 Q9BRP9 147 aa10.31□□□□□ -0.76
NUP88-210ENST00000574867 Q1RN00 199 aa10.3□□□□□ -0.76
NUP88-210ENST00000574867 DHRS4-AS1Q9P1J3 65 aa10.3□□□□□ -0.76
NUP88-210ENST00000574867 K7ERJ3 54 aa10.3□□□□□ -0.76
NUP88-210ENST00000574867 FLG2Q5D862 2391 aaPredicted RBP10.29□□□□□ -0.76
NUP88-210ENST00000574867 ZNF706Q9Y5V0 76 aaPredicted RBP10.28□□□□□ -0.76
NUP88-210ENST00000574867 UBE2V1Q13404 147 aa10.27□□□□□ -0.77
NUP88-210ENST00000574867 OXTP01178 125 aa10.26□□□□□ -0.77
NUP88-210ENST00000574867 KRTAP1-4P0C5Y4 121 aa10.26□□□□□ -0.77
NUP88-210ENST00000574867 PCLOQ9Y6V0 5065 aa10.25□□□□□ -0.77
NUP88-210ENST00000574867 ERC2-IT1O76042 136 aa10.24□□□□□ -0.77
NUP88-210ENST00000574867 SPRR4Q96PI1 79 aa10.24□□□□□ -0.77
NUP88-210ENST00000574867 SLC25A20O43772 301 aa10.23□□□□□ -0.77
NUP88-210ENST00000574867 TSPAN13O95857 204 aa10.23□□□□□ -0.77
NUP88-210ENST00000574867 LINC01600Q96MT4 127 aa10.23□□□□□ -0.77
NUP88-210ENST00000574867 KRTAP29-1A8MX34 341 aaPredicted RBP10.22□□□□□ -0.77
NUP88-210ENST00000574867 H0YGX0 51 aa10.22□□□□□ -0.77
NUP88-210ENST00000574867 LINC00575Q6W349 94 aa10.22□□□□□ -0.77
NUP88-210ENST00000574867 TRIAP1O43715 76 aa10.21□□□□□ -0.77
NUP88-210ENST00000574867 PSMB2P49721 201 aa10.21□□□□□ -0.78
NUP88-210ENST00000574867 FAM229BQ4G0N7 80 aa10.21□□□□□ -0.78
NUP88-210ENST00000574867 MYCBP2O75592 4640 aa10.2□□□□□ -0.78
NUP88-210ENST00000574867 COX6CP09669 75 aa10.19□□□□□ -0.78
NUP88-210ENST00000574867 hADV29S1A0JD25 119 aa10.18□□□□□ -0.78
NUP88-210ENST00000574867 LINC00483Q53H64 154 aa10.18□□□□□ -0.78
NUP88-210ENST00000574867 SNCGO76070 127 aa10.18□□□□□ -0.78
NUP88-210ENST00000574867 CRYGAP11844 174 aa10.17□□□□□ -0.78
NUP88-210ENST00000574867 GAGE2AQ6NT46 116 aa10.17□□□□□ -0.78
NUP88-210ENST00000574867 ST20-AS1Q8NBB2 130 aa10.17□□□□□ -0.78
NUP88-210ENST00000574867 ANAPC11Q9NYG5 84 aa10.16□□□□□ -0.78
NUP88-210ENST00000574867 PRR26Q8N8Z3 221 aa10.15□□□□□ -0.78
NUP88-210ENST00000574867 LRP1Q07954 4544 aaKnown RBP10.15□□□□□ -0.78
NUP88-210ENST00000574867 FAT3Q8TDW7 4589 aa10.15□□□□□ -0.78
NUP88-210ENST00000574867 A0A1B0GX51 115 aa10.14□□□□□ -0.79
NUP88-210ENST00000574867 A0A087X002 238 aa10.14□□□□□ -0.79
NUP88-210ENST00000574867 SPRR1BP22528 89 aa10.14□□□□□ -0.79
NUP88-210ENST00000574867 J3QL48 77 aa10.13□□□□□ -0.79
NUP88-210ENST00000574867 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP10.13□□□□□ -0.79
NUP88-210ENST00000574867 FAM218AQ96MZ4 157 aa10.13□□□□□ -0.79
NUP88-210ENST00000574867 IGLV5-48A0A075B6I7 105 aa10.13□□□□□ -0.79
NUP88-210ENST00000574867 Q6ZQY7 126 aa10.13□□□□□ -0.79
NUP88-210ENST00000574867 TEX49A0A1B0GTD5 131 aa10.12□□□□□ -0.79
NUP88-210ENST00000574867 TAX1BP3O14907 124 aa10.12□□□□□ -0.79
NUP88-210ENST00000574867 MT1HL1P0DM35 61 aa10.11□□□□□ -0.79
NUP88-210ENST00000574867 KRTAP10-8P60410 259 aa10.11□□□□□ -0.79
NUP88-210ENST00000574867 VPS25Q9BRG1 176 aa10.11□□□□□ -0.79
NUP88-210ENST00000574867 SCGB1C2P0DMR2 95 aa10.11□□□□□ -0.79
NUP88-210ENST00000574867 CLEC2BQ92478 149 aa10.11□□□□□ -0.79
NUP88-210ENST00000574867 OCIAD2Q56VL3 154 aa10.1□□□□□ -0.79
NUP88-210ENST00000574867 DEFB105AQ8NG35 78 aa10.1□□□□□ -0.79
NUP88-210ENST00000574867 LINC01547P58512 204 aaPredicted RBP10.1□□□□□ -0.79
NUP88-210ENST00000574867 KRTAP13-2Q52LG2 175 aa10.09□□□□□ -0.79
NUP88-210ENST00000574867 LYRM7Q5U5X0 104 aa10.08□□□□□ -0.8
NUP88-210ENST00000574867 TYMSOSQ8TAI1 123 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms