RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 SMCR5Q8TEV8 140 aa7.89□□□□□ -1.15
CLK3-216ENST00000564468 HIST1H2BLQ99880 126 aa7.89□□□□□ -1.15
CLK3-216ENST00000564468 TTTY13Q9BZ97 58 aa7.89□□□□□ -1.15
CLK3-216ENST00000564468 TRAV23DV6A0A075B6W5 121 aa7.88□□□□□ -1.15
CLK3-216ENST00000564468 B5MCH6 92 aa7.88□□□□□ -1.15
CLK3-216ENST00000564468 HINT1P49773 126 aaPredicted RBP7.88□□□□□ -1.15
CLK3-216ENST00000564468 JOSD1Q15040 202 aaPredicted RBP7.88□□□□□ -1.15
CLK3-216ENST00000564468 KRTAP13-2Q52LG2 175 aa7.88□□□□□ -1.15
CLK3-216ENST00000564468 ANKRD39Q53RE8 183 aa7.88□□□□□ -1.15
CLK3-216ENST00000564468 SPRR4Q96PI1 79 aa7.88□□□□□ -1.15
CLK3-216ENST00000564468 EIF4EBP3O60516 100 aaPredicted RBP7.87□□□□□ -1.15
CLK3-216ENST00000564468 Q6ZVH6 145 aa7.87□□□□□ -1.15
CLK3-216ENST00000564468 OR13C6PQ8NH95 151 aa7.87□□□□□ -1.15
CLK3-216ENST00000564468 SPANXDQ9BXN6 97 aa7.87□□□□□ -1.15
CLK3-216ENST00000564468 HSBP1L1C9JCN9 74 aa7.86□□□□□ -1.15
CLK3-216ENST00000564468 IFITM1P13164 125 aa7.86□□□□□ -1.15
CLK3-216ENST00000564468 CTAG1AP78358 180 aa7.86□□□□□ -1.15
CLK3-216ENST00000564468 Q6ZRX8 168 aa7.86□□□□□ -1.15
CLK3-216ENST00000564468 ZNF73O43830 326 aaPredicted RBP7.85□□□□□ -1.15
CLK3-216ENST00000564468 TSPAN13O95857 204 aa7.85□□□□□ -1.15
CLK3-216ENST00000564468 LINC00304Q8N9R0 145 aa7.85□□□□□ -1.15
CLK3-216ENST00000564468 PPDPFQ9H3Y8 114 aa7.85□□□□□ -1.15
CLK3-216ENST00000564468 PCP2Q8IVA1 136 aa7.83□□□□□ -1.16
CLK3-216ENST00000564468 PRR4Q16378 134 aa7.82□□□□□ -1.16
CLK3-216ENST00000564468 C5orf52A6NGY3 159 aa7.81□□□□□ -1.16
CLK3-216ENST00000564468 LINC00483Q53H64 154 aa7.81□□□□□ -1.16
CLK3-216ENST00000564468 GAGE2AQ6NT46 116 aa7.81□□□□□ -1.16
CLK3-216ENST00000564468 SPAG11AQ6PDA7 123 aa7.81□□□□□ -1.16
CLK3-216ENST00000564468 C3orf22Q8N5N4 141 aa7.81□□□□□ -1.16
CLK3-216ENST00000564468 Q9BRP9 147 aa7.81□□□□□ -1.16
CLK3-216ENST00000564468 C4orf48Q5BLP8 95 aa7.8□□□□□ -1.16
CLK3-216ENST00000564468 ERC2-IT1O76042 136 aa7.79□□□□□ -1.16
CLK3-216ENST00000564468 SCGB1D1O95968 90 aa7.79□□□□□ -1.16
CLK3-216ENST00000564468 MUSTN1Q8IVN3 82 aa7.79□□□□□ -1.16
CLK3-216ENST00000564468 DHRS4-AS1Q9P1J3 65 aa7.78□□□□□ -1.16
CLK3-216ENST00000564468 A0A0U1RQV1 116 aa7.77□□□□□ -1.17
CLK3-216ENST00000564468 TRAV13-2A0A0B4J235 113 aa7.76□□□□□ -1.17
CLK3-216ENST00000564468 A6NDN8 102 aa7.76□□□□□ -1.17
CLK3-216ENST00000564468 COX7BP24311 80 aa7.76□□□□□ -1.17
CLK3-216ENST00000564468 SSBP3-AS1Q7Z2R9 100 aa7.76□□□□□ -1.17
CLK3-216ENST00000564468 TRBV7-6A0A0J9YX20 115 aa7.75□□□□□ -1.17
CLK3-216ENST00000564468 ELOF1P60002 83 aaKnown RBP7.75□□□□□ -1.17
CLK3-216ENST00000564468 C6orf99Q4VX62 202 aa7.75□□□□□ -1.17
CLK3-216ENST00000564468 IGLV9-49A0A0B4J1Y8 123 aa7.74□□□□□ -1.17
CLK3-216ENST00000564468 SLC25A34Q6PIV7 304 aa7.74□□□□□ -1.17
CLK3-216ENST00000564468 Q8NBF4 154 aa7.74□□□□□ -1.17
CLK3-216ENST00000564468 MUC2Q02817 5179 aa7.73□□□□□ -1.17
CLK3-216ENST00000564468 SPINK1P00995 79 aa7.73□□□□□ -1.17
CLK3-216ENST00000564468 A0A1B0GWB2 263 aa7.72□□□□□ -1.17
CLK3-216ENST00000564468 MOBPQ13875 183 aa7.72□□□□□ -1.17
CLK3-216ENST00000564468 A4D1N5 150 aa7.71□□□□□ -1.18
CLK3-216ENST00000564468 COX8AP10176 69 aa7.71□□□□□ -1.18
CLK3-216ENST00000564468 ST20-AS1Q8NBB2 130 aa7.71□□□□□ -1.18
CLK3-216ENST00000564468 KRTAP9-2Q9BYQ4 174 aa7.71□□□□□ -1.18
CLK3-216ENST00000564468 LPAP08519 4548 aa7.71□□□□□ -1.18
CLK3-216ENST00000564468 DLEU1O43261 78 aa7.7□□□□□ -1.18
CLK3-216ENST00000564468 C9orf153Q5TBE3 101 aa7.7□□□□□ -1.18
CLK3-216ENST00000564468 SPRR1BP22528 89 aa7.69□□□□□ -1.18
CLK3-216ENST00000564468 TAL2Q16559 108 aa7.69□□□□□ -1.18
CLK3-216ENST00000564468 RETNLBQ9BQ08 111 aa7.69□□□□□ -1.18
CLK3-216ENST00000564468 NHP2Q9NX24 153 aaKnown RBP7.69□□□□□ -1.18
CLK3-216ENST00000564468 RPS29P62273 56 aaKnown RBP7.68□□□□□ -1.18
CLK3-216ENST00000564468 VAMP3Q15836 100 aa7.68□□□□□ -1.18
CLK3-216ENST00000564468 HIST1H4GQ99525 98 aa7.68□□□□□ -1.18
CLK3-216ENST00000564468 LAMTOR3Q9UHA4 124 aa7.68□□□□□ -1.18
CLK3-216ENST00000564468 SMIM11BQ8TCY0 68 aa7.67□□□□□ -1.18
CLK3-216ENST00000564468 IGLV7-46A0A075B6I9 117 aa7.66□□□□□ -1.18
CLK3-216ENST00000564468 TEX49A0A1B0GTD5 131 aa7.66□□□□□ -1.18
CLK3-216ENST00000564468 SLC25A20O43772 301 aa7.66□□□□□ -1.18
CLK3-216ENST00000564468 FP248Q71RG6 208 aaPredicted RBP7.66□□□□□ -1.18
CLK3-216ENST00000564468 VAMP8Q9BV40 100 aa7.66□□□□□ -1.18
CLK3-216ENST00000564468 SPATA45Q537H7 98 aa7.65□□□□□ -1.18
CLK3-216ENST00000564468 PAM16Q9Y3D7 125 aa7.65□□□□□ -1.18
CLK3-216ENST00000564468 TPRXLQ17RH7 258 aa7.64□□□□□ -1.19
CLK3-216ENST00000564468 DEFB105AQ8NG35 78 aa7.64□□□□□ -1.19
CLK3-216ENST00000564468 C14orf144Q96I85 54 aa7.64□□□□□ -1.19
CLK3-216ENST00000564468 HIGD1BQ9P298 99 aa7.63□□□□□ -1.19
CLK3-216ENST00000564468 IGLV5-48A0A075B6I7 105 aa7.61□□□□□ -1.19
CLK3-216ENST00000564468 CDIP1Q9H305 208 aa7.61□□□□□ -1.19
CLK3-216ENST00000564468 Q1RN00 199 aa7.6□□□□□ -1.19
CLK3-216ENST00000564468 BVES-AS1Q5T3Y7 98 aa7.6□□□□□ -1.19
CLK3-216ENST00000564468 Q8N377 158 aa7.6□□□□□ -1.19
CLK3-216ENST00000564468 PRO1933Q9H354 126 aa7.6□□□□□ -1.19
CLK3-216ENST00000564468 KRTAP9-6A0A140TA67 174 aa7.59□□□□□ -1.19
CLK3-216ENST00000564468 LINC00575Q6W349 94 aa7.59□□□□□ -1.19
CLK3-216ENST00000564468 C12orf57Q99622 126 aa7.59□□□□□ -1.19
CLK3-216ENST00000564468 LIMD2Q9BT23 127 aa7.59□□□□□ -1.19
CLK3-216ENST00000564468 hADV29S1A0JD25 119 aa7.58□□□□□ -1.2
CLK3-216ENST00000564468 RAB37Q96AX2 223 aa7.58□□□□□ -1.2
CLK3-216ENST00000564468 LINC01547P58512 204 aaPredicted RBP7.57□□□□□ -1.2
CLK3-216ENST00000564468 CD164Q04900 197 aa7.57□□□□□ -1.2
CLK3-216ENST00000564468 TMEM238LA0A1B0GVL6 79 aa7.56□□□□□ -1.2
CLK3-216ENST00000564468 A6NJY4 79 aa7.56□□□□□ -1.2
CLK3-216ENST00000564468 CFC1BP0CG36 223 aa7.56□□□□□ -1.2
CLK3-216ENST00000564468 CFC1P0CG37 223 aa7.56□□□□□ -1.2
CLK3-216ENST00000564468 SMIM29Q86T20 159 aa7.56□□□□□ -1.2
CLK3-216ENST00000564468 A0A0B4J2C4 111 aa7.55□□□□□ -1.2
CLK3-216ENST00000564468 F8WEM9 126 aa7.55□□□□□ -1.2
CLK3-216ENST00000564468 SNCGO76070 127 aa7.55□□□□□ -1.2
CLK3-216ENST00000564468 C2orf91Q6ZV80 131 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms