RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 DDX60LQ5H9U9 1706 aaKnown RBP0.38□□□□□ -2.35
VPS35-207ENST00000568191 ANKRD50Q9ULJ7 1429 aa0.38□□□□□ -2.35
VPS35-207ENST00000568191 HECTD1Q9ULT8 2610 aa0.37□□□□□ -2.35
VPS35-207ENST00000568191 MROH2AA6NES4 1674 aa0.37□□□□□ -2.35
VPS35-207ENST00000568191 ITSN2Q9NZM3 1697 aa0.37□□□□□ -2.35
VPS35-207ENST00000568191 GLI2P10070 1586 aa0.37□□□□□ -2.35
VPS35-207ENST00000568191 DIP2AQ14689 1571 aa0.37□□□□□ -2.35
VPS35-207ENST00000568191 NWD1Q149M9 1564 aa0.37□□□□□ -2.35
VPS35-207ENST00000568191 FXYD6-FXYD2A0A087WZ82 144 aa0.37□□□□□ -2.35
VPS35-207ENST00000568191 LCE6AA0A183 80 aa0.37□□□□□ -2.35
VPS35-207ENST00000568191 SFTA3P0C7M3 94 aa0.37□□□□□ -2.35
VPS35-207ENST00000568191 COX7BP24311 80 aa0.37□□□□□ -2.35
VPS35-207ENST00000568191 ATXN8Q156A1 80 aa0.37□□□□□ -2.35
VPS35-207ENST00000568191 NREPQ16612 68 aa0.37□□□□□ -2.35
VPS35-207ENST00000568191 GNG13Q9P2W3 67 aa0.37□□□□□ -2.35
VPS35-207ENST00000568191 LY75O60449 1722 aa0.37□□□□□ -2.35
VPS35-207ENST00000568191 TJP1Q07157 1748 aa0.37□□□□□ -2.35
VPS35-207ENST00000568191 ABCA10Q8WWZ4 1543 aa0.37□□□□□ -2.35
VPS35-207ENST00000568191 CROCC2H7BZ55 1655 aa0.37□□□□□ -2.35
VPS35-207ENST00000568191 MAST1Q9Y2H9 1570 aa0.36□□□□□ -2.35
VPS35-207ENST00000568191 UBR5O95071 2799 aaPredicted RBP0.36□□□□□ -2.35
VPS35-207ENST00000568191 MEGF8Q7Z7M0 2845 aa0.36□□□□□ -2.35
VPS35-207ENST00000568191 A0A0D9SFI3 127 aa0.36□□□□□ -2.35
VPS35-207ENST00000568191 A0A0D9SG42 100 aa0.36□□□□□ -2.35
VPS35-207ENST00000568191 C3orf79P0CE67 100 aa0.36□□□□□ -2.35
VPS35-207ENST00000568191 DEFB123Q8N688 67 aa0.36□□□□□ -2.35
VPS35-207ENST00000568191 CNFNQ9BYD5 112 aa0.36□□□□□ -2.35
VPS35-207ENST00000568191 TP53AIP1Q9HCN2 124 aa0.36□□□□□ -2.35
VPS35-207ENST00000568191 ABCC6O95255 1503 aa0.36□□□□□ -2.35
VPS35-207ENST00000568191 BPTFQ12830 3046 aa0.36□□□□□ -2.35
VPS35-207ENST00000568191 EEA1Q15075 1411 aa0.36□□□□□ -2.35
VPS35-207ENST00000568191 C3P01024 1663 aa0.36□□□□□ -2.35
VPS35-207ENST00000568191 TNRC6CQ9HCJ0 1690 aaKnown RBP0.36□□□□□ -2.35
VPS35-207ENST00000568191 PCNX1Q96RV3 2341 aa0.36□□□□□ -2.35
VPS35-207ENST00000568191 PKD1L2Q7Z442 2459 aa0.36□□□□□ -2.35
VPS35-207ENST00000568191 USP24Q9UPU5 2620 aa0.35□□□□□ -2.35
VPS35-207ENST00000568191 PRXQ9BXM0 1461 aa0.35□□□□□ -2.35
VPS35-207ENST00000568191 RNF17Q9BXT8 1623 aaKnown RBP0.35□□□□□ -2.35
VPS35-207ENST00000568191 BIVM-ERCC5R4GMW8 1640 aa0.35□□□□□ -2.35
VPS35-207ENST00000568191 SYCP2Q9BX26 1530 aa0.35□□□□□ -2.35
VPS35-207ENST00000568191 APC2O95996 2303 aa0.35□□□□□ -2.35
VPS35-207ENST00000568191 SPTY2D1-AS1A0A0U1RR47 76 aa0.35□□□□□ -2.35
VPS35-207ENST00000568191 K7EQZ3 153 aa0.35□□□□□ -2.35
VPS35-207ENST00000568191 NDUFA4O00483 81 aa0.35□□□□□ -2.35
VPS35-207ENST00000568191 RPL38P63173 70 aaKnown RBP0.35□□□□□ -2.35
VPS35-207ENST00000568191 PIGYQ3MUY2 71 aa0.35□□□□□ -2.35
VPS35-207ENST00000568191 SMIM5Q71RC9 77 aa0.35□□□□□ -2.35
VPS35-207ENST00000568191 FAM103A1Q9BTL3 118 aaKnown RBP0.35□□□□□ -2.35
VPS35-207ENST00000568191 PRO0255Q9UI72 69 aa0.35□□□□□ -2.35
VPS35-207ENST00000568191 EP300Q09472 2414 aaPredicted RBP0.35□□□□□ -2.35
VPS35-207ENST00000568191 UNC79Q9P2D8 2635 aa0.34□□□□□ -2.35
VPS35-207ENST00000568191 ANKRD36CQ5JPF3 1778 aa0.34□□□□□ -2.35
VPS35-207ENST00000568191 CLASP1Q7Z460 1538 aa0.34□□□□□ -2.35
VPS35-207ENST00000568191 HIVEP3Q5T1R4 2406 aa0.34□□□□□ -2.35
VPS35-207ENST00000568191 CPSF4LA6NMK7 179 aaKnown RBP0.34□□□□□ -2.36
VPS35-207ENST00000568191 C4AP0C0L4 1744 aa0.34□□□□□ -2.36
VPS35-207ENST00000568191 C4BP0C0L5 1744 aa0.34□□□□□ -2.36
VPS35-207ENST00000568191 COX6A2Q02221 97 aa0.34□□□□□ -2.36
VPS35-207ENST00000568191 RIF1Q5UIP0 2472 aaKnown RBP0.34□□□□□ -2.36
VPS35-207ENST00000568191 ENHOQ6UWT2 76 aa0.34□□□□□ -2.36
VPS35-207ENST00000568191 Q8IZM0 81 aa0.34□□□□□ -2.36
VPS35-207ENST00000568191 USMG5Q96IX5 58 aa0.34□□□□□ -2.36
VPS35-207ENST00000568191 CRIPTQ9P021 101 aa0.34□□□□□ -2.36
VPS35-207ENST00000568191 CACNA1AO00555 2505 aa0.34□□□□□ -2.36
VPS35-207ENST00000568191 A0A1B0GUL6 1792 aa0.34□□□□□ -2.36
VPS35-207ENST00000568191 MUC5ACP98088 5654 aa0.34□□□□□ -2.36
VPS35-207ENST00000568191 IGSF10Q6WRI0 2623 aa0.34□□□□□ -2.36
VPS35-207ENST00000568191 REV3LO60673 3130 aa0.33□□□□□ -2.36
VPS35-207ENST00000568191 ACACAQ13085 2346 aa0.33□□□□□ -2.36
VPS35-207ENST00000568191 UGGT1Q9NYU2 1555 aa0.33□□□□□ -2.36
VPS35-207ENST00000568191 LINC01549A6NIU2 74 aa0.33□□□□□ -2.36
VPS35-207ENST00000568191 I3L3M4 83 aa0.33□□□□□ -2.36
VPS35-207ENST00000568191 MRPL34Q9BQ48 92 aaKnown RBP0.33□□□□□ -2.36
VPS35-207ENST00000568191 UBL5Q9BZL1 73 aa0.33□□□□□ -2.36
VPS35-207ENST00000568191 LRRK2Q5S007 2527 aa0.33□□□□□ -2.36
VPS35-207ENST00000568191 CHD9Q3L8U1 2897 aa0.33□□□□□ -2.36
VPS35-207ENST00000568191 CPS1P31327 1500 aa0.33□□□□□ -2.36
VPS35-207ENST00000568191 DSPP15924 2871 aaKnown RBP0.32□□□□□ -2.36
VPS35-207ENST00000568191 NCOR2Q9Y618 2525 aa0.32□□□□□ -2.36
VPS35-207ENST00000568191 FAM186AA6NE01 2351 aa0.32□□□□□ -2.36
VPS35-207ENST00000568191 EPG5Q9HCE0 2579 aa0.32□□□□□ -2.36
VPS35-207ENST00000568191 SPG11Q96JI7 2443 aa0.32□□□□□ -2.36
VPS35-207ENST00000568191 COX6B1P14854 86 aa0.32□□□□□ -2.36
VPS35-207ENST00000568191 Q5VSD8 79 aa0.32□□□□□ -2.36
VPS35-207ENST00000568191 KCNQ1DNQ9H478 68 aa0.32□□□□□ -2.36
VPS35-207ENST00000568191 FANCD2Q9BXW9 1451 aa0.32□□□□□ -2.36
VPS35-207ENST00000568191 CELSR2Q9HCU4 2923 aa0.32□□□□□ -2.36
VPS35-207ENST00000568191 TOGARAM1Q9Y4F4 1720 aa0.32□□□□□ -2.36
VPS35-207ENST00000568191 SETD2Q9BYW2 2564 aaPredicted RBP0.32□□□□□ -2.36
VPS35-207ENST00000568191 APCP25054 2843 aa0.32□□□□□ -2.36
VPS35-207ENST00000568191 TRANK1O15050 2925 aa0.31□□□□□ -2.36
VPS35-207ENST00000568191 ADCY10Q96PN6 1610 aa0.31□□□□□ -2.36
VPS35-207ENST00000568191 NRXN3Q9Y4C0 1643 aa0.31□□□□□ -2.36
VPS35-207ENST00000568191 VWFP04275 2813 aa0.31□□□□□ -2.36
VPS35-207ENST00000568191 ACANP16112 2415 aa0.31□□□□□ -2.36
VPS35-207ENST00000568191 DEFB131BA0A096LNP1 70 aa0.31□□□□□ -2.36
VPS35-207ENST00000568191 CCL22O00626 93 aa0.31□□□□□ -2.36
VPS35-207ENST00000568191 DEFB114Q30KQ6 69 aa0.31□□□□□ -2.36
VPS35-207ENST00000568191 DMBT1Q9UGM3 2413 aaPredicted RBP0.3□□□□□ -2.36
VPS35-207ENST00000568191 MDN1Q9NU22 5596 aa0.3□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms