RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 PCOTHQ58A44 107 aa1.91□□□□□ -2.1
VPS35-208ENST00000568612 WFDC10BQ8IUB3 73 aa1.91□□□□□ -2.1
VPS35-208ENST00000568612 C15orf56Q8N910 161 aa1.91□□□□□ -2.1
VPS35-208ENST00000568612 TP53AIP1Q9HCN2 124 aa1.91□□□□□ -2.1
VPS35-208ENST00000568612 UTRNP46939 3433 aa1.91□□□□□ -2.1
VPS35-208ENST00000568612 IGKV2-24A0A0C4DH68 120 aa1.9□□□□□ -2.11
VPS35-208ENST00000568612 SPINT4Q6UDR6 99 aa1.9□□□□□ -2.11
VPS35-208ENST00000568612 ICE1Q9Y2F5 2266 aa1.9□□□□□ -2.11
VPS35-208ENST00000568612 GVQW2A0A096LPI5 108 aaPredicted RBP1.89□□□□□ -2.11
VPS35-208ENST00000568612 LYNX1G3V0Z9 82 aa1.89□□□□□ -2.11
VPS35-208ENST00000568612 IGLV7-43P04211 117 aa1.89□□□□□ -2.11
VPS35-208ENST00000568612 SPINK13Q1W4C9 94 aa1.89□□□□□ -2.11
VPS35-208ENST00000568612 CAMK2N1Q7Z7J9 78 aa1.89□□□□□ -2.11
VPS35-208ENST00000568612 CCL19Q99731 98 aa1.89□□□□□ -2.11
VPS35-208ENST00000568612 MINOS1-NBL1R4GNA1 71 aa1.89□□□□□ -2.11
VPS35-208ENST00000568612 ABCA4P78363 2273 aa1.89□□□□□ -2.11
VPS35-208ENST00000568612 ASXL3Q9C0F0 2248 aa1.89□□□□□ -2.11
VPS35-208ENST00000568612 SPTBN1Q01082 2364 aaKnown RBP1.88□□□□□ -2.11
VPS35-208ENST00000568612 MMP24-AS1A0A0U1RRL7 71 aa1.88□□□□□ -2.11
VPS35-208ENST00000568612 FAM168BA1KXE4 195 aa1.88□□□□□ -2.11
VPS35-208ENST00000568612 ACYP2P14621 99 aa1.88□□□□□ -2.11
VPS35-208ENST00000568612 DEFB116Q30KQ4 102 aa1.88□□□□□ -2.11
VPS35-208ENST00000568612 LINC00304Q8N9R0 145 aa1.88□□□□□ -2.11
VPS35-208ENST00000568612 ANAPC11Q9NYG5 84 aa1.88□□□□□ -2.11
VPS35-208ENST00000568612 C6orf48Q9UBA6 75 aa1.88□□□□□ -2.11
VPS35-208ENST00000568612 MGAQ8IWI9 3026 aa1.88□□□□□ -2.11
VPS35-208ENST00000568612 ANKRD17O75179 2603 aaKnown RBP1.87□□□□□ -2.11
VPS35-208ENST00000568612 SZT2Q5T011 3432 aa1.87□□□□□ -2.11
VPS35-208ENST00000568612 NBDYA0A0U1RRE5 68 aa1.87□□□□□ -2.11
VPS35-208ENST00000568612 H3BUA1 57 aa1.87□□□□□ -2.11
VPS35-208ENST00000568612 DEFB133Q30KQ1 61 aa1.87□□□□□ -2.11
VPS35-208ENST00000568612 KRTAP5-2Q701N4 177 aa1.87□□□□□ -2.11
VPS35-208ENST00000568612 KRTAP11-1Q8IUC1 163 aa1.87□□□□□ -2.11
VPS35-208ENST00000568612 Q96NJ1 140 aa1.87□□□□□ -2.11
VPS35-208ENST00000568612 RHPN1-AS1Q9BWJ2 59 aa1.87□□□□□ -2.11
VPS35-208ENST00000568612 CFAP54Q96N23 3096 aa1.87□□□□□ -2.11
VPS35-208ENST00000568612 LY6G6CO95867 125 aa1.86□□□□□ -2.11
VPS35-208ENST00000568612 WNK2Q9Y3S1 2297 aa1.86□□□□□ -2.11
VPS35-208ENST00000568612 TECTAO75443 2155 aa1.85□□□□□ -2.11
VPS35-208ENST00000568612 WNK1Q9H4A3 2382 aa1.85□□□□□ -2.11
VPS35-208ENST00000568612 DEFB132Q7Z7B7 95 aa1.85□□□□□ -2.11
VPS35-208ENST00000568612 USMG5Q96IX5 58 aa1.85□□□□□ -2.11
VPS35-208ENST00000568612 G3V318 75 aa1.84□□□□□ -2.11
VPS35-208ENST00000568612 DEFB131AP59861 70 aa1.84□□□□□ -2.11
VPS35-208ENST00000568612 RPL37AP61513 92 aaKnown RBP1.84□□□□□ -2.11
VPS35-208ENST00000568612 CLPSL2Q6UWE3 100 aa1.84□□□□□ -2.11
VPS35-208ENST00000568612 PSORS1C2Q9UIG4 136 aa1.84□□□□□ -2.11
VPS35-208ENST00000568612 VPS13AQ96RL7 3174 aa1.84□□□□□ -2.12
VPS35-208ENST00000568612 OBSCNQ5VST9 7968 aa1.84□□□□□ -2.12
VPS35-208ENST00000568612 SPTBN5Q9NRC6 3674 aaKnown RBP1.83□□□□□ -2.12
VPS35-208ENST00000568612 EP400Q96L91 3159 aa1.83□□□□□ -2.12
VPS35-208ENST00000568612 SPTBN2O15020 2390 aa1.83□□□□□ -2.12
VPS35-208ENST00000568612 KRTAP13-3Q3SY46 172 aa1.83□□□□□ -2.12
VPS35-208ENST00000568612 IGFL1Q6UW32 110 aa1.83□□□□□ -2.12
VPS35-208ENST00000568612 Q6ZRX8 168 aa1.83□□□□□ -2.12
VPS35-208ENST00000568612 SSBP3-AS1Q7Z2R9 100 aa1.83□□□□□ -2.12
VPS35-208ENST00000568612 C5orf56Q8N8D9 126 aa1.83□□□□□ -2.12
VPS35-208ENST00000568612 CUL9Q8IWT3 2517 aa1.83□□□□□ -2.12
VPS35-208ENST00000568612 ATRXP46100 2492 aa1.82□□□□□ -2.12
VPS35-208ENST00000568612 UNC80Q8N2C7 3258 aa1.82□□□□□ -2.12
VPS35-208ENST00000568612 A0A1B0GU33 70 aa1.82□□□□□ -2.12
VPS35-208ENST00000568612 A0A1W2PNN7 141 aa1.82□□□□□ -2.12
VPS35-208ENST00000568612 H0YAA0 97 aa1.82□□□□□ -2.12
VPS35-208ENST00000568612 DEFB109BQ30KR1 87 aa1.82□□□□□ -2.12
VPS35-208ENST00000568612 UNQ6190/PRO20217Q6UXQ8 127 aa1.82□□□□□ -2.12
VPS35-208ENST00000568612 DEFB105AQ8NG35 78 aa1.82□□□□□ -2.12
VPS35-208ENST00000568612 XIRP2A4UGR9 3374 aa1.82□□□□□ -2.12
VPS35-208ENST00000568612 AHCTF1Q8WYP5 2266 aa1.82□□□□□ -2.12
VPS35-208ENST00000568612 RANBP2P49792 3224 aaKnown RBP1.81□□□□□ -2.12
VPS35-208ENST00000568612 A0A0G2JQZ4 141 aa1.81□□□□□ -2.12
VPS35-208ENST00000568612 GIG44P09565 113 aaPredicted RBP1.81□□□□□ -2.12
VPS35-208ENST00000568612 HTN1P15515 57 aa1.81□□□□□ -2.12
VPS35-208ENST00000568612 SPRR1AP35321 89 aa1.81□□□□□ -2.12
VPS35-208ENST00000568612 LCE3AQ5TA76 89 aa1.81□□□□□ -2.12
VPS35-208ENST00000568612 DEFB103AP81534 67 aa1.8□□□□□ -2.12
VPS35-208ENST00000568612 CNOT1A5YKK6 2376 aaKnown RBP1.8□□□□□ -2.12
VPS35-208ENST00000568612 NBEAQ8NFP9 2946 aa1.8□□□□□ -2.12
VPS35-208ENST00000568612 CFAP47Q6ZTR5 3102 aa1.8□□□□□ -2.12
VPS35-208ENST00000568612 ZZEF1O43149 2961 aa1.79□□□□□ -2.12
VPS35-208ENST00000568612 MKI67P46013 3256 aaKnown RBP1.79□□□□□ -2.12
VPS35-208ENST00000568612 C16orf74Q96GX8 76 aa1.79□□□□□ -2.12
VPS35-208ENST00000568612 MRPL34Q9BQ48 92 aaKnown RBP1.79□□□□□ -2.12
VPS35-208ENST00000568612 KRTAP4-3Q9BYR4 195 aa1.79□□□□□ -2.12
VPS35-208ENST00000568612 U3KQA8 63 aa1.79□□□□□ -2.12
VPS35-208ENST00000568612 COL6A6A6NMZ7 2263 aa1.79□□□□□ -2.12
VPS35-208ENST00000568612 PKDREJQ9NTG1 2253 aa1.79□□□□□ -2.12
VPS35-208ENST00000568612 IGF2RP11717 2491 aa1.79□□□□□ -2.12
VPS35-208ENST00000568612 CHD7Q9P2D1 2997 aa1.79□□□□□ -2.12
VPS35-208ENST00000568612 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.78□□□□□ -2.121e-8■■□□□ 13.8
VPS35-208ENST00000568612 TPRXLQ17RH7 258 aa1.78□□□□□ -2.12
VPS35-208ENST00000568612 C4orf3Q8WVX3 66 aa1.78□□□□□ -2.12
VPS35-208ENST00000568612 ZFHX2Q9C0A1 2572 aaPredicted RBP1.77□□□□□ -2.13
VPS35-208ENST00000568612 DNAH12Q6ZR08 3092 aa1.77□□□□□ -2.13
VPS35-208ENST00000568612 CRIPTQ9P021 101 aa1.77□□□□□ -2.13
VPS35-208ENST00000568612 USP34Q70CQ2 3546 aa1.77□□□□□ -2.13
VPS35-208ENST00000568612 FAM186AA6NE01 2351 aa1.77□□□□□ -2.13
VPS35-208ENST00000568612 CHD6Q8TD26 2715 aa1.76□□□□□ -2.13
VPS35-208ENST00000568612 TNRC18O15417 2968 aaPredicted RBP1.76□□□□□ -2.13
VPS35-208ENST00000568612 CACNA1BQ00975 2339 aa1.76□□□□□ -2.13
VPS35-208ENST00000568612 Q6ZSA8 131 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms